Les exosomes apoptotiques (ApoExo) sont des vésicules extracellulaires (EVs) dérivées de lésions vasculaires et libérées par des cellules endothéliales (ECs) apoptotiques dont la taille, les protéines, le profil en ARN et l'activité enzymatique sont différents de ceux des corps apoptotiques classiques. Notre groupe a montré que les ApoExos accéléreraient le rejet vasculaire en association avec les anti-LG3 circulants, des auto-anticorps (auto-Ac) dirigés contre le LG3, le fragment 5' du perlécan. Nous avons également démontré le rôle de biomarqueur et le rôle effecteur des anti-LG3 dans les lésions vasculaires rénales, à la fois dans les reins natifs et transplantés. La néphrite lupique (NL) est une manifestation fréquente et grave du lupus érythémateux disséminé (LED). Il n'existe pas de biomarqueurs du dysfonctionnement rénal progressif dans la NL. Nous émettons l'hypothèse que les ApoExos stimulent des cellules B spécifiques qui existent dans le répertoire immunitaire normal et que les conditions pro-inflammatoires prévalant chez les patients atteints de LED, telles que l'activation accrue des récepteurs Toll-like (TLRs), amplifient cette réponse, conduisant à la production d'anti-LG3, un auto-Ac important dans l'établissement de la NL. Des cellules B productrices d’anti-LG3 ont été trouvées dans la cavité péritonéale de souris saines et ont produit des anti-LG3 suite à une stimulation in vitro avec des agonistes des TLR1/2, TLR4, TLR7 et TLR9. Il est intéressant de noter que ces cellules sont absentes de la cavité péritonéale de souris saines ayant reçu une injection d'ApoExos. En explorant l'importance fonctionnelle des TLRs dans le déclenchement d'une réponse auto-immune dans un modèle murin lupique, nous montrons que les agonistes de TLRs connus pour contribuer à la pathogenèse du LED (TLR2, 4, 7 et 9) déclenchent une production significativement plus élevée d'IgM anti-LG3, alors que la stimulation des TLRs qui ne sont pas associés à la pathogenèse du LED (TLR3 et 5) ne le fait pas. L’injection d'ApoExo a également déclenché l'axe auto-immun IL-23/IL-17 (mesuré par ELISA et essai cytokinique), augmenté les cellules B de centres germinatifs spléniques (mesuré par cytométrie de flux), augmenté les taux circulants d’IgG totaux, d’anti-LG3 et d’auto-Ac classiques du LED (mesuré par micropuce et ELISA) par rapport à l’injection de véhicule. Des niveaux élevés d'IgG anti-LG3 circulants sont observés chez les souris prédisposées au LED par rapport aux souris saines (mesurés par ELISA), ainsi qu'une proportion accrue de cellules B1 spléniques et de cavité péritonéale (mesurés par cytométrie de flux) augmentant avec l’établissement de la maladie. Ces observations suggèrent un rôle spécifique des ApoExos dans la modulation de la production d'auto-Ac qui, à son tour, déclenche l'involution microvasculaire importante dans les maladies auto-immunes et le rejet de greffe. Ces observations suggèrent également que les cellules B spécifiques de LG3 peuvent être modulées dans des conditions pro-inflammatoires telles que celles qui prévalent chez les patients atteints de LED, conduisant à la production d'auto-Ac. Une meilleure compréhension de l'impact de ces mécanismes permettra d'améliorer l'identification, la prédiction et la prise en charge de la NL. / Apoptotic exosomes (ApoExo) are vascular injury derived extracellular vesicles (EVs) released by apoptotic endothelial cells (ECs) with distinct size, protein, RNA profile and enzymatic activity from classical apoptotic bodies. Our group showed that ApoExo accelerated vascular rejection in association with circulating anti-LG3, autoantibodies (autoAb) against LG3, the 5’ fragment of the perlecan. We have also unravelled biomarkers and effector roles of anti-LG3 in kidney vascular damage in both native and transplanted kidneys. Lupus Nephritis (LN) is a common and serious manifestation of systemic lupus erythematosus (SLE). Biomarkers of progressive renal dysfunction in LN, are lacking. We hypothesize that ApoExo stimulate specific B cells that exist in the normal immune repertoire and that the pro-inflammatory conditions prevalent in SLE patients, such as increased Toll-like Receptors (TLRs) activation, amplify this response, leading to anti-LG3 production, autoAb of importance in LN development. B cells producing anti-LG3 were found in the peritoneal cavity of healthy mice and produced anti-LG3 AutoAb when stimulated in vitro with TLR 1/2, 4, 7 and 9 agonists. Interestingly, these cells disappeared from the peritoneal cavity of healthy mice infused with ApoExo. ApoExo infusion also triggered circulating IL-23/IL-17 autoimmune axis (measured by cytokines assay), increased splenic germinal centre B cells (measured by flow cytometry), increased total circulating IgG, anti-LG3 and classical autoAb (measured by microarray and ELISA) compared to vehicle infusion. Elevated circulating anti-LG3 IgG levels are found in SLE prone mice compared to healthy ones (measured by ELISA) as well as an increased proportion of splenic and peritoneal cavity B1 cells (measured by flow cytometry). Exploring the functional importance of TLRs in triggering such a response, we show that while TLR agonists known to contribute to SLE pathogenesis (TLR2, 4, 7 and 9) triggered significantly higher IgM anti-LG3 production, stimulation of TLR that are not associated with SLE pathogenesis (TLR3 and 5) did not. These observations suggest a specific role for ApoExo in modulating the production of autoAb which, in turn, trigger microvascular involution of importance in autoimmune diseases and transplant rejection. These observations also suggest that LG3-specific B cells may be modulated under pro-inflammatory conditions such as those prevalent in lupus patients, leading to production of autoAb. A better understanding of the impact of these mechanisms will lead to improved identification, prediction, and management of LN.

En Europe, la présence de grands carnivores dans des paysages anthropisés entraîne une forte compétition avec l'homme et alimente d'importantes polémiques concernant leur protection légale. La perception antagoniste de ces espèces à la fois emblématiques pour certains et sources de conflits pour d'autres, rend la gestion de leurs populations très délicate. Depuis la recolonisation spontanée du loup (Canis lupus) dans les Alpes françaises au début des années 1990, la population s'est accrue numériquement et spatialement. Parallèlement, les dégâts occasionnés par le loup sur la filière élevage ont suivi la même tendance. L'Etat met en place aujourd'hui un contrôle raisonné de la population, sous réserve que les objectifs de conservation, exigés par la Directive Habitat, soient respectés. En s'inspirant du cas d'étude du loup en France, nous proposons dans cette thèse un cadre de prise de décision structurée adapté pour la gestion et la conservation d'espèces rares et difficilement observables, protégées par des accords législatifs mais qui, dans un contexte social conflictuel, peuvent être régulées. La modélisation séquentielle du processus décisionnel s'est déroulée dans un contexte de forte incertitude selon plusieurs étapes : 1) appréhender les objectifs de conservation et/ou contrôle du loup en France pour les formaliser sous forme mathématique via une fonction d'utilité, 2) suivre la population par une méthode non-invasive pour définir des indicateurs de gestion fiables et évaluer le statut de conservation de la population, 3) coupler les mesures létales adoptées actuellement à un modèle démographique décrivant la dynamique du loup et intégrant sa structure sociale, 4) et déterminer la décision. Cette dernière étape est réalisée à l'aide d'une méthode d'optimisation qui calcule la stratégie optimale de gestion en fonction de la structure sociale de la population et des différentes sources d'incertitude accumulées à chaque étape du processus décisionnel. Nous avons choisi comme indicateur de gestion le taux de croissance, à partir duquel nous avons défini l'utilité. Cet indicateur était robuste à l'incertitude d'échantillonnage émergeant de la détection partielle et hétérogène des individus. Des analyses de sensibilité de la décision ont montré une forte influence de la fonction d'utilité sur la stratégie optimale, soulignant ainsi l'importance de définir correctement les objectifs. Nous avons également montré que la stratégie optimale était sensible aux variations des paramètres démographiques, montrant ainsi l'intérêt des méthodes de capture-marquage-recapture pour les estimer correctement. Nous discutons enfin de l'extension de notre approche à un cadre décisionnel de gestion adaptative pour traiter des problèmes de conservation dans un contexte conflictuel. / Large carnivore management in Europe is controversial because of conflictive objectives arising from the legal protection of threatened species vs. the possible necessity of culling individuals to prevent severe damages on human activities. Since the wolf recovery in the French Alps in the early 90's, the population has been numerically and spatially increasing. In parallel, livestock depredations have been following the same trend. As an EU member state, France is bound to the European Habitat Directive, which provides full protection of wolf populations and their habitat. Nevertheless, derogatory killings are allowed for individuals causing problems on livestock and some lethal control is now incorporated into the national management plan, as long as the population growth and its distribution range are not being threatened. Illustrating with the case study of the wolf in France, my dissertation proposes a structured decision making framework for the management and the conservation of elusive species that are legally protected but, in a conflictive context, are subject to population control. The sequential modeling of our decision process occurred in the following steps: 1) define the multiple objectives and formulate them in terms of a utility function, 2) monitor the population through a non-invasive approach in order to define the population conservation status, 3) build a demographic model to predict the consequences of harvesting on population dynamics and social structure, 4) obtain optimal state-dependent decisions. The last step is done with stochastic dynamic programming (SDP), acknowledged to be one of the most useful optimization methods in decision making. We provide an optimal solution for wolf management that gives the highest chance of meeting objectives, defined on population growth rate. This demographic indicator was found to be robust to sampling uncertainty arising from partial and heterogeneous detection of individuals. We ran decision sensibility analyses and found a strong effect of the utility function on the optimal strategy, highlighting the importance of defining explicit objectives. We also found that the optimal strategy was sensitive to demographic parameters, which demonstrate the general need of using solid statistical approaches to estimate them properly. This structured decision making framework can further be extended to adaptive management, acknowledged as being a convenient framework for wildlife management.

L’acide mycophénolique (MPA) est un immunosuppresseur très prometteur dans le traitement des maladies auto-immunes (MAI) telles que le lupus érythémateux disséminé (LED) et les vascularites à ANCA, et disponible sous deux formes pharmaceutiques : le mycophénolate mofétil (MMF) et le mycophénolate sodique (EC-MPS). Les études menées chez les patients transplantés recommandent le dosage plasmatique et le suivi pharmacocinétique (PK) du MPA, dans un objectif d’optimisation thérapeutique. A ce jour, ce suivi est encore inexistant dans les MAI, et les données de corrélation concentrations-efficacité thérapeutique, sur lesquelles se base l’optimisation, demeurent toujours rares dans ce domaine. Les travaux présentés dans cette thèse s’inscrivent dans l’étude des corrélations PK/pharmacodynamie (PD) du MPA dans les MAI. Ces travaux ont permis de proposer des schémas et des outils d’optimisation des traitements à base de MPA pour ces patients. Pour cela, les concentrations plasmatiques du MPA et de son métabolite 7-O-glucuronide (MPAG) ont été déterminées pour 53 patients présentant de manifestations extra-rénales de MAI à l’aide d’une méthode de chromatographie couplée à la spectrométrie de masse. Les paramètres PK ont été estimés pour MMF et EC-MPS dans les deux groupes de MAI. D’après ces travaux, l’optimisation du MMF chez les patients atteints de MAI peut reposer sur le suivi de la concentration à 12 h (C12) en MPA. Un seuil de 3 mg/L est proposé afin de maintenir la rémission dans le LED, mais reste à définir dans les vascularites. Pour EC-MPS, une stratégie de prélèvements limités basée sur la mesure de la concentration maximale et la C12 est nécessaire pour estimer l’aire sous la courbe des concentrations entre 0 et 12 h du MPA. / Mycophenolic acid (MPA), the active form of both mycophenolate mofetil (MMF) and enteric-coated mycophenolate sodium (EC-MPS), is an immunosuppressant increasingly used in the treatment of autoimmune diseases such as systemic lupus erythematosus (SLE) and ANCA-associated vasculitis. In transplant recipients, therapeutic drug monitoring (TDM) of MPA is widely used to prevent acute organ rejection. However, MPA TDM is currently not available in autoimmune diseases, as data on the pharmacokinetic (PK)/pharmacodynamic (PD) relationships are very sparse in this indication. Our aim was to study the possible PK/PD relationships of MPA in patients with non-renal manifestations of SLE or ANCA-associated vasculitis. An assay based on liquid chromatography coupled with mass spectrometry was applied to the PK study of MPA and its major glucuronide metabolite (MPAG) in 53 SLE and vasculitis patients receiving either MMF or EC-MPS. According to our results, in SLE patients with non-renal manifestations, TDM based on the measurement of MPA 12-h trough concentration (C12) would allow optimizing therapies with MMF. A 3-mg/L efficacy threshold could be proposed to prevent clinical flares under MMF maintenance therapy. For EC-MPS, a limited sampling strategy including MPA maximum concentration and C12 is necessary to estimate the area under the curve between 0 and 12-h of MPA.

O anticorpo anti-proteína P ribossomal é um marcador sorológico do lúpus eritematoso sistêmico. Nós avaliamos a relevância do mesmo em discriminar os padrões histopatológicos de nefrite lúpica. O anti-P foi detectado em 18/81(22%) dos pacientes com envolvimento renal confirmado por biópsia. Foi observada uma freqüência aumentada deste anticorpo em pacientes com classe V (72%) comparado com outras classes de nefrite (28%), p=0.005. Dentro do esperado, pacientes anti-P positivos tiveram um nível médio de proteinúria mais elevado que pacientes anti-P negativos (6,4 + 4,8 vs. 4,7 + 3,9 g/dl, p= 0,046). É ainda interessante que a maioria dos pacientes com anti-P isolado tinha classe V, e 71%apresentaram o padrão membranoso puro. O anti-P parece ser um novo marcador sorológico para a nefrite lúpica membranosa. / Anti-ribosomal P antibody is a serological marker for systemic lupus erythematosus. We have evaluated its relevance in discriminating histopathologic patterns of lupus nephritis. Anti-P was detected in 18/81 (22%) patients with biopsy proven renal involvement. A higher frequency of this antibody was observed in patients with class V (72%) compared to other classes of renal disease (28%), p=0.005. Accordingly, anti-P positive patients had higher mean proteinuria level than anti-P antibody negative patients (6.4 + 4.8 vs. 4.7 + 3.9 g/dl, p= 0.046). Interestingly, the majority of patients with isolated anti-P had class V, and 71% displayed a pure membranous pattern. Anti-P seems to be a novel serological marker for membranous lupus nephritis.

Invasões biológicas representam hoje a segunda maior ameaça à biodiversidade, e o homem desempenha papel fundamental na introdução de espécies exóticas potencialmente invasoras. O cachorro (Canis lupus familiaris) é uma dessas espécies. Presente em todos os continentes, é o carnívoro mais abundante do mundo, e pode causar impactos à fauna nativa através de efeitos letais e não letais da predação, competição, hibridização e transmissão de doenças, além de ser potencialmente importante na epidemiologia de zoonoses. Em áreas rurais, que concentram grande parte dos remanescentes de vegetação nativa no mundo, os cachorros são frequentemente criados soltos e circulam livremente, intensificando a chance de contato com a fauna nativa. Nesse trabalho, avaliamos a importância relativa de fatores associados a atributos individuais (sexo, idade, condição de saúde, comportamento exploratório, tamanho e raça), formas de manejo (incentivo do dono à movimentação, motivo para a criação, confinamento e frequência de alimentação) e contexto ambiental (proximidade à mata nativa) para determinar a chance de cachorros visitarem remanescentes florestais em paisagens fragmentadas de Mata Atlântica. Selecionamos oito paisagens de 2830 ha cada, nas quais visitamos todas as construções em áreas rurais a fim de entrevistar, através da aplicação de questionário, os responsáveis pela criação de cachorros e fotografar os cachorros. Utilizamos a imputação múltipla para estimar os dados faltantes (comuns em dados obtidos via questionários), gerando 10 conjuntos de dados imputados que foram analisados separadamente. Por meio de seleções de modelos através do Critério de Informação de Akaike, comparamos modelos candidatos com até cinco variáveis independentes para determinar a chance de cachorros visitarem remanescentes florestais. Nossos resultados nos permitem afirmar que quatro fatores - dois associados a atributos individuais e dois associados a formas de manejo - atuam em conjunto para determinar a chance de cachorros visitarem remanescentes florestais em paisagens rurais da Mata Atlântica. Cachorros maiores, mais exploradores, que recebem mais incentivo a se movimentar e que passam menos tempo confinados têm maior chance de visitar remanescentes florestais. A maior importância de atributos individuais e da forma de manejo está de acordo com a grande variação fenotípica existente entre cachorros e a variedade de modos como são manejados. Entre os atributos individuais, tanto características físicas como comportamentais são importantes, enquanto os aspectos chave da forma de manejo são aqueles mais diretamente relacionados à movimentação dos cachorros. Independentemente do tempo de confinamento, o incentivo do dono à movimentação do cachorro, em particular o estímulo para que o cachorro o acompanhe em visitas a remanescentes florestais, é fundamental. O contexto ambiental, em especial a proximidade do domicílio a áreas de mata nativa, por sua vez, é irrelevante dada a alta mobilidade dos cachorros. Nossos dados sugerem que a densidade de cachorros em paisagens rurais de Mata Atlântica é uma ordem de magnitude mais alta do que a de carnívoros de médio porte silvestres relativamente comuns, que muitos cachorros já tiveram contato direto com espécies silvestres, e que a vacinação e outras medidas profiláticas são relativamente incomuns. Todos esses dados indicam o potencial de efeitos negativos, tanto para a fauna silvestre como para o homem. Programas de redução destes impactos devem incluir tanto aspectos veterinários, como a expansão de campanhas públicas de profilaxia para além da vacinação antirrábica, quanto aspectos sociais, como a divulgação e conscientização dos potenciais problemas ocasionados pela entrada de cachorros em áreas de vegetação nativa, visando mudanças nas crenças, atitudes e comportamento da população humana / Biological invasions are today the second greatest threat to biodiversity, and humans play a significant role in the introduction of potentially invasive exotic species. The dog (Canis lupus familiaris) is one of such species. Distributed across all continents, the dog is the most abundant carnivore in the planet, and can impact wildlife through lethal and non-lethal effects of predation, competition, hybridization and disease transmission, besides being potentially important in the epidemiology of zoonoses. In rural areas where most remnants of native vegetation around the world are concentrated, most dogs are free-ranging, enhancing the chance of interactions with wildlife. Here, we evaluated the relative importance of factors associated with individual traits (sex, age, health condition, exploratory behaviour, size and breed), management (owner\'s incentive to movement, motive for raising, confinement and feeding frequency), and environmental context (proximity to native forest) to determine the chance of dogs visiting forest remnants in Atlantic Forest fragmented landscapes. We selected eight landscapes of 2830 ha each, where we visited all constructions in rural areas in order to interview dog owners by applying a questionnaire and to photograph dogs. We used multiple imputation to estimate missing data (common in data obtained through questionnaires), obtaining 10 imputed datasets that were analyzed separately. We compared candidate models with up to five independent variables to determine the chance of dogs visiting forest remnants through the Akaike Information Criterion. Our results indicate that four factors - two associated with individual traits and two associated with management - work together to determine the chance of dogs visiting forest remnants in Atlantic Forest rural landscapes. Larger dogs, and those that exhibit exploratory behaviour, are more stimulated to move or confined for shorter periods have greater chance of visiting forest remnants. The greater importance of factors associated with individual traits and management is in accordance with the ample phenotypic variation among dogs and the variety of ways they can be managed. Among individual traits, both morphological and behaviour characteristics are important, whereas the key aspects of management are those directly related to dog movement. Irrespective of the time confined, the owner\'s incentive to movement, in particular taking the dog to the forest, is a crucial aspect. In contrast, the environmental context, especially the proximity of the household to native forest, is irrelevant given the vagility of dogs. Our results suggest that the density of dogs across rural landscapes in the Atlantic forest is at least one order of magnitude higher than the density of relatively common medium-sized native carnivores, that several dogs have already had direct contact with wild species, and that vaccination and other prophylactic measures are relatively uncommon. All of these highlight the potential for negative effects on both wildlife and human population. Plans to reduce these effects should include not only veterinarian aspects, such as the expansion of public prophylactic campaigns beyond rabies vaccination, but also social aspects, such as the dissemination of information on the problems caused by dogs visiting native vegetation, aiming at changing people\'s beliefs, attitudes and behaviour

Invasões biológicas representam atualmente a segunda maior ameaça à biodiversidade e dois fatores são considerados os mais importantes para o sucesso de invasões: pressão de propágulos e distúrbios. Um tipo de distúrbio antrópico que pode promover invasões, por mudar a quantidade de habitats alterados e a extensão de bordas entre eles e habitats nativos, é a perda de habitat. Apesar da reconhecida importância da pressão de propágulos e dos distúrbios, poucos estudos os investigaram simultaneamente e, os que o fizeram, apresentam limitações, como escalas espaciais pequenas e correlações entre os determinantes, dificultando a compreensão da importância relativa e interações entre eles. Cachorros são os carnívoros mais abundantes no mundo. Em áreas rurais, a maioria mantém comportamento de animal de vida de livre, interagindo com e afetando espécies nativas através de predação, transmissão de doenças e competição. Usando um banco de dados obtido através de armadilhas fotográficas e censo da população de cachorros em uma região de Mata Atlântica de 300,000 ha, avaliamos a importância relativa e interações entre pressão de propágulos e distúrbios para a invasão por cachorros. Selecionamos 12 paisagens de 2830 ha cada, variando de 10 a 50% de floresta nativa remanescente. Em cada uma, alocamos através de amostragem aleatória estratificada 8 pontos de amostragem em florestas nativas, onde uma armadilha fotográfica foi instalada por ∼42 dias consecutivos. Todos os domicílios em cada paisagem foram visitados para a contagem do número de cachorros. A pressão de propágulos foi quantificada como a densidade de cachorros criados e a média e mediana das distâncias entre os locais de criação e a floresta nativa mais próxima; e distúrbios, como a proporção da paisagem ocupada por floresta nativa e total (nativa e exótica) e a extensão de bordas entre florestas nativas e áreas abertas. Através da identificação de cachorros nas fotos e considerando cada paisagem como uma unidade amostral, nós comparamos por AICc modelos de abundância (N-mixture) para estimar a abundância de cachorros em florestas nativas, considerando a detecção imperfeita. O único modelo selecionado indica que a abundância de cachorros em florestas nativas é maior onde a densidade de cachorros é mais alta e a cobertura florestal total é menor (ωi=0.82). A densidade de cachorros criados foi mais importante que a distribuição espacial dos indivíduos, e a cobertura floresta total mais importante que a extensão de bordas, para a abundância de cachorros invasores. A abundância estimada de cachorros variou de 12 a 79 (30.9 ± 19.5), e a proporção de cachorros criados que invadem florestas de 6 a 21% (12 ± 6%), entre as paisagens. Nossos resultados indicam que a perda de habitat é tão importante quanto a pressão de propágulos para a invasão de florestas nativas por cachorros, mas seus efeitos são aditivos em vez de sinérgicos. Dado que cachorros frequentemente realizam movimentos longos em áreas abertas, nós levantamos a hipótese de que a capacidade de deslocamento é a causa do efeito desprezível da distribuição espacial dos indivíduos criados sobre a invasão, e que florestas representam barreiras a estes movimentos, tornando o efeito da cobertura florestal mais importante do que o efeito da extensão de bordas (mais relacionada a extensão de acesso a floresta). Além disso, o número e proporção de cachorros invasores são expressivos, colocando o cachorro na posição de carnívoro mais abundante em remanescentes florestais. Junto com os conhecidos impactos severos de cachorros sobre espécies nativas, estes números sugerem a urgência de planos de ação para controlar a invasão por cachorros. Além dos métodos tradicionais de controle populacional, o contexto da paisagem deve ser levado em conta nestes planos. Paisagens muito desmatadas devem ser priorizadas, e manter e restaurar florestas também devem ser valorizados pelos efeitos negativos sobre invasões biológicas. Por fim, dada a associação da invasão por cachorros com a perda de habitat e com a densidade de cachorros e da população humana, sugerimos que pelo menos parte dos efeitos negativos sobre mamíferos nativos usualmente atribuídos ao desmatamento e a caça podem ser causados pela invasão por cachorros / Biological invasions are currently the second main threat to biodiversity and two drivers are considered as the most important for invasions success: propagule pressure and disturbance. An anthropogenic disturbance that can promote invasions, by changing the amount of altered habitats and the extension of edges between altered and native habitats, is habitat loss. Despite the recognized importance of propagule pressure and disturbance, few studies have simultaneously investigated these factors, and those that did so present limitations, such as small spatial scales and correlations between drivers, impairing our understanding of the relative importance and interactions between these drivers. Dogs are the most abundant carnivores worldwide; in rural areas, most are free ranging, interacting and affecting native species through predation, disease transmission and competition. Using a camera trap dataset and censuses of dog populations obtained across a 300,000-ha Atlantic forest region, we evaluated the relative importance and interactions of propagule pressure and disturbance as drivers of dog invasion. We selected 12 2830-ha landscapes, ranging from 10 to 50% remaining native forest. Within each, we selected through a random-stratified sample 8 forest sites where a camera trap was set for ∼42 consecutive days. All households in each landscape were visited to count the number of dogs. Propagule pressure was quantified as the density of raised dogs, and mean and median distances between locations where dogs were raised and the nearest forest; and disturbance as the proportion of the landscape occupied by native forest and by total forest (native and exotic), and edge extension between native forest and open areas. By identifying individual dogs in the photos and considering each landscape as a sampling unit, we compared through AICc N-mixture models to estimate the abundance of dogs within forests, considering imperfect detection. The only selected model indicates that dog abundance in forests is higher where the density of raised dogs is higher and where total forest cover is lower (ωi=0.82). Density of raised dogs was more important than the spatial distribution of individuals, and total forest cover more important than edge extension, in determining the abundance of invading dogs. The estimated dog abundance varied from 12 to 79 (30.9 ± 19.5), and the proportion of raised dogs that invade forests from 6 to 21% (12 ± 6%), across landscapes. Our results indicate that habitat loss is as important as propagule pressure in driving the invasion of native forests by dogs, but their effects are additive rather than synergic. Given that dogs frequently make long movements in open areas, we hypothesize that dog vagility is the cause of the negligible effect of spatial distribution of raised individuals on invasion, and that forests represent barriers to these movements, making the effect of forest cover more important than the effect of edge extension (more related to the extension of access to forests). Moreover, the number and proportion of invading dogs are impressive, ranking dogs as the most abundant carnivore in forest remnants. Together with the known severe impacts of dogs on native species, these numbers suggest the urgency of action plans for controlling dog invasion. Beyond the traditional population control, landscape context should be taken into account within strategies to reduce impacts of dogs. Highly-deforested landscapes should be prioritized, and maintaining and restoring forests should be valued also by their negative effects on biological invasions. Finally, given the observed associations between dog invasion and both habitat loss and density of dogs and human populations, we suggest that at least part of the negative effects on native mammals currently attributed to deforestation and hunting can be caused by dog invasion

INTRODUÇÃO: O comprometimento ósseo em pacientes portadoras de nefrite lúpica é comum e multifatorial. O objetivo deste trabalho foi estudar a contribuição do componente inflamatório para o comprometimento ósseo destas pacientes. MÉTODOS: Foram estudadas 15 pacientes do sexo feminino (no menacme) com diagnóstico recente (<= 2 meses) de Lupus Eritematoso Sistêmico e Nefrite Lúpica (NL). Foram excluídos pacientes com história/evidência de doença renal ou óssea prévia. A avaliação laboratorial incluiu a dosagem de 25-hidroxivitamina D3 ([25(OH)D] e de citocinas inflamatórias associadas a fisiopatologia do lupus [Interleucina-6, Fator de necrose tumoral ? e Monocyte Chemoattractant Protein-1 (MCP-1)]. Além disso, as pacientes foram submetidas a biópsia óssea, com análise histomorfométrica, imunohistoquímica e cultura celular (estudo da proliferação e citometria de fluxo). RESULTADOS: As pacientes lúpicas apresentavam em média 29,5±10 anos, com uma proteinúria de 4,7±2,9 g/dia, e uma taxa de filtração glomerular estimada de 37(31-87) ml/min/1,73m², e estavam em uso de glicocorticóide por 34±12 dias. Todas as pacientes apresentavam níveis insuficientes de vitamina D (9,9±4,4ng/ml, variando de 4 a 20 ng/ml). Os níveis de 25(OH)D se correlacionaram negativamente com os de todas as citocinas inflamatórias estudadas. Os níveis de MCP-1 urinário se correlacionaram negativamente com os de 25(OH)D (r= -0,53, p=0,003) e positivamente com os de deoxipiridinolina (r=0,53, p=0,004). Não observamos diferença significativa entre pacientes e controles na proliferação de osteoblastos medida pela incorporação pela timidina (82,22±8,43 vs 56,06±23,73 contagem por minuto, p=0,21). Os osteoblastos provenientes dos fragmentos ósseos das pacientes lúpicas apresentaram uma maior expressão de MCP-1, medida pela intensidade média de fluorescência (32,0±9,1 vs 22,9±5,3, p=0,01). Quando comparadas a controles, as pacientes portadoras de nefrite lúpica apresentaram valores significativamente inferiores de dois parâmetros de formação óssea (volume e espessura osteoide). Além disso, detectamos também uma redução em dois parâmetros de mineralização óssea (superfície mineralizante e taxa de formação óssea). Por fim, as pacientes lúpicas apresentaram um aumento significativo da reabsorção óssea e da superfície osteoclástica. Com relação a imunohistoquímica, as pacientes lúpicas apresentaram uma menor expressão de osteoprotegerina (0,61±0,82 vs 1,08±0,50, p=0,003) e uma maior expressão do receptor ativador do fator nuclear-?B ligante (RANKL) (1,76±0,92 vs 0,41±0,28, p<0,001) quando comparadas aos controles. CONCLUSÕES: Pacientes com diagnóstico recente de nefrite lúpica, submetidas a um reduzido tempo de exposição e carga cumulativa de corticóide, apresentam um significativo comprometimento ósseo, caracterizado por uma redução da formação e mineralização óssea, associada a um aumento da reabsorção óssea. Os níveis de MCP-1 urinário se correlacionaram negativamente com os de 25-hidroxivitamina D3 e positivamente com os de deoxipiridinolina, sugerindo que fatores inflamatórios possam contribuir para a insuficiência de vitamina D e a reabsorção óssea. A expressão óssea aumentada de RANKL e reduzida de OPG, assim como o aumento da expressão de MCP-1 pelas células ósseas das pacientes lúpicas, reiteram a hipótese de que a inflamação per se possa influenciar a reabsorção óssea observada nestas pacientes / INTRODUCTION: Bone disease in lupus nephritis patients is common and multifactorial. The aim of this study was evaluate the contribution of inflammatory factors to the bone disorder observed in these patients. METHODS: We studied 15 female pre-menopausal patients with <= 2 months of diagnosed Systemic Erythematosus Lupus and Lupus Nephritis (LN). Subjects with prior kidney or bone disease were excluded. We measured the levels of 25-hydroxyvitamin D3 [25(OH)D] and cytokines involved in LN physiopathology [Interleucin-6, Tumor Necrosis Factor ?, and Monocyte Chemoattractant Protein-1 (MCP-1)]. Patients were submitted to bone biopsy, followed by osteoblast culture (cell proliferation and flow cytometry), histomorphometric and immunohistochemistry analysis. RESULTS: LN patients presented a mean age of 29.5±10 years, a proteinuria of 4.7±2.9 g/day and an estimated glomerular filtration rate of 37(31-87) ml/min/1,73m². They were on glucocorticoid therapy for 34±12 days. All patients presented vitamin D insufficiency (9.9±4.4 ng/ml, range 4-20). Vitamin D levels were negatively correlated with all inflammatory cytokines. Urinary MCP-1 correlated negatively with 25-hydroxyvitamin D3 (r= -0.53, p=0.003) and positively with serum deoxypyridinoline (r=0.53, p=0.004). There were no differences between NL patients and controls in osteoblast proliferation measured by incorporation of thymidine (82.22±48.43 vs 56.07±23.73 counts per minute, respectively, p=0.21). Osteoblasts isolated from LN patients presented a significantly higher expression of MCP-1, as measured by mean fluorescence intensities (32.0±9.1 vs 22.9±5.3, p=0.01). LN patients presented a significantly reduction in two formation parameters (osteoid volume and osteoid thickness). They also presented a decrease in mineralization surface and bone formation rate, associated with an increased eroded surface and osteoclast surface. Patient\'s bone specimens demonstrated a reduced immunostaining for osteoprotegerin (0.61±0.82 vs 1.08±0.50%, p=0.003), and an increased expression of Receptor Activator of NF-kB ligand (RANKL) (1.76±0.92 vs 0.41±0.28%, p < 0.001) when compared to controls. CONCLUSION: Newly diagnosed lupus nephritis patients, submitted to a limited time of exposure and to a low cumulative dose of glucocorticoids, presented a significant disturbance in bone metabolism, characterized by an impaired bone formation and mineralization, associated with an increase in resorption parameters. The levels of urinary MCP-1 were negatively correlated to 25-hydroxyvitamin D3 and positively correlated to serum deoxypyridinoline, suggesting that inflammation may contribute to vitamin D insufficiency and bone resorption. Bone tissue overexpression of RANKL and underexpression of osteoprotegerin, as well as increased expression of MCP-1 by cultured bone explants cells reinforces inflammatory background contributing to bone resorption in LN bone disease

Le lupus érythémateux systémique est une maladie autoimmune systémique caractérisée par des lésions multiviscérales et la production d’autoanticorps (ex : anticorps anti-ADN double brin (db)) par les lymphocytes B (LB), qui jouent un rôle central dans la physiopathologie lupique. L’étiologie du lupus est à la fois environnementale et génétique. Dans le but d’identifier des anomalies génétiques intrinsèques aux LB, le laboratoire a réalisé une analyse transcriptomique sur les LB de patients lupiques en phase quiescente et a montré une surexpression des gènes TRIB1 et FKBP11 comparé aux sujets sains.Afin d’étudier les conséquences de la surexpression de ces gènes sur la fonction des LB et le développement d’une autoimmunité, nous avons généré une lignée murine conditionnelle spécifique, surexprimant Trib1 dans les LB à partir du stade précoce pro-préB et une lignée murine transgénique surexprimant Fkbp11 de façon ubiquitaire. La surexpression de Trib1 ne modifie pas l’homéostasie lymphocytaire mais induit une diminution de la production de certaines Ig : 1) les IgG1 dans le sérum à l’état basal et après une stimulation de LB in vitro ; 2) les IgM anti-OVA (Ovalbumine) après immunisation in vivo avec de l’OVA ; 3) les IgM anti-ADNdb dans le cas d’une immunisation par le LPS. Cette anomalie de la production des Ig semble provenir d’un défaut de sécrétion. De plus nous avons généré une lignée cellulaire B surexprimant Trib1 qui nous a permis de confirmer le phénotype et d’identifier des partenaires potentiels de Trib1 par technique de protéomique. La surexpression du gène Fkbp11, est, quant à elle, suffisante à induire des signes de la maladie lupique chez la souris âgée de 8 mois, tels qu’une rupture de tolérance (caractérisée par la production d’autoanticorps) et une initiation de la différenciation plasmocytaire. En conclusion, Trib1 pourrait exercer un rôle d’immunosupresseur et sa surexpression dans les LB lupiques pourrait constituer un nouveau mécanisme de régulation des LB pendant la phase de rémission du lupus, alors que Fkbp11 semble contribuer à la pathologie lupique. La description de ces deux nouvelles voies biologiques pourrait mener à une meilleure compréhension de la maladie et conduire à de potentielles applications thérapeutiques. / Systemic Lupus Erythematosous (SLE) is an autoimmune disease characterized by an inflammation of various tissues and a high production of autoantibodies (autoAb) (for example: anti-double-stranded(ds)DNA) by B cells, central actors in the physiopathology of lupus. The etiology of SLE includes both genetics and environmental factors. Looking for B cell genetic abnormalities during lupus, our B cell microarray analysis in quiescent SLE patients pointed to the overexpression of TRIB1 and FKBP11 compared to B cells from healthy controls.In order to study the consequences of these expression deregulations on B cell function and autoimmunity development, we generated a B-cell specific Trib1-KI mouse line, overexpressing Trib1 in B cells, starting from a very immature stage (pro-pre B) and a transgenic mouse overexpressing Fkbp11 ubiquitously. Trib1 overexpression induces a normal B cell homeostasis but a decrease in the production of some immunoglobulins (Ig): 1) IgG1 subclass in the serum, at a basal level and after an in vitro stimulation of splenic B cells; 2) Anti-OVA (Ovalbumine) IgM after immunization in vivo with OVA; 3) Anti-dsDNA IgM after immunization with LPS. This abnormal production of Ig seems to be linked to a defect in Ig secretion process. In addition, we developed a murine B cell line overexpressing Trib1 that let us to confirm the Ig production deficiency and to identify potential Trib1’s partners in B cells. In contrast, Fkbp11 overexpression, leads to some features of lupus disease in 8-month-aged-mice, including a tolerance breakdown (characterized by autoantibody production) and the initiation of plasma cell differentiation. In conclusion, Trib1 could exert an immunosuppressive role and its overexpression in SLE could constitute a new mechanism of B cell regulation during remission phases, whereas Fkbp11 seems rather to contribute to lupus physiopathology. Thus, the description of these two biological pathways could bring new insights into the comprehension of lupus disease and could also potentially lead to the development of new therapeutic applications.

L’objectif de ma thèse a été d’étudier l’expression et l’activité de deux récepteurs de chimiokine dans deux désordres immunitaires, CCR1 dans le modèle murin NZB/W de néphrite lupique et CXCR4 dans la Lymphopénie T CD4+ Idiopathique (LCI), un déficit immunitaire rare chez l’Homme. Le Lupus Erythémateux Disséminé est une maladie autoimmune, chronique et inflammatoire dont le développement est caractérisé par une perte progressive de la fonction rénale associé notamment à une infiltration leucocytaire. Je me suis intéressé à la contribution de CCR1 et de ses ligands CCL3/CCL5 au recrutement leucocytaire intra-rénal chez la souris NZB/W néphritique. Nos résultats révèlent une augmentation de l’expression et de la fonction de CCR1 à la surface des cellules T (LT), des phagocytes et des neutrophiles issues de souris néphritiques. Un traitement aigu par un antagoniste non-peptidique de CCR1 administré par voie orale a réduit l’infiltration rénale des LT et des macrophages. L’inhibition de CCR1 à long terme a permis de diminuer l’accumulation rénale des LT CD4+ effecteurs/mémoires, des monocytes inflammatoires Ly6C+ et des macrophages polarisés M1 ou M2, a amélioré les atteintes tubulo-interstitielles et glomérulaires, a retardé l’apparition d’une protéinurie fatale et in fine a prolongé la survie des souris NZB/W. Ainsi, la combinaison d’approches pharmacologiques et fonctionnelles nous a permis de dévoiler un rôle pathogénique de CCR1, dans la progression de la néphrite lupique chez la souris NZB/W. La LCI est un déficit immuno-hématologique hétérogène et d’étiologie inconnue associant un nombre faible et persistant de LT CD4+ circulants et des infections opportunistes sévères en particulier d’origine fongique. Nos analyses multi-paramétriques par cytométrie en flux ont permis de révéler une perte d’expression et de fonction de CXCR4 à la membrane des LT de 17 des 20 patients étudiés. Ces données suggèrent que l’anomalie de CXCR4 constitue un trait biologique commun de la LCI. Notre approche transcriptomique a également permis d’identifier des signatures spécifiques de l’expression de gènes associés au seuil d’activation du TCR et à l’immuno-sénescence dans la LCI. Nos analyses phénotypiques et fonctionnelles ont confirmé ces observations et rapportent pour la première fois que les LT circulants résiduels de patients présentent un profil sénescent (exemple : perte d’expression des molécules de co-stimulation CD27 et CD28), des anomalies de réponse du TCR in vitro et une érosion des télomères. Sur un plan mécanistique, nous avons montré que les anomalies de signalisation intrinsèque aux LT des patients sont causées par l’expression accrue de la DUal-Specific Phosphatase 4 (DUSP4). Par conséquent, nos travaux révèlent une sénescence précoce des LT de patients souffrant de LCI, qui pourrait résulter d’une hyperstimulation chronique. Ce phénomène semble dépendre de la surexpression de DUSP4, dont la modulation pourrait constituer une piste thérapeutique dans la LCI afin d’améliorer les stratégies vaccinales. / My PhD works focused on the expression and function of chemokine receptors in two immune disorders, namely CCR1 in the lupus-prone NZB/W mouse model and CXCR4 in the Idiopathic CD4+ T-cell lymphopenia, a rare human immune defect.Systemic lupus erythematosus is a chronic inflammatory autoimmune disease, the development of which is characterized by a progressive loss of renal function. Such dysfunction is associated with renal leukocyte infiltration. During my PhD, I investigated the role of the CCR1 chemokine receptor in this process during the progression of nephritis in NZB/W mice. We found that peripheral T-cells, mononuclear phagocytes and neutrophils from nephritic NZB/W mice were more responsive to CCR1 ligands than the leukocytes from younger prenephritic mice. Short-term treatment of nephritic NZB/W mice with a orally available CCR1 antagonist decreased renal infiltration by T-cells and macrophages. Longer Ccr1 blockade decreased kidney accumulation of effector/memory CD4+ T-cells, Ly6C+ inflammatory monocytes, and both M1 and M2 macrophages; reduced tubulointerstitial and glomerular injuries; delayed fatal proteinuria; and prolonged animal lifespan. Altogether, these findings highlight a pivotal role for CCR1 in the recruitment of T and mononuclear phagocyte cells to inflamed kidneys of NZB/W mice, which in turn contribute to the progression of renal injury.ICL is heterogeneous immunological syndrome of unclear molecular mechanisms, characterized by a profound and persistent CD4+ T-cell defect and by opportunistic infections in particular of fungal origin. We detected using multiparametric flow-cytometry analyses, reduced levels of CXCR4 expression and chemotactic function on T-cells from 17 of 20 ICL patients. These results suggest that the impaired membrane expression and function of CXCR4 is a common biologic trait of ICL. Using a transcriptomic approach, we also identified an ICL-specific T-cell gene expression signature characteristic of low TCR sensitivity and accelerated T-cell aging. Phenotypic and functional analyses of circulating T cells confirmed these observations and extended them to include an expansion of terminally-differentiated T cells with hallmarks of aging including loss of the co-stimulatory molecules CD27 and CD28, defective in vitro TCR responses, and telomere erosion. Mechanistically, we further showed that intrinsic T-cell signaling defects were caused by higher expression of DUal-Specific Phosphatase 4 (DUSP4). These findings suggest that premature T-cell senescence occurs in ICL as a result of chronic T-cell activation. This is in part due to abnormally high DUSP4 expression in CD4+ T cells, the modulation of which may constitute a novel therapeutic avenue in ICL to improve vaccination strategies.

Objetivo: Avaliar a citologia cérvico-vaginal em adolescentes com lúpus eritematoso sistêmico juvenil (LESJ) e comparar com controles. Material e métodos: Cinqüenta e duas adolescentes com LESJ (critérios do American College of Rheumatology) foram comparadas com 52 controles saudáveis. Todos os esfregaços de Papanicolaou foram avaliados por uma mesma citopatologista, que desconhecia o exame ginecológico, e foram classificados de acordo com o Sistema de Bethesda, 2001. Resultados: As médias das idades das pacientes com LESJ e controles foram similares (16,17 ± 1,94 versus 16,13 ± 2,16 anos, p=0,92). A citologia cérvico-vaginal foi similar em ambos os grupos, embora as relações sexuais no último mês tenham sido menos freqüentes nas pacientes com LESJ em relação aos controles (23% versus 59,6%, p=0,0003). Apenas uma paciente (2%) com LESJ e duas controles (4%) tinham displasia cervical (LIE-BG) e papilomavírus humano (HPV) (p=1,0). Citologia cérvico-vaginal inflamatória foi observada em 21 (60%) das pacientes com SLEDAI maior ou igual a 4 e em apenas 4 (23%) daqueles com SLEDAI < 4 (p=0,001). Assim como, uma maior freqüência de achados inflamatórios também foi observada em adolescentes virgens com LESJ (57% versus 8%, p=0,005). Vaginite por Candida spp foi observada em 7 pacientes com LESJ (14%) e em nenhuma dos controles (p=0,012), e foi associada com uso de drogas imunossupressoras (p=0,01) e dose alta de prednisona (p=0,002). Conclusão: Nossos achados indicam que o trato genital feminino é um órgão alvo no LESJ, pois inflamação cérvico-vaginal está associada com atividade da doença independentemente da atividade sexual. / Objective: To evaluate cervicovaginal cytology in adolescents with juvenile systemic lupus erythematosus (JSLE) and to compare them to controls. Material and methods: Fifty-two female adolescents with JSLE (American College of Rheumatology criteria) were compared to 52 age-matched healthy controls. All Pap smears were evaluated by the same cytopathologist blinded to gynecology examination, and performed according to the Bethesda Classification System 2001. Results: The mean age of JSLE patients and controls were similar (16.17 ± 1.94 vs. 16.13 ± 2.16 years, p=0.92). The cervicovaginal cytology was found to be similar in both groups, although sexual intercourses in the last month were less frequent in JSLE than controls (23% vs. 59.6%, p=0.0003). Only one patient (2%) with JSLE versus two controls (4%) had cervical dysplasia (LGSIL) and human papilomavirus (p=1.0). Inflammatory cervicovaginal cytology was observed in 21 (60%) of patients with SLEDAI ? 4 and only 4(23%) of those with SLEDAI<4 (p=0.001). Likewise, a higher frequency of inflammatory changes were also observed in virgin JSLE (57% vs. 8%, p=0.005). Candida spp vaginitis was observed in 7 JSLE (14%) versus none in controls (p=0.012) and was associated to immunosuppressive drugs (p=0.01) and high dose of prednisone (p=0.002). Conclusion: Our findings supports the notion that female genital tract is a target organ in SLE since cervical inflammation is associated to disease activity independently of sexual activity.