Made available in DSpace on 2016-04-26T19:39:32Z (GMT). No. of bitstreams: 1 2009 - Leandro Azevedo Santos.pdf: 3069700 bytes, checksum: dbd1726a5b683e7f290e1829143eacac (MD5) Previous issue date: 2009-06-03 / Funda??o Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio de Janeiro / To improve nitrogen usage efficiency in plants the rice transcriptional factor OsDof25 was identified and cloned, whose probably orthologe is the maize ZmDof1, already identified and partially characterized. The ZmDof1 was also cloned for comparative analysis with OsDof25, in order to confirm this last one as ZmDof1 orthologe in rice. The constructions for Arabidopsis superexpression of these transcriptional factors were made using the cloning system of gateway technology (Invitrogen), to obtain the expression vectors 35S:ZmDof1:HA and 35S:OsDof25:HA. Lineages with different expression levels of these genes were obtained, but with only one inserted copy. These transgenic lineages when grown in a half strength of MS medium (10mM of NH4 + and 20mM of NO3 -) showed phenotypes with chloroses and growth difficulty; although when they were cultured in soil they showed great vegetative development and delay in the inflorescence emission. When analyzed the gene expression changes induced by the superexpression of these transcriptional factors, it was observed that both genes produced an increase in the expression levels of high and low affinity ammonium transporters (AMT1.1 and AMT2.1, respectively), indicating that these phenotypes may be due to the toxic effect of an excess of ammonium uptake. We also verified an increase of expression for pyruvate kinase (PK1 and PK2), and phosphoenolpyruvate carboxylase (PEPC1 and PEPC2). Pyruvate kinase converts phophoenolpyruvate (PEP) to pyruvate, and phosphoenolpyruvate carboxylase converts PEP to oxalacetate, which is substrate for malate dehydrogenase to form malate. Both pyruvate and malate may feed the Krebs cycle. In addition, there was an increase in the expression of isocitrate dehydrogenase, which is present in the citosol and mitochondria, needed for converting isocitrate to 2- oxoglutarate. Thus, it was hypothesized that the increase of expression levels of these carbon metabolism enzymes was necessary to increase the production of 2-oxoglutarate and, consequently, to reduce the toxic effect of ammonium uptaked. Besides, it was observed an increase of expression levels and activity of glutamate dehydrogenase (GDH). This enzime may work as much in the direction of glutamate amination as in deamination, when the plants were submitted to ammonium excess or carbon limitation conditions, respectively. / Com o objetivo de aumentar a efici?ncia de uso de nitrog?nio (EUN) em plantas, foi identificado e clonado o fator de transcri??o OsDof25 de arroz, cujo prov?vel ort?logo ? o ZmDof1 de milho, j? identificado e parcialmente caracterizado. Tamb?m foi clonado o ZmDof1 para an?lises comparativas com o OsDof25, a fim de comprovar que este ?ltimo ? realmente ort?logo do ZmDof1. As constru??es para superexpress?o destes fatores de transcri??o em Arabidopis foram feitas utilizando o sistema gateway de clonagem para obten??o dos vetores de express?o 35S:ZmDof1:HA e 35S:OsDof25:HA. Foram obtidas linhagens com diferentes n?veis de express?o destes genes, mas com apenas uma inser??o. As linhagens transg?nicas obtidas quando crescidas em meio MS ? for?a i?nica (10mM de NH4 + e 20mM de NO3 -) apresentaram fen?tipos como clorose e dificuldade de desenvolvimento, ao passo que quando cultivadas em solo mostraram desenvolvimento vegetativo mais intenso e atraso para emiss?o da infloresc?ncia. Quando analisadas as modifica??es de express?o g?nica causadas pela superexpress?o destes fatores de transcri??o, observou-se que ambos os fatores de transcri??o provocaram aumento de express?o dos transportadores de am?nio de alta e baixa afinidades (AMT1.1 e AMT2.1 respectivamente), indicando que o fen?tipo observado pode ser devido ao efeito t?xico do excesso de am?nio absorvido. Verificou-se tamb?m aumento de express?o das enzimas piruvato quinase (PK1 e PK2) e fosfoenolpiruvato carboxilase (PEPC1 e PEPC2). A piruvato quinase converte o fosfoenolpurato (PEP) a piruvato, enquanto a fosfoenolpiruvato carboxilase converte o PEP a oxalacetato (OAA) que pode sofrer a??o da malato desidrogenase originando o malato. Ambos os metab?litos, piruvato e malato, alimentam o ciclo de Krebs. Houve tamb?m aumento de express?o da isocitrato desidrogenase, enzima presente na mitoc?ndria (ciclo de Krebs) e no citosol que converte isocitrato a 2-oxoglutarato (2-OG). Assim, ? prov?vel que o aumento da express?o destas enzimas do metabolismo de carbono foi necess?rio para aumentar a produ??o de 2-OG e, por conseguinte, diminuir o efeito t?xico do excesso de am?nio absorvido. Al?m disso, observou-se aumento de express?o e atividade da glutamato desidrogenase (GDH). Essa enzima pode atuar tanto na dire??o da amina??o, quanto na dire??o da desamina??o, em condi??es de excesso de am?nio e/ou sob condi??es de limita??o de carbono nas plantas, respectivamente.

O sistema de captação de oligopeptideos (Opp), responsável pela captação de peptídeos com 3 ou mais resíduos de aminoácidos, representa um mecanismo importante de obtenção de nutrientes em bactérias. O operon Opp é constituído por 5 genes, sendo OppD e F responsáveis pela codificação dos componentes geradores, OppB e C codificantes para as proteínas que delimitam o poro da membrana e OppA que codifica o componente ligante. Neste trabalho identificamos uma alta identidade entre as proteínas OppA expressas por diferentes cepas de E. coli, 4 espécies do gênero Shigella ( 99 %) e diferentes sorovares de Salmonella enterica (85%) mas registramos a ocorrência de vários sítios polimórficos inter-específicos. A presença do gene OppA foi confirmada em 58 cepas diarreiogênicas de E. coli, Shigella e Salmonella. A partir da proteína OppA recombinante foi obtido soro policlonal específico que revelou a presença da proteína em todas as linhagens estudadas. Desta forma, concluímos que a proteína OppA está presente e conversada em espécies e linhagens dos três gêneros de Enterobacteriaceae estudados. / The oligopeptide uptake system (Opp), involved with the uptake of peptides formed by 3 or more amino acid residues, represent important nutrient uptake mechanism. The Opp operon is usually represented by 5 structural genes, including OppD and OppF encoding proteins involved generation of energy , OppB and OppC, encoding membrane proteins delimiting a pore and OppA encoding the protein responsible both for specificity and affinity of the transport system toward different peptide substrates. In this study, we demonstrated that the OppA proteins expressed by different E. coli strains,4 Shigella species (99%) and different serovars of Salmonella enterica (85%) were quite conserved but the occurrence of inter-species polymorphism was demonstrated. The OppA gene was detected in 58 diarrheogenic E. coli, Shigella and Salmonella strains. Using a recombinant OppA protein produced in E. coli, specific polyclonal sera were generated and successfully applied in the immunological detection of the proteins expressed by the tested strains. Thus, we conclude that the OppA protein is present and conserved among species and strains of the three test Enterobacteriaceae genera.

A cana-de-açúcar é uma cultura agrícola de grande importância econômica para o Brasil, e a expansão de seu cultivo para solos marginais requer uma maior utilização de fertilizantes à base de nitrogênio (N). Na maioria dos países produtores, a adubação nitrogenada se baseia em altas doses de aplicação, enquanto, no Brasil, o seu uso é relativamente baixo devido, em parte, ao processo de fixação biológica de nitrogênio (FBN) pela ação de bactérias diazotróficas. Além da FBN, as plantas adquirem fontes de N, como amônio e nitrato, por meio de transportadores de membranas localizados nas raízes. Há evidências que a associação com microrganismos pode favorecer as plantas por meio da regulação dos genes de transportadores de N. Desta forma, este trabalho teve como objetivo caracterizar o transporte de amônio e nitrato, avaliando a expressão gênica dos principais transportadores de N em cana-de-açúcar cultivada in vitro sob o efeito da associação com bactérias diazotróficas. Também foi descrita a comunidade bacteriana de plântulas in vitro, bem como o efeito da fertilização com N e da inoculação com bactérias diazotróficas em plantas maduras. Plântulas de \'SP70- 1143\' e \'Chunee\', que contrastam para FBN, foram empregadas em ensaios in vitro sob diversas concentrações e fontes de N em associação ou não com uma estirpe de Gluconacetobacter diazotrophicus ou um mistura de bactérias diazotróficas (G. diazotrophicus, Herbaspirillum seropedicae, H. rubrisubalbicans, Azospirillum amazonense e Burkholderia tropica). A caracterização do transporte de N por meio de ensaios de absorção de nitrato e amônio marcados (15N) revelou que a interação entre cana-de-açúcar x G. diazotrophicus induziu a expressão do gene do transportador de nitrato ScNRT2.1, o que levou a uma tendência no aumento no influxo de nitrato, assim como dos genes de transportadores de amônio ScAMT1.1 e ScAMT1.3, resultando em maiores influxos de amônio apenas para a cultivar \'SP70- 1143\'. Já a associação da cana-de-açúcar com a mistura de bactérias diazotróficas revelou que somente houve indução transcricional de ScAMT1.1, o que resultou na maior absorção de amônio em \'SP70-1143\'. Por sua vez, quando analisada a interação in vitro por 30 dias, a presença da bactéria, apesar de transiente, possivelmente favoreceu a expressão dos genes de transportadores de nitrato ScNRT1.1 e ScNRT2.1, e do transportador de amônio ScAMT1.1, resultando no maior acúmulo de 15N-nitrato de amônio nas plantas de \'SP70-1143\'. Foi detectada uma comunidade bacteriana associada a plântulas micropropagadas, a qual é distinta entre os genótipos \'SP70-1143\' e \'Chunee\' e se altera com a inoculação com G. diazotrophicus. Para as plantas cultivadas em campo, a comunidade bacteriana existente foi alterada pela fertilização de N, mas não pela inoculação com diazotróficas. Portanto, a inoculação com bactérias diazotróficas parece induzir a expressão dos principais genes transportadores de amônio e nitrato em plântulas do genótipo \'SP70-1143\' resultando na maior absorção de fontes inorgânicas de N. / Sugarcane has a large economic importance to Brazil, and it\'s the expansion of cultivation to marginal soils requires a larger application of nitrogen fertilizers (N) to maintain yield. In most producing countries, N fertilization is based on high application rates, whereas in Brazil N fertilization is relatively low, possibly due in part, to the process of biological nitrogen fixation (BNF). In addition, plants acquire inorganic N sources from the soil by membrane transporters that may be regulated by association with microorganisms. This study aimed to characterize the ammonium and nitrate transport evaluating the gene expression profile of the major transporters grown in vitro in association with diazotrophic bacteria. It was also described the bacterial community in micropropagated plants, as well as the effect of N fertilization or inoculation with nitrogen fixing bacteria in mature plants. \'SP70-1143\' and \'Chunee\' which contrasted to BNF, were used in in vitro experiments in several concentrations and N source, in association or not with a strain of Gluconacetobacter diazotrophicus or a bacteria mixture (G. diazotrophicus, Herbaspirillum seropedicae, H. rubrisubalbicans, Azospirillum amazonense and Burkholderia tropica). The characterization of the N transport by uptake assays with 15N-labeled ammonium and nitrate, revealed that the interaction between sugarcane x G. diazotrophicus induced, the nitrate transporter gene ScNRT2.1 expression, which lead to trend to increase nitrate influx, as well as the ammonium transporter genes ScAMT1.1 and ScAMT1.3, resulting in higher ammonium influx in \'SP70-1143\'. Sugarcane associated with the bacterial mixture revealed a transcriptional induction of ScAMT1.1 resulting in larger ammonium acquisition in \'SP70-1143\'. Further, the presence of bacteria in vitro for 30 days, although transient, possibly favored the expression of nitrate transporters ScNRT1.1 and ScNRT2.1, and the ammonium transporter ScAMT1.1, resulting in accumulation of 15N-ammonium nitrate in \'SP70-1143\'. A bacterial community associated with in vitro plants of \'SP70-1143\' and \'Chunee\' was detected with different composition between genotypes, and which changed with artificial inoculation. For plants grown in the field, the bacterial community was affected by N fertilization but not by inoculation with diazotrophic. These results indicate that the inoculation with diazotrophic bacteria appears to induce the expression of the major ammonium and nitrate transporters genes in \'SP70-1143\' plants resulting in higher uptake of inorganic N sources.

Les transporteurs à ATP binding cassette (ABC) peuvent transporter une grande variété de substrats utilisant l'ATP-Mg2+ comme source d'énergie. Ces transporteurs sont présents dans toutes les formes de vie et sont impliqués dans la résistance aux médicaments, comprenant les anticancéreux et les antibiotiques. Mes travaux de thèse se concentrent sur le transporteur BmrA (130 kDa) de Bacillus subtilis utilisé en tant que système modèle et homologue de la P-glycoprotéine humaine impliquée dans la multirésistance aux anticancéreux. Dans ces travaux nous montrons que la reconstitution de cette protéine dans les lipides de Bacillus subtilis répond aux deux exigences centrales pour RMN: haut rapport signal sur bruit et la stabilité de l'échantillon sur une période de plusieurs années. Les spectres obtenus indiquent une protéine bien repliée et une préparation très homogène, comme en témoignent les lignes de résonance étroites et la dispersion du signal typique de la distribution de structure secondaire attendue de la protéine membranaire. Nous avons adapté la méthode GRecon utilisée dans les études de microscopie électronique pour la reconstitution des protéines membranaires pour la RMN à l'état solide. Nous avons suivi en détail la reconstitution du transporteur ABC BmrA par dialyse comme référence, et établi des conditions optimales de reconstitution en utilisant un gradient combiné de saccharose / cyclodextrine / lipide caractérisant GRecon. Les spectres RMN de l‘échantillon reconstitué par GRecon sont très similaire à ceux obtenus précédemment sur des échantillons reconstitués par dialyse. La préparation d'échantillons par GRecon présente un gain de temps de près d'un ordre de grandeur. Afin d'étudier les états ouvert vers l'intérieur (inward-facing IF) et ouvert vers l'extérieur (outward-facing OF) du transporteur, nous avons développé un protocole reproductible et quantitatif induisant l'état OF. Nous avons enregistré des spectres bidimensionnels RMN à l'état solide avec différents temps de mélange (20 et 200 ms) afin de suivre les changements des déplacements chimiques et d'identifier les résidus par des corrélations séquentielles. L'apparition très apparente de nouveaux signaux concomitants à la grande amplitude des perturbations de déplacement chimique (CSP) met en évidence l'importante flexibilité et les changements conformationnels de la protéine en présence d'ATP: Mg2+. Afin d'identifier les résidus apparaissant dans les spectres, nous avons utilisé le remplacement paramagnétique du co-facteur Mg2+ par du Mn2+. Cette méthode a révélé que les acides aminés apparaissant dans les spectres sont situés à proximité du site de liaison de l'ATP. En outre, les mesures EPR ont confirmé l'état fermé de la protéine en identifiant la distance correspondant à 1,8 nm entre deux atomes de Mn2+. Nous avons étudié les différences conformationnelles entre l'état IF et OF de BmrA. L'observation de nombreux CSP, ainsi que l'apparition de nouveaux signaux sont observés pour un mutant ne pouvant pas hydrolyser l'ATP, indiquant que l'hydrolyse n'est pas nécessaire pour la transition IF à OF dans BmrA. Nous avons également analysé le mécanisme lié au motif X-loop décrit comme étant impliqué dans la communication entre deux domaines de la protéine. Nous avons observé pour une protéine mutante dans laquelle le transport est aboli mais qui reste ATPase active, une transition incomplète puisque seul un sous-ensemble de CSPs est observé, ainsi qu'un manque de rigidification. Ces mesures suggèrent que la flexibilité semble être le point central dans la transmission des changements conformationnels nécessaires de la partie motrice à la partie d'exportation de molécules. Ces observations montrent que ce système serait semblable à un moteur tournant à plein régime qui ne serait pas connecté de manière rigide à un arbre de transmission le reliant au système de transport / ATP binding cassette (ABC) transporters can translocate a variety of molecules by coupling drug/lipid efflux with an ATP-Mg2+ fuelled engine. They are found in all forms of life and they are involved in a number of drug resistances including anti-cancer drugs and antibiotics. My studies focus on the drug exporter BmrA (130 kDa) from Bacillus subtilis as a model system and homologue of the human P-glycoprotein that is involved in multidrug resistance in cancer. We show that the reconstitution of this protein in lipids from Bacillus subtilis at a lipid-protein ratio of 0.5 m/m allows an optimal protein insertion into lipid bilayer as well as it complies with the two central NMR requirements: high signal-to-noise in the spectra and sample stability over a time period of years. The obtained spectra point to a well-folded protein and a highly homogenous preparation, as witnessed by the narrow resonance lines and the signal dispersion typical of the expected secondary structure distribution of the membrane protein. In the same time, we adapted the GRecon method used in electron microscopy studies for membrane protein reconstitution to the needs of solid-state NMR sample preparation. We followed in detail the reconstitution of the ABC transporter BmrA by dialysis as a reference, and established optimal reconstitution conditions using the combined sucrose/cyclodextrin/lipid gradient characterizing GRecon. NMR spectra recorded on a sample produced by GRecon showed a highly similar fingerprint as those recorded previously on samples reconstituted by dialysis. GRecon sample preparation presents a gain in time of nearly an order of magnitude for reconstitution. In order to study the inward-facing (IF) and the outward-facing (OF) state of the transporter, we developed a reproducible and quantitative protocol of ATP:Mg2+:VO43- addition inducing the OF state. We used selectively labelled samples obtained by the addition of natural abundance residues in the bacterial medium in order to reduce the number of signals in the spectra of this large protein. We recorded solid-state NMR two-dimensional spectra with different mixing times (20 and 200 ms) in order to follow chemical shift changes and identify residues by sequential correlations. The very noticeable apparition of new signals concomitant with the large amplitude of chemical shift perturbations (CSPs) highlight the important flexibility and conformational changes of the protein in presence of ATP:Mg2+:VO43- substrate. In order to identify the residues appearing in the spectra, we use paramagnetic replacement by Mn2+ of the Mg2+ acting as a co-factor in the active site. The paramagnetic relaxation enhancements caused the Mn2+ revealed that the amino acids appearing in the spectra are located in proximity to the ATP binding pocket. Besides, EPR measurements confirmed the closed state of the protein by identifying the corresponding 1.8 nm distances between two Mn2+. We investigate on the conformational differences identified between the IF and OF state in the ABC transporter BmrA reconstituted in its natural lipids. The observation of numerous CSPs, as well as the apparition new signals are observed for a hydrolysis-incompetent mutant on addition of ATP, indicating that hydrolysis is not required for the IF to OF transition in BmrA. We also analyze the mechanistic of the X-loop motif described to be involved in the communication between two domains of the protein. We observe for a mutant protein in which transport is abolished, but which remains ATPase active, an incomplete transition since only a subset of CSPs is observed, as well as lack of rigidification. This suggests that the change in dynamics might be central for transmitting the relevant conformational changes to the part of the protein driving transport, concomitant of an engine which is turning an input shaft, but which fails to connect in a rigid manner, trough adequate gears, with the output shaft driving the pump

No description available.

I Sverige har handeln, sedan 60- och 70-talet, genomgått en omfattande strukturomvandling. Från att ha ägt rum i städernas centrum har den lokaliserats till allt mer perifera lägen - en trend som resulterat i de externa köpcentrum vi ser runt om i landet idag. Det kan konstateras att bilen spelat en stor roll i utvecklingen av externa köpcentrum; handelns omstrukturering hade inte kunnat ske om det inte vore för bilismens framväxt och den ökade mobilitet som den gav upphov till. I uppsatsens litteraturgenomgång konstateras att bilismen inte bara krympte avstånden utan även skapade nya, med en rad problem som följd, bland annat bilberoende transportstrukturer och negativ klimatpåverkan. Dessa transportstrukturer står i konflikt med miljökvalitetsmålet Begränsad klimatpåverkan, det miljökvalitetsmål som Regeringen anser är Sveriges högs prioriterade. Trots detta planeras och byggs externa köpcentrum runt om i Sverige idag. I uppsatsens fallstudie undersöks hur de externa köpcentrum Östra Torp i Uddevalla samt Haganäs i Älmhult planeras för gång-, cykel- och kollektivtrafikanter samt vilka hänsyn som tas till dessa transportmedel i planeringsfasen. För att kunna bedöma vilka hänsyn som tagits har en metod arbetats fram, vilken resulterat i en checklista innehållande viktiga planeringsprinciper för dessa transportmedel. Metoden baseras på vedertagna planeringsrekommendationer för gång-, cykel- och kollektivtrafik. Det kan konstateras att vid planeringen av de externa köpcentrum som undersökts har hänsyn tagits till gång-, cykel och kollektivtrafik, men detta har inte gjorts konsekvent, och således har planeringen brister som skulle kunna åtgärdas. Vidare kan konstateras att planeringen på området för det externa köpcentrumet främst utgått ifrån den bilburnes premisser vilket också har resulterat i en för externa köpcentrum karaktäristisk, bilorienterad utformning. Vidare undersöker uppsatsen hur dessa brister skulle kunna tillgodoses i ett avslutande gestaltningsförslag. Syftet är att visa på hur en alternativ planering skulle kunna gestaltas för att förbättra de fysiska förutsättningarna för mindre bilberoende trafikstrukturer och således resultera i resmönster vilka kan minska motsättningen mellan utformningen av externa köpcentrum och miljökvalitetsmålet Begränsad klimatpåverkan. Målet med uppsatsen är att undersöka om, och i så fall hur, motsättningen mellan miljökvalitetsmålet Begränsad klimatpåverkan och externa köpcentrums utformning kan motverkas genom att planera externa köpcentrum enligt studerade planeringsprinciper för gång-, cykel- och kollektivtrafik. I uppsatsen konstateras att det går att planera externa köpcentrum på ett sätt som förbättrar de fysiska förutsättningarna för gång-, cykel och kollektivtrafik, samt visa på en metod för hur detta kan göras. Med checklistan som hjälpmedel skulle misstag kunna avhjälpas i ett tidigt planeringsskede. Efterkonstruktioner kan därmed undvikas och den fysiska miljön eventuellt bli bättre. Vidare kan konstateras att metoden som framtagits specifikt för denna uppsats, i form av checklistan, utgår ifrån generella normer och resonemang och kan därför användas vid planering av andra externa köpcentrum.

The cytoplasm of eukaryotic cells contains several membrane-delimited compartments of specific molecular compositions and functions. Among those, the vacuole of fungal cells is often described as an organelle equivalent to the lysosomes of animal cells and the vacuoles of plant cells. These compartments indeed share two similar features: they contain a wide variety of hydrolases and are the most acidic compartments of the cell, which accounts for their key role in the intracellular degradation of macromolecules. In humans, dysfunctions of the lysosomes often give rise to lysosomal related diseases, such as lysosomal storage disorders. These are a class of metabolic disorders caused by the accumulation of non-degraded macromolecules or impaired export of hydrolytic degradation products. Cystinosis is an autosomal recessive disorder (1/200 000 incidence) generally associated with renal dysfunctions. It is caused by the accumulation and crystallization of cystine, the disulfide of cysteine, into the lumen of lysosomes. Cystinosin, the causative gene product of cystinosis, is present at the lysosomal membrane and catalyses the export of cystine from this compartment. The human cystinosin is a member of the Lysosomal Cystine Transporter (LCT) family. LCT proteins are conserved in all eukaryotic species and are defined by the presence of highly conserved PQ-loop motifs. <p>During this thesis work, we have studied three LCT proteins of the yeast Saccharomyces cerevisiae, named Ypq1, Ypq2 and Ypq3 (Yeast PQ-loop proteins 1, 2 and 3). We first showed that these proteins localize to the vacuolar membrane. We next studied the roles of these proteins, the regulation of their genes and the mechanisms and signals implicated in their delivery to the vacuolar membrane. We also contributed to the functional characterization of a mammalian homologue of yeast Ypq proteins, named rPqlc2. <p>In the first part of this work, we report that the Ypq proteins are most probably implicated in the export of basic amino acids from the vacuole to the cytosol. More precisely, Ypq2 and Ypq3 behave like vacuolar arginine and lysine exporters, respectively. Interestingly, the mammalian rPqlc2 protein expressed in yeast reaches the vacuolar membrane and functions as an orthologue of the Ypq proteins. Our results also reveal that the expression of the YPQ3 gene is regulated by the Lys14 transcription factor, responsible for the transcriptional activation of the LYS genes encoding enzymes implicated in the biosynthesis of lysine. We have also noted that, in general, the expression of the expression of the YPQ genes is regulated according to the quality of the nitrogen source available in the extracellular medium, eg. YPQ3 is sensitive to the nitrogen catabolite repression regulatory mechanism. <p>In the last part of this thesis work, we investigated the intracellular trafficking of the Ypq proteins and show that these predominantly reach the vacuolar membrane via the ALP (alkaline phosphatase) pathway due to the presence of a dileucine-based sorting signal in their sequences. Interestingly, a similar mechanism seems responsible for targeting to the yeast vacuole of the mammalian rPqlc2 protein.<p><p><p>Une caractéristique des cellules eucaryotes est leur organisation en compartiment internes délimité par une membrane lipidique, appelé organelles. Ces compartiments intracellulaires présentent une composition lipidique et protéique particulaire conforme à leur identité et fonction. Les lysosomes de cellules de mammifères et la vacuole fongique jouent un rôle clé dans la digestion intracellulaire de macromolécules et de ce fait leurs lumières sont enrichis d’enzymes hydrolytiques nécessaires à cette action. Des disfonctionnements du lysosome peuvent être la conséquence de pathologie chez l’homme, regroupé sous le nom de maladie lysosomale, lié à un à une accumulation de macromolécules non digéré ou un default d’export des produits d’hydrolysé depuis la lumière du lysosome. La cystinose est une maladie autosomale récessive avec une faible fréquence d’incidence (1/200 000) qui regroupe trois formes cliniques :deux formes rénales graves et une forme extra-rénale. Cette maladie est due à une accumulation et cristallisation de cystine dans la lumière du lysosome qui est corrélé à des mutations ponctuelles dans le gène CTNS qui code pour l’exporteur de cystine, la cystinosine. Cette protéine est un membre de la famille LCT (Lysosomal Cystine Transporter) qui possède des représentants chez les cellules animales, végétales et fongiques. Les protéines de la famille possèdent une taille et une topologie prédite similaire (7 segments transmembranaires) et on retrouve aussi au sein de ces protéines deux exemplaires de motifs PQ. Lors de ce travail de thèse nous nous sommes intéressés à trois membres de la famille LCT chez Saccharomyces cerevisiae que nous avons nommé Ypq1, Ypq2 et Ypq3 pour Yeast PQ-loop proteins. Ces protéines n’ayant pas fait l’objet de nombreuses études, nous nous sommes orientés vers une analyse fonctionnelle et transcriptionnelle. De plus, nous avons également étudié les mécanismes et signaux impliqué dans leur adressage vers la vacuole. Finalement, nous avons également inclus dans notre étude un homologue mammalien de ces protéines, rPqlc2. <p>\ / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

Fundação de Amparo a Pesquisa no Estado do Rio Grande do Sul / Animal models as reserpine are helpful to understand the pathophysiology of several diseases with involuntary movements, as Parkinson s disease (PD), and to search efficient treatments. The present study tested the effects of reserpine on behavioral alterations induced by reserpine in rats and worms, with emphasis in oxidative and dopaminergic parameters, and the effect of the antioxidant gallic acid (GA) in reserpine-exposed rats. As result, reserpine (1mg/Kg, sc, for 3 consecutive days) increased the frequency of vacuous chewing movements (VCMs) in rats in relation to controls, and maintained this increase for at least 3 days after reserpine withdrawal. Treatment with GA (4.5 , 13.5 or 40.5 mg/kg/day, po) for 3 days reverted reserpine-induced increase in VCMs, showing protective effect. Neither reserpine nor GA changed oxidative parameters (TBARS and DCFH-DA oxidation), antioxidant levels (proteic and non-proteic thiol) and the activity of Na+,K+-ATPase (total and α-subunit) in striatum and cortex. Afterward, studies were performed with Caenorhanditis elegans due its several advantages in studies of neurodegeneration and of drugs mechanism of action. L1-larval stage C. elegans were exposed to reserpine (30 ou 60 μM) for different times. Reserpine decreased the survival, development, food intake, locomotor rate on food and dopamine (DA) levels in worms and it had effect on egg laying and defecation cycles. Morphological evaluations of dopaminergic cephalic (CEP) neurons in BY200 worms (with GFP coupled to dat-1 gene) reveled neurodegeneration by: 1) decreased fluorescence intensity, 2) decreased the number of intact neurons, and 3) increased the number of shrunken somas per worm. These effects were unrelated to reserpine s effect on dat-1 gene expression. Interestingly, the reserpine effects on locomotor rate, dopaminergic CEP neurons morphology and dat-1 gene expression were reverted after reserpine withdrawal. Furthermore, reserpine decreased the survival of vesicular monoamine transporter (VMAT) and dat-1 loss-of-function mutant worms, but no of tyrosine hydroxylase (TH, cat-2) and dopaminergic receptors (dop-1, dop-2, dop-3 e dop-4) loss-of-function mutants in relation to wild-type N2 worms. Reserpine also decreased the survival of worms pre-exposed to DA; and it activated SKN-1 detoxification pathway. Moreover, no differences were found in DAT and TH immunoreactivity in striatum of rats treated with reserpine and/or GA. The GA protective effects against reserpine-induced VCMs in rats are probably not related to its antioxidant and antiapoptotic properties or monoamine oxidase (MAO) inhibition. As conclusion, the reserpine decreases DA levels though action on VMAT, and it induces neurotoxicity/neurodegeneration due probably an increase on extracellular DA contents resulted from changes on DAT function. More studies evaluating the reserpine effect on DAT and the GA mechanism of protection are necessary. / Modelos animais como o da reserpina auxiliam no entendimento da fisiopatologia de diversas doenças que se manifestam por movimentos involuntários, como a doença de Parkinson (DP), e na busca por formas de tratamento. O presente trabalho avaliou mecanismos envolvidos na indução de alterações comportamentais induzidas por reserpina em ratos e vermes com ênfase em parâmetros oxidativos e dopaminérgicos, e a ação do antioxidante ácido gálico (AG) em ratos tratados com reserpina. Como resultado, a reserpina (1mg/Kg, sc, por 3 dias consecutivos) aumentou a frequência de movimentos de mascar no vazio (MMVs) em ratos em relação ao controle, e manteve esse aumento por pelo menos 3 dias após o término das administrações da reserpina. O tratamento com AG (4,5 ou 13,5 ou 40,5 mg/kg/day, vo) por 3 dias reverteu esse aumento dos MMVs, mostrando efeito protetor. Nem reserpina nem o AG alteraram os parâmetros avaliados de dano oxidativo (TBARS e oxidação da DCFH-DA), de antioxidantes (tiol protéico e não protéico) e a atividade da Na+,K+-ATPase (total e α-subunidade) no estriado e córtex cerebral. Estudos posteriores foram realizados em Caenorhanditis elegans devido as diversas vantagens oferecidas por esse modelo animal em estudos de neurodegeneração e de investigação do mecanismo de ação de drogas. C. elegans em estágio larval L1 foram expostos a reserpina (30 ou 60 μM) por diferentes tempos. A reserpina reduziu a sobrevivência, o desenvolvimento, a ingestão de alimento, a atividade locomotora na comida e as concentrações de dopamina (DA) nos vermes, e afetou a postura de ovos e tempo entre defecações. Análise da morfologia dos neurônios dopaminérgicos cefálicos (CEP) de vermes BY200 (com GFP acoplado ao gene dat-1) indicam neurodegeneração por: 1) redução da intensidade da fluorescência, 2) redução do número de neurônios intactos e 3) aumento do número de somas atrofiados por verme em relação ao controle. Esses efeitos não estão relacionados a efeitos da reserpina na expressão do gene dat-1. Interessantemente, os efeitos da reserpina na atividade locomotora, na morfologia dos neurônios CEP e na expressão do gene dat-1 foram revertidos após a retirada dos vermes da exposição a reserpina. Em adição, a reserpina reduziu a sobrevivência de vermes deficientes do transportador vesicular de monoaminas (TVMs, cat-1) e do transportador de DA (DAT, dat-1), mas não alterou a sobrevivência de deficientes da tirosina hidroxilase (TH, cat-2) e dos receptores dopaminérgicos (dop-1, dop-2, dop-3 e dop-4) em relação aos vermes selvagens N2. A reserpina também reduziu a sobrevivência de vermes N2 pré-expostos a DA, e ativou a via de detoxificação SKN-1 dos vermes. Alterações na imunoreatividade ao DAT e a TH no estriado de ratos tratados com reserpina e/ou AG não foram encontradas. O efeito protetor do AG nos MMVs induzidos por reserpina em ratos parece não envolver sua atividade antioxidante, antiapoptótica ou na monoaminoxidase (MAO). Como conclusão, a reserpina age no TVMs causando depleção de DA, e causa neurotoxicidade/neurodegeneração dopaminérgica devido provavelmente a um acúmulo de DA no espaço sináptico resultande de uma interferência no funcionamento do DAT. Mais estudos avaliando a ação da reserpina no DAT e o mecanismo de proteção do AG são necessários.

Solute carriers (SLCs) are membrane-bound transporter proteins, important for nutrient, ion, drug and metabolite transport across membranes. A quarter of the human genome codes for membrane-bound proteins, and SLCs make up the largest group of transporter proteins. Due to their ability to transport a large repertoire of substances across, not just the plasma membrane, but also the membrane of internal organelles, they hold a key position in maintaining homeostasis affecting metabolic pathways. Unfortunately, some of the more than 400 identified SLCs are still not fully characterized, even though a quarter of these are associated with human disease. In addition, there are about 30 membrane-bound proteins with strong resemblance to SLCs, of which very little is known. The aim of this thesis is to characterize some of these putative SLCs, focusing on their localization and function in the central nervous system. Since many of the known SLCs play a vital part in metabolism and related pathways, the response to different nutritional conditions has been used as a key method. MFSD14A and MFSD14B, characterized in Paper I, are putative SLCs belonging to the Major Facilitator Superfamily (MFS) and found to be neuronal, differentially expressed in the mouse central nervous system and transiently upregulated in mouse embryonic cortex cultures due to amino acid deprivation. They were also altered in areas of the mouse brain after starvation as well as after high fat diet. In Paper II, the effect on gene regulation due to complete amino acid starvation was monitored in a mouse hypothalamic cell line and 47 different genes belonging to SLCs, or putative SLCs, were found to be affected. Of these, 15 genes belonged to already known amino acid transporters, whereas 32 were putative SLCs with no known function or SLCs not known to react to amino acids. The three SV2 proteins, SV2A, SV2B and SV2C, were studied in Paper III using human neuroblastoma cell lines. The high metabolic state of cancers often result in an upregulation and alteration of transporter proteins, and alterations of the SV2 proteins were found following different treatments performed in this study. Paper IV focused on putative SLCs of MFS type and their role in glucose metabolism. Mouse embryonic cortex cultures were subjected to glucose starvation and the gene expression of 19 putative transporters were analyzed. All but four of the putative transporters were affected either at 3h or 12h of glucose deprivation. In conclusion, several SLCs and putative SLCs studied in this thesis are strongly affected by alteration in metabolism, either due to amino acids or glucose or both. This makes the putative SLCs dynamic membrane-bound proteins, possibly transporters, highly affected by nutritional status and most likely regulated to maintain homeostasis.

La schizophrénie est une maladie mentale grave qui se caractérise par un spectre hétérogène de manifestations cliniques. L’utilisation des antipsychotiques depuis la fin des années 1940 pour traiter la maladie ne permet au mieux que d’aider à contrôler certains symptômes et n’arrive pas à enrayer son décours. Ceci est particulièrement vrai pour le traitement des symptômes cognitifs (troubles attentionnels, de mémoire, et surtout troubles de la fonction exécutive) qui sont au cœur de la maladie. L’amélioration des performances cognitives des malades par les différents traitements ne peut être considérée comme un succès et il semble que ce soit un rendez-vous manqué tant les besoins thérapeutiques pour traiter ces symptômes sont essentiels dans la schizophrénie. Dans cette thèse nous avons étudié les déficits de la fonction exécutive dans un modèle hyperdopaminergique, les DAT-KO, qui sont des souris invalidées pour le gène du transporteur de la dopamine (DA). [...]. Nous avons dans un premier temps caractérisé notre modèle animal dans l’Attentional Set-Shifting Test (ASST) qui est un équivalent chez le rongeur du Wisconsin Card Sorting Test (WCST), un test permettant de mesurer chez l’Homme les performances de la fonction exécutive. Nous avons démontré que les DAT-KO présentent des performances déficitaires dans l’ASST, conformément à notre hypothèse. En utilisant des antagonistes spécifiques des récepteurs, D1 (le SCH23390) et D2 (le sulpiride) nous avons démontré que le SCH23390 améliorait les performances des souris DAT-KO dans l’ASST contrairement au sulpiride. Ce résultat nous a permis de suggérer que l’hyperdopaminergie, responsable de l’altération de la fonction exécutive des DAT-KO, aurait pour conséquence la sur-activation des récepteurs D1. Nous avons par la suite cherché à voir si l’on peut établir un lien direct entre hyperdopaminergie dans le mPFC qui est reconnu pour être la région traitant le set-shifting et le déficit comportemental. Nous avons modifié la transmission DAergique de deux façons complémentaires, soit par une induction pharmacologique avec un inhibiteur du DAT, le GBR12935, soir par une induction par optogénétique chez les souris DATcre/ChR2 exprimant la Channel Rhodopsin dans les neurones DAergiques. Avec ces deux modèles, nous avons pu montrer que l’action de la DA sur l’altération de la fonction exécutive passait par une sur-activation de la neurotransmission D1 et non D2. Néanmoins, la modulation de l’activité des neurones du PFC par la DA n’est pas uniforme. Elle module les fonctions du PFC en faisant appel à des neurones ayant un rôle spécialisé. Nous avons donc voulu essayer d’établir les mécanismes pouvant être mis en jeu pendant le set-shifting et ainsi essayer d’identifier le substrat neuronal pouvant être impliqué dans la fonction exécutive. A l’aide de deux marqueurs de l’activité neuronale, c-fos et P-ERK, nous avons pu établir que l’activité des neurones du cortex prélimbique (PrL) augmentait pendant une tâche de set-shifting. Nous avons aussi corrélé la modulation par les antipsychotiques du niveau de performance des DAT-KO dans le set-shifting avec le niveau d’activité du PrL et nous avons pu identifier le profil d’activation des deux principales populations neuronales du PFC, les neurones pyramidaux glutamatergiques et les interneurones GABAergiques. Nous avons pu relier ce profil d’activation avec la modulation comportementale des DAT-KO par les antipsychotiques mais aussi par d’autres ligands pharmacologiques actuellement à l’étude comme complément ou traitement alternatif aux antipsychotiques, le LY3979268, un agoniste mGluR2/3 et le CDPPB, un potentiateur mGluR5. L’ensemble de ces résultats nous a permis de mieux comprendre les effets de l’hyperdopaminergie sur le set-shifting mais aussi de pouvoir commencer à identifier le support neuronal de la modulation dopaminergique de la fonction exécutive. / Schizophrenia is a severe mental illness with a large spectrum of clinical manifestations. Since the introduction of antipsychotic medications in the 40’s, only modest progress has been made in the treatment of the disease. Currently used antipsychotics have only partial efficacy, controlling positive symptoms but usually failing to stop the mental decline of the patient. This lack of full-blown efficacy is particularly evident in the treatment of executive function deficits, which are now considered as core symptoms of schizophrenia. Increased dopamine (DA) neurotransmission is considered as a core neurochemical alteration in schizophrenia and all prescribed antipsychotics are dopamine-D2 receptor antagonists. In addition, major cognitive functions that are disarrayed in schizophrenia depend on proper DA regulation. However, there are no studies investigating the link between increased DA-ergic tone and executive function. The present thesis focuses on executive function deficits in a hyperdopaminergic mouse model, the genetically engineered mouse that lacks the dopamine transporter (DAT; DATKO mouse). First, we characterized our animal model in the Attentional Set-Shifting Test (ASST), which is a rodent adaptation of the Wisconsin Card Sorting Test, a test used to evaluate executive function in humans. DATKO mice had impaired performances in the ASST, confirming our working hypothesis. Systemic administration of the selective D1 antagonist SCH23390 ameliorated the performance of the DATKO in the ASST. In contrast, the D2 antagonist sulpiride had no effect, suggesting that the overactivation of D1 (but not D2) receptors might be involved in hyperdopaminergia-induced ASST deficits. To further investigate a possible causal link between elevated DA and ASST deficits we have induced a hyperdopaminergic state selectively in the prefrontal cortex (PFC), the region involved in executive function. This was done (i) pharmacologically, with local microinfusions of the DAT inhibitor GBR12935; (ii) optogenetically, by generating and utilising a novel transgenic tool the DATcre/ChR2 mice which express Channel-Rhodopsin selectively in DA-ergic neurons. In both constructs, PFC hyperdopaminergia resulted in ASST deficits. These, were reversed with SCH23390 but not with sulpiride, clearly establishing a role for D1 receptors in the deleterious effects of PFC hyperdopaminergia on executive function. It has been postulated that dopamine modulates PFC synaptic plasticity and associated cognitive functions through two distinct but interconnected neuronal populations: glutamatergic (Glu-) pyramidal neurons and GABA- interneurons. Immunocytochemistry experiments combining neuronal activation markers (p-ERK; c-fos) and selective labelling of Glu- versus GABA- neurons allowed to parse the role of these two populations in the ASST. A balaced Glu- versus GABA- activation was necessary for a succesful ASST performance. A dysregulated pattern of Glu- versus GABA- activation correlated with ASST deficits, leading us to speculate a putative link between cortical hyperdopaminergia and cortical Gluhypoactivation. Interestingly, glutamatergic ligands such as the mGluR2/3 agonist LY3979268 and the mGluR5 potentiator CDPPB (which are under current investigation in schizophrenia) corrected both the behavioral deficits and the altered neuronal activation pattern of hyperdopaminergic mice in the ASST. Overall, this work: (i) demonstrates for the first time a causal link between PFC hyperdopaminergia and executive deficits; (ii) proposes and validates a new model to study the cellular, molecular and synaptic mechanisms underlying executive dysfunction; (iii) suggests D1 receptor antagonism, in adjunct with current antipsychotic medications, as a novel therapeutic strategy to treat cognitive dysfunction in schizophrenia.