Electrical Impedance Tomography (EIT) is a non linear inverse problem in which the electrical conductivity or resistivity distribution across a closed domain of interest is reconstructed from the surface potentials measured at the domain boundary by injecting a constant sinusoidal current through an array of surface electrodes. Being a non-invasive, non-radiating, non-ionizing, portable and inexpensive methodology, EIT has been extensively studied in medical diagnosis, biomedical engineering, biotechnology, chemical engineering, industrial and process engineering, civil and material engineering, soil and rock science, electronic industry, defense field, nano-technology and many other fields of applied physics. The reconstructed image quality in EIT depends mainly on the boundary data quality and the performance of the reconstruction algorithm used. The boundary data accuracy depends on the design of the practical phantoms, current injection method and boundary data measurement process and precision. On the other hand, the reconstruction algorithm performance is highly influenced by the mathematical modeling of the system, performance of the forward solver and Jacobian computation, inverse solver and the regularization techniques. Hence, for improving the EIT system performance, it is essential to improve the design of practical phantom, instrumentation and image reconstruction algorithm. As the electrical impedance of biological materials is a function of tissue composition and the frequency of applied ac signal, the better assessment of impedance distribution of biological tissues needs multifrequency EIT imaging. In medical EIT, to obtain a better image quality for a complex organ or a body part, accurate domain modelling with a large 3D finite element mesh is preferred and hence, the computation speed becomes very expensive and time consuming. But, the high speed reconstruction with improved image quality at low cost is always preferred in medical EIT. In this direction, a complete multifrequency multifunction EIT (MfMf-EIT) system is developed and multifrequency impedance reconstruction is studied to improve the bioimpedance imaging. The MfMf-EIT system consists of an MfMf-EIT instrumentation (MfMf-EITI), high speed impedance image reconstruction algorithms (IIRA), a Personal Computer (PC) and a number of practical phantoms with EIT sensors or electrodes. MfMf-EIT system and high speed IIRA are studied tested and evaluated with the practical phantoms and the multifrequency impedance imaging is improved with better image quality as well as fast image reconstruction. The MfMf-EIT system is also applied to the human subjects and the impedance imaging is studied for human body imaging and the system is evaluated. MfMf-EIT instrumentation (MfMf-EITI) consists of a multifrequency multifunction constant current injector (MfMf-CCI), multifrequency multifunction data acquisition system (MfMf DAS), a programmable electrode switching module (P-ESM) and a modified signal conditioner blocks (M-SCB) or data processing unit (DPU). MfMf-CCI, MfMf-DAS, P-ESM and M-SCBs are interfaced with a LabVIEW based data acquisition program (LV-DAP) controlled by a LabVIEW based graphical user interface (LV-GUI). LV-GUI controls the current injection and data acquisition with a user friendly, fast, reliable, efficient measurement process. The data acquisition system performance is improved by the high resolution NIDAQ card providing high precision measurement and high signal to noise ratio (SNR). MfMf-EIT system is developed as a versatile data acquisition system with a lot of flexibilities in EIT parameter selection that allows studying the image reconstruction more effectively. MfMf-EIT instrumentation controls the multifrequency and multifunctioned EIT experimentation with a number of system variables such as signal frequency, current amplitude, current signal wave forms and current injection patterns. It also works with either grounded load CCI or floating load CCI and collects the boundary data either in grounded potential form or differential form. The MfMf-EITI is futher modified to a battery based MfMf-EIT (BbMfMf-EIT) system to obtain a better patient safety and also to improve the SNR of the boundary data. MfMf-EIT system is having a facility of injecting voltage signal to the objects under test for conducting the applied potential tomography (APT). All the electronic circuit blocks in MfMf-EIT instrumentation are tested, evaluated and calibrated. The frequency response, load response, Fast Fourier Transform (FFT) studies and DSO analysis are conducted for studying the electronic performance and the signal quality of all the circuit blocks. They are all evaluated with both the transformer based power supply (TBPS) and battery based power supply (BBPS). MfMf-DAS, P-ESM and LV-DAP are tested and evaluated with digital data testing module (DDTM) and practical phantoms. A MatLAB-based Virtual Phantom for 2D EIT (MatVP2DEIT) is developed to generate accurate 2D boundary data for assessing the 2D EIT inverse solvers and its image reconstruction accuracy. It is a MATLAB-based computer program which defines a phantom domain and its inhomogeneities to generate the boundary potential data by changing its geometric parameters. In MatVP2DEIT, the phantom diameter, domain discretization, inhomogeneity number, inhomogeneity geometry (shape, size and position), electrode geometry, applied current magnitude, current injection pattern, background medium conductivity, inhomogeneity conductivity all are set as the phantom variables and are chosen indipendently for simulating different phantom configurations. A constant current injection is simulated at the phantom boundary with different current injection protocols and boundary potential data are calculated. A number of boundary data sets are generated with different phantom configurations and the resistivity images are reconstructed using EIDORS (Electrical Impedance Tomography and Diffuse Optical Tomography Reconstruction Software). Resistivity images are evaluated with the resistivity parameters and contrast parameters estimated from the elemental resistivity profiles of the reconstructed impedance images. MfMf-EIT system is studied, tested, evaluated with a number of practical phantoms eveloped with non-biological and biological materials and the multifrequency impedance imaging is improved. A number of saline phantoms with single and multiple inhomogeneities are developed and the boundary data profiles are studied and the phantom geometry is modified. NaCl-insulator phantoms and the NaCl-vegetable phantoms with different inhomogeneity configurations are developed and the multifrequency EIT reconstruction is studied with different current patterns, different current amplitudes and different frequencies using EIDORS as well as the developed IIRAs developed in MATLAB to evaluate the phantoms and MfMf-EIT system. Real tissue phantoms are developed with different chicken tissue backgrounds and high resistive inhomogeneities and the resistivity image reconstruction is studied using MfMf-EIT system. Chicken tissue phantoms are developed with chicken muscle tissue (CMTP) paste or chicken tissue blocks (CMTB) as the background mediums and chicken fat tissue, chicken bone, air hole and nylon cylinders are used as the inhomogeneity to obtained different phantom configurations. Resistivity imaging of all the real tissue phantoms is reconstructed in EIDORS and developed IIRAs with different current patterns, different frequencies and the images are evaluated by the image parameters to assess the phantoms as well as the MfMf-EIT system. Gold electrode phantoms are developed with thin film based flexible gold electrode arrays for improved bioimpedance and biomedical imaging. The thin film based gold electrode arrays of high geometric precision are developed on flexible FR4 sheet using electro-deposition process and used as the EIT sensors. The NaCl phantoms and real tissue phantoms are developed with gold electrode arrays and studied with MfMf-EIT system and and the resiulsts are compared with identical stainless steel electrode phantoms. NaCl phantoms are developed with 0.9% NaCl solution with single and multiple insulator or vegetable tissues as inhomogeneity. Gold electrode real tissue phantoms are also developed with chicken muscle tissues and fat tissues or other high resistive objects. The EIT images are reconstructed for the gold electrode NaCl phantoms and the gold electrode real tissue phantoms with different phantom geometries, different inhomogeneity configurations and different current patterns and the results are compared with identical SS electrode phantoms. High speed IIRAs called High Speed Model Based Iterative Image Reconstruction (HSMoBIIR) algorithms are developed in MATLAB for impedance image reconstruction in Electrical Impedance Tomography (EIT) by implementing high speed Jacobian calculation techniques using “Broyden’s Method (BM)” and “Adjoint Broyden’s Method (ABM)”. Gauss Newton method based EIT inverse solvers repeatitively evaluate the Jacobian (J) which consumes a lot of computation time for reconstruction, whereas, the HSMoBIIR with Broyden’s Methods (BM)-based accelerated Jacobian Matrix Calculators (JMCs) provides the high speed schemes for Jacobian (J) computation which is integrated with conjugate gradient scheme (CGS) for fast impedance reconstruction. The Broyden’s method based HSMoBIIR (BM-HSMoBIIR) and Adjoint Broyden’s method based HSMoBIIR (ABM-HSMoBIIR) algorithm are developed for high speed improved impedance imaging using BM based JMC (BM-JMC) and ABM-based JMC (ABM-JMC) respectively. Broyden’s Method based HSMoBIIR algorithms make explicit use of secant and adjoint information that can be obtained from the forward solution of the EIT governing equation and hence both the BM-HSMoBIIR and ABM-HSMoBIIR algorithms reduce the computational time remarkably by approximating the system Jacobian (J) successively through low-rank updates. The impedance image reconstruction is studied with BM-HSMoBIIR and ABM-HSMoBIIR algorithms using the simulated and practical phantom data and results are compared with a Gauss-Newton method based MoBIIR (GNMoBIIR) algorithm. The GNMoBIIR algorithm is developed with a Finite Element Method (FEM) based flexible forward solver (FFS) and Gauss-Newton method based inverse solver (GNIS) working with a modified Newton-Raphson iterative technique (NRIT). FFS solves the forward problem (FP) to obtain the computer estimated boundary potential data (Vc) data and NRIT based GNIS solve the inverse problem (IP) and the conductivity update vector [Δσ] is calculated by conjugate gradient search by comparing Vc measured boundary potential data (Vm) and using the Jacobian (J) matrix computed by the adjoint method. The conductivity reconstruction is studied with GNMoBIIR, BM-HSMoBIIR and ABM-HSMoBIIR algorithms using simulated data a practical phantom data and the results are compared. The reconstruction time, projection error norm (EV) and the solution error norm (Eσ) produced in HSMoBIIR algorithms are calculated and compared with GNMoBIIR algorithm. Results show that both the BM-HSMoBIIR and ABM-HSMoBIIR algorithms successfully reconstructs the conductivity distribution of the domain under test with its proper inhomogeneity and background conductivities for simulation as well as experimental studies. Simulated and practical phantom studies demonstrate that both the BM-HSMoBIIR and ABM-HSMoBIIR algorithms accelerate the impedance reconstruction by more than five times. It is also observed that EV and Eσ are reduced in both the HSMoBIIR algorithms and hence the image quality is improved. Noise analysis and convergence studies show that both the BM-HSMoBIIR and ABM-HSMoBIIR algorithms works faster and better in noisy conditions compared to GNMoBIIR. In low noise conditions, BM-HSMoBIIR is faster than to ABM-HSMoBIIR algorithm. But, in higher noisy environment, the ABM-HSMoBIIR is found faster and better than BM-HSMoBIIR. Two novel regularization methods called Projection Error Propagation-based Regularization (PEPR) and Block Matrix based Multiple Regularization (BMMR) are proposed to improve the image quality in Electrical Impedance Tomography (EIT). PEPR method defines the regularization parameter as a function of the projection error contributed by the mismatch (difference) between the data obtained from the experimental measurements (Vm) and calculated data (Vc). The regularization parameter in the reconstruction algorithm gets modified automatically according to the noise level in measured data and ill-posedness of the Hessian matrix. The L-2 norm of the projection error is calculated using the voltage difference and it is used to find the regularization parameter in each iteration in the reconstruction algorithm. In BMMR method, the response matrix (JTJ) obtained from the Jacobian matrix (J) has been partitioned into several sub-block matrices and the highest eigenvalue of each sub-block matrices has been chosen as regularization parameter for the nodes contained by that sub-block. The BMMR method preserved the local physiological information through the multiple regularization process which is then integrated to the ill-posed inverse problem to make the regularization more effective and optimum for all over the domain. Impedance imaging with simulated data and the practical phantom data is studied with PEPR and BMMR techniques in GNMoBIIR and EIDORS and the reconstructed images are compared with the single step regularization (STR) and Modified Levenberg Regularization (LMR). The projection error and the solution error norms are estimated in the reconstructions processes with PEPR and the BMMR methods and the results are compared with the errors estimated in STR and modified LMR techniques. Reconstructed images obtained with PEPR and BMMR are also studied with image parameters and contrast parameters and the reconstruction performance with PEPR and BMMR are evaluated by comparing the results with STR and modified LMR. PEPR and BMMR techniques are successfully implemented in the GNMoBIIR and EIDORS algorithms to improve the impedance image reconstruction by regularizing the solution domain in EIT reconstruction process. As the multifrequency EIT is always preferred in biological object imaging for better assessments of the frequency dependent bioimpedance response, multifrequency impedance imaging is studied with MfMf-EIT system developed for biomedical applications. MfMf-EIT system is studied, tested and evaluated with practical phantoms suitably developed for multifrequency impedance imaging within a wide range of frequency. Different biological materials are studied with electrical impedance spectroscopy (EIS) and a number of practical biological phantoms suitable for multifrequency EIT imaging are developed. The MfMf-EIT system is studied, tested and evaluated at different frequency levels with different current patterns using a number of NaCl phantoms with single, multiple and hybrid vegetable tissue phantoms as well as with chicken tissue phantoms. BbMfMf-EIT system is also studied and evaluated with the multifrequency EIT imaging using the developed biological phantoms. The developed MfMf-EIT system is applied on human body for impedance imaging of human anatomy. Impedance imaging of human leg and thigh is studied to visualize the muscle and bone tissues using different current patterns and different relative electrode positions. Ag/AgCl electrodes are attached to the leg and thigh using ECG gel and the boundary data are collected with MfMf-EIT EIT system by injecting a 1 mA and 50 kHz sinusoidal constant current with neighbouring and opposite current injection patterns. Impedance images of the femur bone of the human thigh and the tibia and fibula bones of the human leg along with the muscle tissue backgrounds are reconstructed in EIDORS and GNMoBIIR algorithms. Reconstructed resistivity profiles of bone and muscles are compared with the resistivity data profiles reported in the published literature. Impedance imaging of leg and thigh is studied with MfMf-EIT system for different current patterns, relative electrode positions and the images are evaluated to assess the system reliability. Battery based MfMf-EIT system (BbMfMf-EIT) is also studied for human leg and thigh imaging and it is observed that MfMf-EIT system and BbMfMf-EIT system are suitable for impedance imaging of human body imaging though the BbMfMf-EIT system increases the patiet safety. Therefore, the developed MfMf-EIT and BbMfMf-EIT systems are found quite suitable to improve the bio-impedance imaging in medical, biomedical and clinical applications as well as to study the anatomical and physiological status of the human body to diagnose, detect and monitor the tumors, lesions and a number of diseases or anatomical abnormalities in human subjects.

In my master’s thesis I describe basics of magnetic resonance measurement. I focus on methods of DCE-MRI with T1 weighting image. I mention some basic contrast agents which are used in MRI imaging. I describe some of pulse sequences which are used in experimental part of my thesis. There I measure contrast in the sample. The measurement is performed in accordance with an acquisition protocol I have proposed. The experiment part was realized on 1.5 T magnet at Masaryk Oncological Institute in Brno. I improved software which is use to research of MR IR TurboFLASH’s data and made software which is use to evaluation perfuse analysis ours measured sequences. At the end I made a discussion about gained facts.

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Der Zerfall des sozialistischen Jugoslawien ließ aus seinen acht föderalen Einheiten sieben neue Staaten ent-stehen. Die einzige bislang unerforschte Ausnahme ist dabei die Autonome Provinz Vojvodina, die weiterhin ein Teil Serbiens bleibt, wenn auch mit einer erheblich eingeschränkten Autonomie. Insbesondere Fragen nach Qualität bzw. Quantität der Autonomie waren Gegenstand heftiger politischer Auseinandersetzungen in der Vojvodina seit Ende der 1980er Jahre. Die politischen Unterschiede zwischen den „Autonomisten“ in der Provinz, die sich auch in den 1990ern für eine breite Autonomie einsetzten, und der Belgrader Zentralregierung, deren Macht auf der Idee eines starken vereinten Serbiens beruhte, wurden von den ersteren zunehmend als historisch vorbestimmte kulturelle Differenzen ausgelegt, die hier als „Phantomgrenzen“ untersucht werden. In Form verschiedener symbolisch verknüpfter Aussagen über die historische Besonderheit der Bevölkerung, Wirtschaft und Kultur der Vojvodina wurden die politischen Forderungen nach mehr Autonomie wiederholt bekräftigt. Diese wiederum wurde auch als Schutz vor dem und Gegenmodell zum erstarkten serbischen Nationalismus der „Ära Milošević“ dargestellt. Im Laufe der inzwischen mehr als zwei Jahrzehnte fügten sich diese Deutungen zu einem neuen Autonomiediskurs zusammen. Wie dieser entstand, d.h. welche Akteure wie und zu welchen Zwecken die Phantomgrenzen der Vojvodina wieder auftauchen ließen, sowie welche Bedeutung die Autonomieidee in der Umbruchszeit der 1990er Jahre im Alltag der Menschen in der Vojvodina erlangte, sind zentrale Forschungsfragen der Fallstudie. Sie bietet damit nicht nur neue empirische Erkenntnisse zur Geschichte des jugoslawischen Staatszerfalls und der postsozialistischen Zeit in Südosteuropa, sondern ermöglicht mit dem verwendeten Modell der „Phantomgrenzen“ auch neue Einblicke in und allgemeine Aussagen über das Wiederauftauchen von Geschichte und historischen Grenzen in Osteuropa nach 1989. / The breakup of socialist Yugoslavia led to the creation of seven new states out of its eight federal units. The only exception, until now unexplored, is the Autonomous Province of Vojvodina, which remains a part of Serbia, although with a substantially restricted autonomy. Notably questions about the quality and quantity of autonomy have been a subject of heavy political conflicts in Vojvodina since the end of the 1980s. Political differences between the „autonomists“ in the province, who also during the 1990s advocated a broad autonomy, and the central government in Belgrade, whose power was based on the idea of a strong unified Serbia, the former increasingly presented as historically predetermined cultural differences, which are explored here as “phantom borders”. The political claims for more autonomy were thus repeatedly reinforced in terms of various symbolically connected statements about the historical distinctiveness of the population, economy and culture of Vojvodina. The autonomy in turn was also represented as an instrument of protection against and alternative model to the growing Serbian nationalism during the “Milošević era”. In the course of meanwhile more than two decades these interpretations merged into a new autonomy discourse. How this emerged, i.e. which agents made how and for what purposes the phantom borders of Vojvodina reappear, as well as what relevance the idea of autonomy gained during the period of radical change in the 1990s in everyday life of the people in Vojvodina are the central research questions of the case study. It hereby offers not only new empirical findings about the history of the breakup of the Yugoslav state and the post-socialist period in Southeastern Europe, but due to the used model of “phantom borders” also permits new insights into and general conclusions about the reappearance of history and historical borders in Eastern Europe after 1989.

This thesis presents work around 3 themes: dark energy, gravitational waves and Bayesian inference. Both dark energy and gravitational wave physics are not yet well constrained. They present interesting challenges for Bayesian inference, which attempts to quantify our knowledge of the universe given our astrophysical data. A dark energy equation of state reconstruction analysis finds that the data favours the vacuum dark energy equation of state $w {=} -1$ model. Deviations from vacuum dark energy are shown to favour the super-negative ‘phantom’ dark energy regime of $w {< } -1$, but at low statistical significance. The constraining power of various datasets is quantified, finding that data constraints peak around redshift $z = 0.2$ due to baryonic acoustic oscillation and supernovae data constraints, whilst cosmic microwave background radiation and Lyman-$\alpha$ forest constraints are less significant. Specific models with a conformal time symmetry in the Friedmann equation and with an additional dark energy component are tested and shown to be competitive to the vacuum dark energy model by Bayesian model selection analysis: that they are not ruled out is believed to be largely due to poor data quality for deciding between existing models. Recent detections of gravitational waves by the LIGO collaboration enable the first gravitational wave tests of general relativity. An existing test in the literature is used and sped up significantly by a novel method developed in this thesis. The test computes posterior odds ratios, and the new method is shown to compute these accurately and efficiently. Compared to computing evidences, the method presented provides an approximate 100 times reduction in the number of likelihood calculations required to compute evidences at a given accuracy. Further testing may identify a significant advance in Bayesian model selection using nested sampling, as the method is completely general and straightforward to implement. We note that efficiency gains are not guaranteed and may be problem specific: further research is needed.

Peripheral vascular grafts are used for the treatment of peripheral arterial disease and arteriovenous grafts for vascular access in end stage renal disease. The development of neo-intimal hyperplasia and thrombosis in the distal anastomosis remains the main reason for occlusion in that region. The local haemodynamics produced by a graft in the host vessel is believed to significantly affect endothelial function. Single spiral flow is a normal feature in medium and large sized vessels and it is induced by the anatomical structure and physiological function of the cardiovascular system. Grafts designed to generate a single spiral flow in the distal anastomosis have been introduced in clinical practice and are known as spiral grafts. In this work, spiral peripheral vascular and arteriovenous grafts were compared with conventional grafts using ultrasound and computational methods to identify their haemodynamic differences. Vascular-graft flow phantoms were developed to house the grafts in different surgical configurations. Mimicking components, with appropriate acoustic properties, were chosen to minimise ultrasound beam refraction and distortion. A dual-beam two-dimensional vector Doppler technique was developed to visualise and quantify vortical structures downstream of each graft outflow in the cross-flow direction. Vorticity mapping and measurements of circulation were acquired based on the vector Doppler data. The flow within the vascular-graft models was simulated with computed tomography based image-guided modelling for further understanding of secondary flow motions and comparison with the experimental results. The computational assessments provided a three-dimensional velocity field in the lumen of the models allowing a range of fluid dynamic parameters to be predicted. Single- or double-spiral flow patterns consisting of a dominant and a smaller vortex were detected in the outflow of the spiral grafts. A double- triple- or tetra-spiral flow pattern was found in the outflow of the conventional graft, depending on model configuration and Reynolds number. These multiple-spiral patterns were associated with increased flow stagnation, separation and instability, which are known to be detrimental for endothelial behaviour. Increased in-plane mixing and wall shear stress, which are considered atheroprotective in normal vessels, were found in the outflow of the spiral devices. The results from the experimental approach were in agreement with those from the computational approach. This study applied ultrasound and computational methods to vascular-graft phantoms in order to characterise the flow field induced by spiral and conventional peripheral vascular and arteriovenous grafts. The results suggest that spiral grafts are associated with advanced local haemodynamics that may protect endothelial function and thereby may prevent their outflow anastomosis from neo-intimal hyperplasia and thrombosis. Consequently this work supports the hypothesis that spiral grafts may decrease outflow stenosis and hence improve patency rates in patients.