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The medium is the message in the first place: the medium as presence, as the author. His contribution to the academic world is his academic Holographic Memoirs. His story, the author's memoirs, is a fictive-narrative discourse with an organic ubuntu open-endedness. The Hologram is both an autobiography, but also all the information at all places simultaneously – nonlocal in quantum physical terms - within an intense hallucinating dream: no illusion, but rather a HyperReality with all its Virtual Identities. The invention of tram hopping is the plot of the story. The plot is like an hourglass where the first part of the story is the emptying of the sand, the deconstruction of modernism, but while the top chamber runs empty and the bottom chamber fills up, so the deconstruction is simultaneously a dependent arising/(social) construction/ubuntuing to revival – the synagogal Shekinah presence of YAHWEH. The top chamber is the unreasonable Newtonian physics and the bottom chamber reasonable quantum physics. The metaphysics (before the physics) of the top chamber is poststructuralism and deconstruction, while the bottom chamber is the virtual Hebraic worldview that delutively merges ubuntu and Buddhism. The long narrow neck in the middle is the moonily narrative that lives us with psychology (Psycho-logic) lost in sociology (Social-physics). Hermeneutics is set forth in the same contrasting hourglass of the top chamber, the inherited tradition, emptying to what it should accomplish – (virtual) presence. / Philosophy & Systematic Theology / D. Th. (Systematic Theology)

Nous proposons dans cette thèse de caractériser quantitativement la variabilité à différentes échelles au cours de l'embryogenèse. Pour ce faire, nous utilisons une combinaison de modèles mathématiques et de résultats expérimentaux. Dans la première partie, nous utilisons une petite cohorte d'oursins digitaux pour construire une représentation prototypique du lignage cellulaire, reliant les caractéristiques des cellules individuelles avec les dynamiques à l'échelle de l'embryon tout entier. Ce modèle probabiliste multi-niveau et empirique repose sur les symétries des embryons et sur les identités cellulaires; cela permet d'identifier un niveau de granularité générique pour observer les distributions de caractéristiques cellulaires individuelles. Le prototype est défini comme le barycentre de la cohorte dans la variété statistique correspondante. Parmi plusieurs résultats, nous montrons que la variabilité intra-individuelle est impliquée dans la reproductibilité du développement embryonnaire. Dans la seconde partie, nous considérons les mécanismes sources de variabilité au cours du développement et leurs relations à l'évolution. En nous appuyant sur des résultats expérimentaux montrant une pénétrance incomplète et une expressivité variable de phénotype dans une lignée mutante du poisson zèbre, nous proposons une clarification des différents niveaux de variabilité biologique reposant sur une analogie formelle avec le cadre mathématique de la mécanique quantique. Nous trouvons notamment une analogie formelle entre l'intrication quantique et le schéma Mendélien de transmission héréditaire. Dans la troisième partie, nous étudions l'organisation biologique et ses relations aux trajectoires développementales. En adaptant les outils de la topologie algébrique, nous caractérisons des invariants du réseaux de contacts cellulaires extrait d'images de microscopie confocale d'épithéliums de différentes espèces et de différents fonds génétiques. En particulier, nous montrons l'influence des histoires individuelles sur la distribution spatiales des cellules dans un tissu épithélial. / We propose in this thesis to characterize variability quantitatively at various scales during embryogenesis. We use a combination of mathematical models and experimental results. In the first part, we use a small cohort of digital sea urchin embryos to construct a prototypical representation of the cell lineage, which relates individual cell features with embryo-level dynamics. This multi-level data-driven probabilistic model relies on symmetries of the embryo and known cell types, which provide a generic coarse-grained level of observation for distributions of individual cell features. The prototype is defined as the centroid of the cohort in the corresponding statistical manifold. Among several results, we show that intra-individual variability is involved in the reproducibility of the developmental process. In the second part, we consider the mechanisms sources of variability during development and their relations to evolution. Building on experimental results showing variable phenotypic expression and incomplete penetrance in a zebrafish mutant line, we propose a clarification of the various levels of biological variability using a formal analogy with quantum mechanics mathematical framework. Surprisingly, we find a formal analogy between quantum entanglement and Mendel’s idealized scheme of inheritance. In the third part, we study biological organization and its relations to developmental paths. By adapting the tools of algebraic topology, we compute invariants of the network of cellular contacts extracted from confocal microscopy images of epithelia from different species and genetic backgrounds. In particular, we show the influence of individual histories on the spatial distribution of cells in epithelial tissues.

Nous proposons dans cette thèse de caractériser quantitativement la variabilité à différentes échelles au cours de l'embryogenèse. Pour ce faire, nous utilisons une combinaison de modèles mathématiques et de résultats expérimentaux. Dans la première partie, nous utilisons une petite cohorte d'oursins digitaux pour construire une représentation prototypique du lignage cellulaire, reliant les caractéristiques des cellules individuelles avec les dynamiques à l'échelle de l'embryon tout entier. Ce modèle probabiliste multi-niveau et empirique repose sur les symétries des embryons et sur les identités cellulaires; cela permet d'identifier un niveau de granularité générique pour observer les distributions de caractéristiques cellulaires individuelles. Le prototype est défini comme le barycentre de la cohorte dans la variété statistique correspondante. Parmi plusieurs résultats, nous montrons que la variabilité intra-individuelle est impliquée dans la reproductibilité du développement embryonnaire. Dans la seconde partie, nous considérons les mécanismes sources de variabilité au cours du développement et leurs relations à l'évolution. En nous appuyant sur des résultats expérimentaux montrant une pénétrance incomplète et une expressivité variable de phénotype dans une lignée mutante du poisson zèbre, nous proposons une clarification des différents niveaux de variabilité biologique reposant sur une analogie formelle avec le cadre mathématique de la mécanique quantique. Nous trouvons notamment une analogie formelle entre l'intrication quantique et le schéma Mendélien de transmission héréditaire. Dans la troisième partie, nous étudions l'organisation biologique et ses relations aux trajectoires développementales. En adaptant les outils de la topologie algébrique, nous caractérisons des invariants du réseaux de contacts cellulaires extrait d'images de microscopie confocale d'épithéliums de différentes espèces et de différents fonds génétiques. En particulier, nous montrons l'influence des histoires individuelles sur la distribution spatiales des cellules dans un tissu épithélial. / We propose in this thesis to characterize variability quantitatively at various scales during embryogenesis. We use a combination of mathematical models and experimental results. In the first part, we use a small cohort of digital sea urchin embryos to construct a prototypical representation of the cell lineage, which relates individual cell features with embryo-level dynamics. This multi-level data-driven probabilistic model relies on symmetries of the embryo and known cell types, which provide a generic coarse-grained level of observation for distributions of individual cell features. The prototype is defined as the centroid of the cohort in the corresponding statistical manifold. Among several results, we show that intra-individual variability is involved in the reproducibility of the developmental process. In the second part, we consider the mechanisms sources of variability during development and their relations to evolution. Building on experimental results showing variable phenotypic expression and incomplete penetrance in a zebrafish mutant line, we propose a clarification of the various levels of biological variability using a formal analogy with quantum mechanics mathematical framework. Surprisingly, we find a formal analogy between quantum entanglement and Mendel’s idealized scheme of inheritance. In the third part, we study biological organization and its relations to developmental paths. By adapting the tools of algebraic topology, we compute invariants of the network of cellular contacts extracted from confocal microscopy images of epithelia from different species and genetic backgrounds. In particular, we show the influence of individual histories on the spatial distribution of cells in epithelial tissues.

Cette thèse porte sur l'étude de modèles non linéaires issus de la mécanique quantique relativiste.Dans la première partie, nous démontrons à l'aide d'une méthode de tir l'existence d'une infinité de solutions d'équations de Dirac non linéaires provenant d'un modèle de hadrons et d'un modèle de la physique des noyaux.Dans la seconde partie, nous prouvons par des méthodes variationnelles l'existence d'un état fondamental et d'états excités pour deux modèles de la physique des hadrons. Par la suite, nous étudions la transition de phase reliant les deux modèles grâce à la Gamma-convergence.La dernière partie est consacrée à l'étude d'un autre modèle de hadrons dans lequel les fonctions d'onde des quarks sont parfaitement localisées. Nous énonçons quelques résultats préliminaires que nous avons obtenus. / This thesis is devoted to the study of nonlinear models from relativistic quantum mechanics.In the first part, we show thanks to a shooting method, the existence of infinitely many solutions of nonlinear Dirac equations of two models from the physics of hadrons and the physics of the nucleus.In the second part, we prove thanks to variational methods the existence of a ground state and excited states for two models of the physics of hadrons. Next, we study the phase transition which links the models thanks to the $\Gamma$-convergence.The last part is devoted to the study of another model from the physics of hadrons in which the wave functions are perfectly confined. We give some preliminary results.

<p>Bose-Einstein condensates (BECs) in light-induced synthetic gauge fields and spaces can provide a highly-tunable platform for quantum simulations. Chapter 1 presents a short introduction to the concepts of BECs and our BEC machine. Chapter 2 introduces some basic ideas of how to use light-matter interactions to create synthetic gauge fields and spaces for neutral atoms. Three main research topics of the thesis are summarized below.</p> <p>Chapter 3: Recently, using bosonic quasiparticles (including their condensates) as spin carriers in spintronics has become promising for coherent spin transport over macroscopic distances. However, understanding the effects of spin-orbit (SO) coupling and many-body interactions on such a spin transport is barely explored. We study the effects of synthetic SO coupling (which can be turned on and off, not allowed in usual materials) and atomic interactions on the spin transport in an atomic BEC.</p> <p>Chapter 4: Interplay between matter and fields in physical spaces with nontrivial geometries can lead to phenomena unattainable in planar spaces. However, realizing such spaces is often impeded by experimental challenges. We synthesize real and curved synthetic dimensions into a Hall cylinder for a BEC, which develops symmetry-protected topological states absent in the planar counterpart. Our work opens the door to engineering synthetic gauge fields in spaces with a wide range of geometries and observing novel phenomena inherent to such spaces.</p> <p>Chapter 5: Rotational properties of a BEC are important to study its superfluidity. Recent studies have found that SO coupling can change a BEC's rotational and superfluid properties, but this topic is barely explored experimentally. We study rotational dynamics of a SO-coupled BEC in an effective rotating frame induced by a synthetic magnetic field. Our work may allow for studying how SO coupling modify a BEC's rotational and superfluid properties.</p> <p>Chapter 6 presents some possible future directions.</p>

This thesis focuses on two aspects of Quantum Information Processing (QIP) and contains experimental implementation by Nuclear Magnetic Resonance (NMR) spectroscopy. The two aspects are: (i) development of novel methodologies for improved or fault tolerant QIP using longer lived states and geometric phases and (ii) implementation of certain quantum algorithms and theorems by NMR. In the first chapter a general introduction to Quantum Information Processing and its implementation using NMR as well as a description of NMR Hamiltonians and NMR relaxation using Redfield theory and magnetization modes are given. The second chapter contains a study of relaxation of Pseudo Pure States (PPS). PPS are specially prepared initial states from where computation begins. These states, being non-equilibrium states, relax with time and hence introduce error in computation. In this chapter we have studied the role of Cross-Correlations in relaxation of PPS. The third and fourth chapters, respectively report observation of cyclic and non-cyclic geometric phases. When the state of a qubit is subjected to evolution either adiabatically or non-adiabatically along the surface of the Bloch sphere, the qubit sometimes gain a phase factor apart from the dynamic phase. This is known as the Geometric phase, as it depends only on the geometry of the path of evolution. Geometric phase is used in Fault tolerant QIP. In these two chapters we have demonstrated how geometric phases of a qubit can be measured using NMR. The fifth and sixth chapters contain the implementations of “No Deletion” and “No Cloning” (quantum triplicator for partially known states) theorems. No Cloning and No Deletion theorems are closely related. The former states that an unknown quantum states can not be copied perfectly while the later states that an unknown state can not be deleted perfectly either. In these two chapters we have discussed about experimental implementation of the two theorems. The last chapter contains implementation of “Deutsch-Jozsa” algorithm in strongly dipolar coupled spin systems. Dipolar couplings being larger than the scalar couplings provide better opportunity for scaling up to larger number of qubits. However, strongly coupled systems offer few experimental challenges as well. This chapter demonstrates how a strongly coupled system can be used in NMR QIP.

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After giving a brief background on the subject we introduce in section two the Phase-Integral Method of Fröman &amp; Fröman in terms of the platform function of Yngve and Thidé. In section three we derive a different form of the radial Bohr-Sommerfeld condition in terms of the apsidal angle of the corresponding classical motion. Using the derived expression, we then show how easily one can calculate the exact energy eigenvalues of the hydrogen atom and the isotropic three-dimensional harmonic oscillator, we also derive an expression for higher order quantization condition. In section four we derive an expression for the angular frequencies of a restricted (0≤φ≤β) soap bubble and also give a proposition concerning the parameters l and m of the associated Legendre differential equation. / Vi använder Fröman &amp; Frömans Fas-Integral Metod tillsammans med Yngve &amp; Thidés plattformfunktion för att härleda kvantiseringsvilkoret för högre ordningar. I sektion tre skriver vi Bohr-Sommerfelds kvantiseringsvillkor på ett annorlunda sätt med hjälp av den så kallade apsidvinkeln (definierad i samma sektion) för motsvarande klassiska rörelse, vi visar också hur mycket detta underlättar beräkningar av energiegenvärden för väteatomen och den isotropa tredimensionella harmoniska oscillatorn. I sektion fyra tittar vi på en såpbubbla begränsad till området 0≤φ≤β för vilket vi härleder ett uttryck för dess (vinkel)egenfrekvenser. Här ger vi också en proposition angående parametrarna l och m tillhörande den associerade Legendreekvationen.

The study investigated the impact of computer simulations on the teaching and learning of photoelectric effect in Grade 12. The Grade 12 Physical Sciences curriculum has components of physics and chemistry. The photoelectric effect is a section in the physics curriculum and examination in the National Senior Certificate. In this case study, thirty learners were randomly divided into three groups in one rural school in the Frances Baard district in the Northern Cape Province. A randomised pre-test - post-test control group design was implemented. Data were collected through pre and post tests, by observation of the lessons and learner interviews. An analysis of variance performed showed that there was no significant difference on pre-test scores for the three groups. A paired -sample t-test on the post-test scores discovered that the Teacher-Centred Experimental Group (TCEG) performed better than the Learner-Centred Experimental Group (LCEG); (t statics, t (9) = -6.135, p < 0.05). In addition, the Control Group (CG) where the teacher used the traditional method of teaching performed even better than the Learner-Centred Experimental group. An analysis of covariance on the post-test scores with learners' pre-test scores as the covariate showed a significant effect on the instructional group favouring the TCEG (F (2,29) = 52.763, p < 0.05). The Hake's normalised gain, <g> was used to measure the effectiveness of the intervention. The normalised gain showed a high-g (0.794) for the TCEG, a medium-g (0.405) for the CG and a low-g (0.134) for the LCEG. The interview data also confirms that the TCEG learners benefited more than the LCEG learners. It is, therefore, suggested that the TCEG approach is a better method for the effective teaching of photoelectric effect. / Science and Technology Education / M. Sc. (MSTE)