Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

Nas últimas décadas a medicina nuclear tornou-se uma grande aliada no auxílio ao diagnóstico de doenças e também para o tratamento do câncer. Parte deste sucesso está relacionada à constante pesquisa e desenvolvimento de novos radiofármacos. Uma classe de molécula que vem se mostrando promissora para o tratamento de tumores, tanto na sua forma orgânica quanto na forma de complexos organo-metálicos, é a tiossemicarbazona e seus derivados, os quais também podem formar complexos com radioisótopos metálicos dando origem a radiofármacos para diagnóstico e terapia. Neste trabalho foram preparados complexos com o ligante benzil-5-hidroxi-3-metil-5-fenil-4,5-diidro-1H-pirazol-1-carboditionato (H2bdtc) com os radioisótopos [99mTc]tecnécio, (67/68Ga)gálio e (111In)índio, e foram avaliados a pureza radioquímica, Log P e a estabilidade na presença de L-cisteína, L-histidina, soro albumina humana (SAH) e plasma de sangue humano; também foram avaliadas a taxa de captação dos radiofármacos in vitro em células de melanoma murino B16F10 e TM1M, além da avaliação da captação ex vivo e in vivo utilizando camundongos C57B/6 inoculados com as duas linhagens tumorais. Com o [99mT]tecnécio foram obtidos dois complexos diferentes, dependendo da concentração do PBS na solução, sendo que em um deles foi possível confirmar sua estrutura como [[99mTc]O(bdtc)(Hbdtc)] a partir do complexo de rênio [ReO(bdtc)(Hbdtc)], o outro complexo de [99mTc]tecnécio, bem como de (67/68Ga)gálio e (111In)índio não tiveram a estrutura caracterizada. A eficiência de marcação dos complexos foi superior a 90 %, com Log P maior que 1 para os complexos [[99mTc]O(bdtc)(Hbdtc)], [[99mTc]-bdtc] e [67/68Ga-bdtc] e 0,9 para [111In-bdtc]. Todos os complexos se mostraram com boa estabilidade na presença de L-cisteína e L-histidina, principalmente na primeira hora de incubação, mas não o foram na presença de SAH e plasma. A captação in vitro dos complexos em células B16F10 e TM1M variou entre 0,6 % e 1,8 %, e nos estudos de biodistribuição ex vivo foi obesrvada intensa e persistente captação hepática e no baço, superando 90 %, e captação no tumor variando de 0,2 % a 3 %, enquanto que nas imagens in vivo não foi possível observar de forma uma adequada captação nos tumores a ponto de permitir o uso como agente de diagnóstico. Os resultados permitem concluir que os complexos de derivados tiossemicarbazonas podem formar complexos com diferentes metais, mas novos derivados devem ser preparados para tentar melhorar o desempenho nos sistemas biológicos. Os experimentos com animais foram aprovados pela Comissão de Ética em Pesquisa da Faculdade de Medicina - USP, processo 372/12 / In recent decades, nuclear medicine has been used as diagnostic agent for disease and for the treatment of cancer. Part of this success is related to the constant research and development of new radiopharmaceuticals. Thiosemicarbazone and their derivatives have proven to be promising agent for the treatment of tumors, both in its organic form or as organo-metallic complexes. Also, they can to form complexes with metal radioisotopes giving radiopharmaceuticals for diagnosis and therapy. In this work we prepared complex of benzyl-5-hydroxy-3-methyl-5-phenyl-4,5-dihydro-1H-pyrazol-1-carboditionato (H2bdtc) with radioisotopes [99mTc]technetium (67/68Ga)gallium and (111In)indium and the radiochemical purity, Log P and stability in the presence of L-cysteine, L-histidine, human serum albumin (HSA) and human blood plasma were assessed; also were assessed the in vitro uptake rate of radiopharmaceuticals in murine melanoma cells B16F10 and TM1M, besides the evaluation of ex vivo uptake and in vivo using C57Bl/6 mice inoculated with both tumor lines. With [99mT] technetium two different complexes were obtained, depending on the concentration of the PBS in the solution, and one of them was had its structure to confirm as [[99mTc]O(bdtc)(Hbdtc)] from the standard rhenium complex [ReO(bdtc)(Hbdtc)], the other [99mTc] echnetium complex as well as (67/68Ga)gallium and (111In)indium not have characterized the structure. The labeling efficiency of compleos was higher than 90%, with log P higher than 1 for the complexes [[99mTc]O(bdtc)(Hbdtc)], [[99mTc]-bdtc] and [(67/68Ga)-bdtc] and 0.9 to [111In-bdtc]. All the complexes showed good stability in the presence of L-cysteine and L-histidine, especially in the first hour of incubation, but not in the presence of HSA and plasma. The uptake in vitro complexes in B16F10 and TM1M cells varied between 0.6% and 1.8%, and in ex vivo biodistribution studies was obesrvada intense and persistent liver uptake and spleen, exceeding 90%, and tumor uptake in changing from 0.2% to 3%, while in vivo imaging was not possible to observe a properly uptake in tumors, not allowing to use these molecules as a diagnostic agent. The results indicate that the thiosemicarbazone derivative complex can give complexes with different metals, but new derivatives should be prepared to try to improve performance in biological systems. The animal experimentation was approved by Comissão de Ética em Pesquisa da Faculdade de Medicina - USP, proccess 372/12

Le sujet de cette thèse porte sur la synthèse de ligands de type bis-NHC (carbène N-Hétérocyclique) et leur réactivité vis-À-Vis des complexes d’argent(I), de cuivre(I) et de nickel(II).Après avoir exploré les différentes méthodologies de synthèse des complexes de nickel(II) bis-NHC, le but était de tester leurs activités en catalyse d’oligomérisation de l’éthylène. Une série de nouveaux complexes d’argent(I) et de cuivre(I) fut synthétisée. Cinq voies furent testées pour la formation de complexes de nickel. Les résultats les plus probants furent obtenus par transmétallation à partir des complexes d’iodure ou de bromure d’argent(I). / The purpose of this work was the synthesis of bis-NHC (N-Heterocyclic carbene) ligands, theformation of the corresponding silver(I), copper(I) and nickel(II) complexes and the assessment ofthe catalytic activity of the bis-NHC nickel(II) complexes in ethylene oligomerization. A series of new bis-NHC silver(I) and copper(I) complexes was synthesized. Five different synthetic routes were tested for the formation of nickel(II) bis-NHC complexes. The most significant results were obtained by transmetalation from the silver(I) iodide or bromide complexes.

L’autoassemblage de diverses biomolécules pour former des complexes moléculaires est à la base de la machinerie cellulaire et des processus biologiques qui s’y rattachent. Il est typiquement considéré qu’un assemblage de plusieurs protéines offre des avantages régulatifs comparativement à une structure protéique similaire construite avec une ou un nombre inférieur de composantes. Ces assemblages offrent, par exemple, la possibilité de contrôler l’activité d’un complexe grâce à la dépendance directe de l’assemblage sur la concentration de ces composantes. De plus, la coopérativité d’interaction entre ces diverses composantes ouvre la voie vers l’obtention de nouveaux mécanismes de régulation. Toutefois, les avantages et les inconvénients directement reliés au nombre de composantes impliquées dans un assemblage ne sont pas totalement bien compris puisque les protéines ont évolué et ont divergé suivant des millions d’années d’évolution. L’objectif principal de cette thèse est d’abord de créer un modèle moléculaire simplifié permettant de mieux comprendre les avantages coopératifs des autoassemblages biologiques pour ensuite s’en inspirer afin de mettre au point de nouveaux mécanismes moléculaires permettant d’optimiser la plage dynamique d’interrupteurs moléculaires autoassemblés. En même temps, il sera possible de mettre en lumière certains avantages évolutifs qui ont poussé les protéines à acquérir plus de composantes moléculaires. Tout d’abord, la création d’assemblages moléculaires fut effectuée en fragmentant une structure unimoléculaire en plusieurs fragments qui pourront, grâce à leurs interactions, reformer la structure originale. Grâce à une nanostructure simple d’ADN, c.-à-d. une jonction à trois branches, il fut possible d’étudier directement l’impact du nombre de composantes sur la fonctionnalité et la régulation d’assemblages multimériques. Il fut observé, malgré l’association plus lente d’un assemblage de trois composantes, que ce même assemblage s’associe de manière plus coopérative tout en permettant la création de nouveaux mécanismes de régulation (p. ex. plage dynamique étendue, auto-inhibition et minuterie moléculaire). Ce système simplifié d’ADN a donc permis de conclure que la fragmentation d’une nanostructure en plusieurs composantes est une méthode simple permettant d’optimiser un nanosystème artificiel ou naturel. Ensuite, une autre méthode de création d’assemblages moléculaires fut étudiée. Celle-ci consiste à fusionner des domaines interagissant par le biais d’un espaceur. Dans une telle stratégie, l’espaceur est appelé à jouer un rôle important dans les propriétés de l’assemblage. Ainsi, en utilisant le même modèle d’ADN à trois composantes, il fut en effet observé que les propriétés de l’espaceur (p. ex. sa longueur, sa composition ou sa nature chimique) affectent grandement les propriétés d’assemblage d’un système à trois composantes (p. ex. sa stabilité, son niveau de coopérativité ou sa plage dynamique d’assemblage). En effectuant une étude thermodynamique approfondie sur divers assemblages trimériques d’ADN, il fut découvert qu’un espaceur optimal stabilise l’association des diverses composantes en créant une structure plus compacte où les espaceurs se cachent au coeur de la jonction. Il fut aussi démontré qu’en optimisant l’espaceur, il est possible de programmer précisément la plage dynamique d’un assemblage moléculaire à trois composantes. Finalement, ces découvertes sur les avantages d’un assemblage à trois composantes ont permis la création d’une nouvelle stratégie afin d’optimiser la plage dynamique d’interrupteurs moléculaires. À l’inverse des activateurs allostériques classiques qui altèrent la force d’interaction d’un ligand, c.-à-d. le KD, en modifiant la conformation de l’interrupteur, un activateur multivalent permet de programmer précisément la plage dynamique de l’interrupteur en exploitant une nouvelle surface d’interaction grâce à la formation d’un assemblage à trois composantes. Cette nouvelle stratégie d’optimisation des interrupteurs moléculaires fut validée grâce à une tige-boucle d’ADN servant comme balise moléculaire. Cette preuve de concept permet de démontrer la viabilité des assemblages moléculaires pour conceptualiser de nouvelles nanotechnologies avec une plage dynamique optimisée. Il est donc possible d’imaginer que les assemblages moléculaires auront un impact immédiat dans divers domaines de la nanotechnologie comme en diagnostic médical, en délivrance contrôlée de médicaments ou en imagerie moléculaire. / The self-assembly of various biomolecules to form molecular complexes is at the basis of the cellular machinery and their related biological processes. It is typically thought that an assembly of several proteins provides regulatory advantages compared to a similar protein built with one or fewer molecular components. These molecular assemblies offer, for example, the possibility to control their activity through the direct dependency of the assembly on the concentration of its components. Moreover, the cooperativity of interaction between their multiple components opens the door to acquiring novel regulation mechanisms. However, the advantages and disadvantages directly related to the number of components involved in an assembly are not totally understood since proteins have evolved and diverged over millions of years of evolution. The main objective of this thesis is to first create a simplified molecular model that will enable to better understand the cooperative advantages of biological self-assemblies. Then, inspired by these new understandings, novel molecular mechanisms will be developed to enable the optimization of the dynamic range of self-assembled molecular switches. Meanwhile, it will be possible to highlight some advantages that have pushed proteins to acquire more molecular components. The creation of molecular assemblies was demonstrated by fragmenting a nanostructure into multiple fragments which, through their intermolecular interactions, reassemble into the original structure. Using a simple DNA-based nanostructure, i.e., a three-way junction, it was possible to directly study the impact of the number of components on the functionality and regulation of multimeric assemblies. It was found that despite the slower assembly rate of a three-component assembly, this same assembly undergoes a more cooperative assembly enabling the creation of new regulatory mechanisms (e.g., extended dynamic range, self-inhibition and molecular timers). This simplified DNA-based system has therefore made it possible to conclude that fragmenting a nanostructure into multiple components is a simple method to optimize an artificial or a natural nanosystem. Next, another method to create molecular assemblies was studied. This method consists in fusing interacting domains through a linker. In this strategy, the linker will play an important role in dictating the properties of the assembly. Therefore, by using the same three-component DNA-based model, it has been observed that the chemical properties of the linker (e.g., its length, its composition, or its chemical nature) considerably affect the assembly properties of a three-component system (e.g., its stability, its level of cooperativity, or its dynamic range). Through an exhaustive thermodynamic study on various trimeric DNA-based assemblies, it was determined that the optimal linker stabilizes the association of all components by creating a more compact assembly where the linkers are buried within the core of the junction. It was also demonstrated that the optimization of the linkers allows to precisely program the dynamic range of the assembly. Finally, these discoveries on the advantages of a three-component assembly have enabled the creation of a new design strategy to optimize the dynamic range of molecular switches. In contrast to the classic allosteric activator which alters the affinity of a ligand (i.e., the KD) by changing the conformation of the switch, a multivalent activator enables to precisely program the dynamic range of a switch by exploiting a new interacting interface through the formation of a three-component assembly. This new strategy to optimize molecular switches was validated using a DNA-based molecular beacon. This proof of concept demonstrates the viability of molecular assemblies to design novel nanotechnologies with optimized dynamic range. It is possible to imagine that these molecular assemblies could have a direct impact on multiple fields of nanotechnology including medical diagnostics, controlled drug delivery and molecular imaging.

Different aspects of interaction of metals other than iron with metallophore mixtures were elucidated. Metal chelation besides iron and greater than with pure desferrioxamine B is documented by enhanced performance of soil mineral dissolution following application of diverse metallophore mixtures. New insights from genome to product of metallophores from Gordonia rubripertincta CWB2 under different cultivation conditions and under metal stress, particularly induced by rare earth elements are given. This evaluation led to increase by a factor of 13. Structure analyses showed that the strain produces citrate and different desferrioxamines. A robust RP-HPLC-based method quantified metal complexation. Further metal immobilization methods for metallophores for metal extraction from solutions with low concentrations were established. Moreover, catechol and hydroxamate metallophores from Arthrobacter oxydans ATW2 and Kocuria rosea ATW4 demonstrate the enhancement of Ge and rare earth element bioavailability, plant growth promotion and phytoextraction potential.:CONTENTS Abstract ..........................................................................................................1 CHAPTER 1 Introduction ......................................................................................5 CHAPTER 2 Mobilization of trace elements in soil extracts by bacterial siderophores in dependence of the pH-value..................................31 CHAPTER 3 Cultivation dependent formation of siderophores by Gordonia rubripertincta CWB2........................................................................41 CHAPTER 4 Data on metal-chelating, -immobilization and biosorption properties by Gordonia rubripertincta CWB2 in dependency on rare earth adaptation.......................................................................................67 CHAPTER 5 Analysis of desferrioxamine-like siderophores and their capability to selectively bind metals and metalloids: development of a robust analytical RP-HPLC method. ..........................................................97 CHAPTER 6 Secondary metabolites released by the rhizosphere bacteria Arthrobacter oxydans and Kocuria rosea enhance plant availability and soil–plant transfer of germanium (Ge) and rare earth elements (REEs) .........................................................................................120 CHAPTER 7 Conclusion remarks and further perspectives ...............................154 References .......................................................................................................162 Acknowledgement .........................................................................................185 Curriculum Vitae ..........................................................................................187 List of publications ..........................................................................................189 List of oral and poster presentations ..........................................................190 List of proceedings ..........................................................................................191 / En este trabajo se han dilucidado diferentes aspectos de la interacción de los metales con las mezclas de metalóforos desde distintos ángulos. La quelación de metales por debajo del hierro se pone de manifiesto en la mejora del rendimiento de la disolución de los minerales del suelo debido a la aplicación de diversas mezclas de metanóforos en comparación con la deferoxamina B pura. Se ofrecen nuevos conocimientos desde el genoma hasta el producto de los metanóforos de Gordonia rubripertincta CWB2 en diferentes condiciones de cultivo y bajo estrés por metales, especialmente inducido por elementos de tierras raras. Esta evaluación condujo a una sobreproducción de un factor de 13. El análisis estructural muestra que la cepa produce citrato y diferentes desferrioxaminas. Un método robusto basado en RP-HPLC cuantificó la complejación de metales. Se establecieron otros métodos de inmovilización de metales para la extracción de metales a partir de soluciones poco concentradas. Además, los metalóforos de catecol e hidroxamato de Arthrobacter oxydans ATW2 y Kocuria rosea ATW4 demuestran la mejora de la biodisponibilidad de GE y REE, la promoción del crecimiento vegetal y el potencial de fitoextracción.:CONTENTS Abstract ..........................................................................................................1 CHAPTER 1 Introduction ......................................................................................5 CHAPTER 2 Mobilization of trace elements in soil extracts by bacterial siderophores in dependence of the pH-value..................................31 CHAPTER 3 Cultivation dependent formation of siderophores by Gordonia rubripertincta CWB2........................................................................41 CHAPTER 4 Data on metal-chelating, -immobilization and biosorption properties by Gordonia rubripertincta CWB2 in dependency on rare earth adaptation.......................................................................................67 CHAPTER 5 Analysis of desferrioxamine-like siderophores and their capability to selectively bind metals and metalloids: development of a robust analytical RP-HPLC method. ..........................................................97 CHAPTER 6 Secondary metabolites released by the rhizosphere bacteria Arthrobacter oxydans and Kocuria rosea enhance plant availability and soil–plant transfer of germanium (Ge) and rare earth elements (REEs) .........................................................................................120 CHAPTER 7 Conclusion remarks and further perspectives ...............................154 References .......................................................................................................162 Acknowledgement .........................................................................................185 Curriculum Vitae ..........................................................................................187 List of publications ..........................................................................................189 List of oral and poster presentations ..........................................................190 List of proceedings ..........................................................................................191 / Es wurden verschiedene Aspekte der Wechselwirkung von anderen Metallen als Eisen mit Metallophormischungen untersucht. Die Chelatbildung mit anderen Metallen als Eisen, die größer ist als bei reinem Desferrioxamin B, wird durch eine verbesserte Leistung bei der Auflösung von Bodenmineralien nach Anwendung verschiedener Metallophormischungen dokumentiert. Es werden neue Erkenntnisse vom Genom bis zum Produkt von Metallophoren aus Gordonia rubripertincta CWB2 unter verschiedenen Anbaubedingungen und unter Metallstress, insbesondere induziert durch Seltene Erden, gegeben. Diese Auswertung führte zu einer Steigerung um den Faktor 13. Strukturanalysen zeigten, dass der Stamm Citrat und verschiedene Desferrioxamine produziert. Eine robuste RP-HPLC-basierte Methode quantifizierte die Metallkomplexierung. Weitere Methoden zur Metallimmobilisierung von Metallophoren für die Metallextraktion aus Lösungen mit niedrigen Konzentrationen wurden etabliert. Darüber hinaus zeigen Catechol- und Hydroxamat-Metallophore aus Arthrobacter oxydans ATW2 und Kocuria rosea ATW4 die Verbesserung der Bioverfügbarkeit von Ge und Seltenen Erden, die Förderung des Pflanzenwachstums und das Phytoextraktionspotenzial.:CONTENTS Abstract ..........................................................................................................1 CHAPTER 1 Introduction ......................................................................................5 CHAPTER 2 Mobilization of trace elements in soil extracts by bacterial siderophores in dependence of the pH-value..................................31 CHAPTER 3 Cultivation dependent formation of siderophores by Gordonia rubripertincta CWB2........................................................................41 CHAPTER 4 Data on metal-chelating, -immobilization and biosorption properties by Gordonia rubripertincta CWB2 in dependency on rare earth adaptation.......................................................................................67 CHAPTER 5 Analysis of desferrioxamine-like siderophores and their capability to selectively bind metals and metalloids: development of a robust analytical RP-HPLC method. ..........................................................97 CHAPTER 6 Secondary metabolites released by the rhizosphere bacteria Arthrobacter oxydans and Kocuria rosea enhance plant availability and soil–plant transfer of germanium (Ge) and rare earth elements (REEs) .........................................................................................120 CHAPTER 7 Conclusion remarks and further perspectives ...............................154 References .......................................................................................................162 Acknowledgement .........................................................................................185 Curriculum Vitae ..........................................................................................187 List of publications ..........................................................................................189 List of oral and poster presentations ..........................................................190 List of proceedings ..........................................................................................191

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