No description available.

No description available.

No description available.

No description available.

No description available.

With the benefits of an ever increasing advance of industrialization around the globe come formidable environmental CO2 . Three environmental problems that have relevance to the research described in this thesis are the 1) buildup of atmospheric CO2 gas through the burning of fossil fuels, 2) eutrophication of aquatic systems, and 3) the acidification of environments from acid mine drainage (AMD) resulting from coal-mining activities. In particular research is presented in this thesis that investigated the surface chemistry of CO2 and phosphate (PO43-) on a suite of environmentally relevant iron oxyhydroxide materials and the chemistry of phospholipid molecules on environmentally relevant iron sulfide surfaces to suppress AMD. To develop a microscopic understanding of the surface chemistry of the different systems, an array of experimental and computational techniques were used in the research. Techniques included X-ray photoelectron spectroscopy, atomic adsorption, X-ray diffraction, scanning transmission microscopy with electron dispersive X-ray spectroscopy (STEM/EDS), ion chromatography (IC), and attenuated total reflectance Fourier transform Infrared (ATR-FTIR). Results from the latter technique were interpreted with the aid of density function theory (DFT) calculations. Iron oxyhydroxides, which consisted of ferrihydrite (FeOOH), goethite α-FeOOH), ferrimagnetic ferrihydrite (FerriFh), and aluminum-doped iron oxyhydroxide (content from 0-100 mol%) were synthesized and studied before and after exposure to gaseous CO2 , CO32-, and PO43- species. FeOOH and mixed Al/Fe oxyhydroxide surfaces showed high affinities for the formation of carbonate and bicarbonate species upon exposure to gaseous CO2 . Within the Al/Fe oxyhydroxide circumstance, a low Al level of incorporation in the iron oxyhydroxide structure caused a slight increase in surface area and increase in the amount of oxyanion (e.g., CO32- or PO43-) adsorption up to an Al level of 30 mol%. Significant changes were observed in the binding geometry of the adsorbed complexes on the Al/Fe mineral compared to single phase α-FeOOH, AlOOH, and FeOOH surfaces. ATR-FTIR results combined with vibrational frequency (DFT) calculations suggested the formation of multiple phosphate surface complexes via a variety of configurations such as inner-sphere/outer-sphere bidentate, monodentate depending on the solution pH and the Al mol% substituted into the Fe-oxyhydroxide. Studies investigated the adsorption of CO2 on FerriFh and compared those results to CO2 on ferrihydrite. The CO2 pressures used in these particular studies ranged from 1 to 57.8 bars. It is found that citrate bound species, resulting from the synthesis conditions used to make FerriFh, blocked surface sites for the formation of carbonate and bicarbonate species on the magnetic FerriFh and ferrihydrite oxyhydroxide minerals upon CO2 (gas) exposure. A bicarbonate or bent-CO2 like species (~1220 cm-1) formed at lower CO2 pressures (≤ 3.5 bars) but was absent at the higher pressures. Additional studies investigated the adsorption of various phospholipid molecules on pyrite, and iron sulfide with FeS2 stoichiometry. These studies were focused on suppressing the oxidative decomposition of pyrite to sulfuric acid, the root cause of AMD. Batch and column studies were employed to investigate the ability of phospholipids to reduce AMD over an extended period of time (up to 3 years). In studies that used actual coal mining refuse, which contained significant amount of pyrite, it was shown that the rate of acid production from pyrite decomposition could be reduced by as much as 70% due to the presence of surface bound phospholipid. Assembly of the phospholipid into a bilayer motif on the sulfide surface was hypothesized to form a hydrophobic barrier that kept dissolved O2 and bacteria from facilitating the oxidation of FeS2. Column experiments showed that when water at pH 7 was flowed over the coal mining waste, the effluent had a pH close to 3. In contrast when water at pH 7 was flowed over the pyrite containing waste, which was pretreated with lipid, the effluent had a pH closer to 7, and the total amount of Fe (Fe2+/Fe3+) and SO42- in the effluent waters was also reduced relative to the untreated pyrite containing waste circumstance. These studies showed that the application of phospholipid to pyrite containing coal mining waste could potentially be an environmentally friendly remediation technique. / Chemistry

Die Phospholipid-Hydroperoxid Glutathion-Peroxidase (phGPx) ist ein monomeres Selenoprotein, welches innerhalb der Familie der Glutathion-Peroxidasen aufgrund seiner breiten Substratspezifität und der Fähigkeit Proteinthiole zu modifizieren eine Sonderstellung einnimmt. Vom Gen der phGPx werden nach heutigem Kenntnisstand drei verschiedene Protein-Isoformen gebildet. Die mitochondriale Isoform enthält am N-Terminus ein mitochondriales Insertionssignal und wird bevorzugt im Testis exprimiert. Von einem im Leserahmen stromabwärts liegenden Startkodon wird die kürzere, ubiquitär exprimierte zytosolische Isoform synthetisiert. Eine dritte phGPx-Isoform besitzt eine N-terminale nukleäre Lokalisationssequenz (kodiert von einem alternativen Exon 1) und wird vornehmlich in den Kernen post-meiotischer Zellen der Spermatogenese gefunden. Aufgabe dieser Arbeit war es, die molekularen Mechanismen zu untersuchen, die am Zustandekommen des vielfältigen Expressionsmusters der phGPx-Isoformen beteiligt sind. Im ersten Teil der Arbeit wurden transkriptionelle Regulationsmechanismen der phGPx-Expression untersucht. Im proximalen Promotorbereich (-100 bp – +228 bp) des phGPx-Gens wurden unter in vitro (Supershift-Assay) und in vivo (Chromatin-Immunopräzipitation) Bedingungen die Transkriptionsfaktoren Sp1 und NF-Y identifiziert, die an drei GC-reiche Motive beziehungsweise zwei inverse CCAAT-Boxen binden. Darüber hinaus konnten in kompetetiven Gelshift-Assays im proximalen Promotorbereich zwei Bindungssequenzen identifiziert werden, die von Faktoren der Smad-Familie gebunden werden. Funktionelle in vitro Promotorstudien mit mutierten Promotorkonstrukten zeigten, dass die Mutagenesen der Sp1- und NF-Y Bindestellen einen starken Einfluss auf die Reportergenaktivität hatten. Im zweiten Teil der Arbeit wurden durch Untersuchungen von Protein-RNA-Interaktionen post-transkriptionelle Mechanismen der Expressionsregulation studiert. Mit Hilfe des in vivo Ansatzes des Hefe Drei-Hybrid Systems wurde der Guanin-reiche Sequenz bindende Faktor 1 (GRSF1) identifiziert, der in der 5’-untranslatierte Region der mitochondrialen phGPx-mRNA bindet. In RNA Gelshift-Assays wurde die Spezifität dieser Interaktion bestätigt und näher charakterisiert. Schließlich wurden für GRSF1 und die phGPx Expressionsprofile in murinen Gewebe erstellt sowie die zeitabhängige Expression beider Proteine während der Embryogenese verfolgt. Die auffällig ähnlichen Expressionsmuster lassen ähnliche Regulationsmechanismen vermuten. Die in dieser Arbeit identifizierten trans-regulatorischen Proteine Sp1, NF-Y, Smad und GRSF1 sollten an der differentiellen Expression der phGPx-Isoformen beteiligt sein. / The Phospholipid Hydroperoxide Glutathione Peroxidase (phGPx) is a monomeric selenoprotein that is unique in the family of Glutathione Peroxidases due to its low substrate specificity and its ability to oxidise protein thiols. Three different isoforms are known to derive from one common gene. The mitochondrial Isoform contains an N-terminal mitochondrial insertion sequence and is preferentially expressed in postpubertal testis. The shorter, ubiquitously expressed, cytosolic isoform is expressed from an in-frame start codon. A third isoform contains an N-terminal nuclear localization signal coded for by an alternative exon 1 and is preferentially expressed in the nuclei of post-meiotic spermatides. The aim of the present study is to investigate the molecular mechanisms leading to the different isoforms and causing their tissue specific expression pattern. In the first part of this work transcriptional regulatory mechanisms will be analysed. Within the proximal promoter region (-100 to +228 bp) of the phGPx gene the transcription factors SP1 and NF-Y were identified to bind to three GC-boxes and two CCAAT-boxes respectively using in vitro methods (Supershift Assays) and in vivo methods (Chromatine immunoprecipitation). Moreover, performing competitive gel shift assays two binding elements for the smad family of transcription factors could be identified. Functional in vitro reporter gene assays provided evidence that the mutagenesis of the binding sequences for NF-Y and Sp1 has a strong impact on promoter activity. In the second part of this work post-transcriptional events in the expression regulation of the phGPx were analysed on the basis of protein/RNA interactions. Applying the in vivo approach of the yeast three hybrid system the Guanin-riche sequence binding factor 1 (GRSF1) could be identified binding to the 5’-untranslated region of the mitochondrial phGPx messenger. RNA mobility shift assays were performed to further characterize the specificity of this protein/RNA interaction. Eventually, the tissue distribution of GRSF1 and phGPx was studied in murine tissues and their expression kinetics were followed during murine embryogenesis. The obvious parallel expression kinetics for mitochondrial phGPx and GRSF1 suggest common regulatory mechanisms for these two genes. All the identified trans-regulatory elements are very likely to be involved in the differential expression regulation of the phGPx isoforms.

Geladene Phosphatgruppen sind von wesentlicher Bedeutung für die Hydratisierung von Phospholipiden und DNS. Hydratisierungshüllen spielen eine wichtige Rolle für die Ausbildung und Stabilisierung von Zellmembranen und der DNS-Doppelhelixstruktur. In dieser Arbeit werden elementare Phosphat-Wasser-Wechselwirkungen in einem Phospholidmodellsystem – sogenannten inversen Mizellen - mit variablen Wassergehalt zwischen einem und 16 Wassermolekülen pro Phospholipid untersucht. Die schnellsten Prozesse an den Grenzflächen wie z.B. Phosphat-Wasser-Wasserstoffbrückendynamik und Schwingungsenergieumverteilung finden auf einer Femto- bis Pikosekundenzeitskala statt. Molekulare Schwingungen sind sensitive lokale Sonden für die Struktur und Dynamik. Deshalb ermöglicht Femtosekunden-Schwingungsspektroskope, insbesondere zweidimensionale Infrarotspektroskopie (2D IR) und Pump-Probe-Spektroskopie in einem breiten Spektralbereich, die Dynamik mikroskopischer Phosphat-Wasser-Wechselwirkungen in Echtzeit zu beobachten. Wir zeigen die ersten zweidimensionalen Infrarotspektren von Phosphat-Streckschwingungen, die unabhängig vom Wassergehalt grenzflächensensitive Sonden darstellen. Solche Spektren belegen, dass die schnellsten strukturellen Fluktuationen der Phospholipid-Kopfgruppen auf einer 300-fs Zeitskala ablaufen, wohingegen die Phosphat-Wasser-Wasserstoffbrücken länger als 10 ps bestehen bleiben. Die Schwingungsdynamik intramolekularer Wasserschwingungen, d.h. der OH-Streck- und Biegeschwingung, zeigen, dass sich kleine Wasserpools um die Phosphatgruppen bilden, sobald drei oder mehr Wassermoleküle pro Phospholipid vorliegen. Solche Wasserpools dienen als effiziente Wärmesenken für intramolekulare Schwingungen des Wassers und der Phosphatgruppen. / Charged phosphate groups are the major hydration sites of biomolecules such as phospholipids and DNA. Hydration shells play a key role in the formation and stabilization of cell membranes and the DNA double helix structure. Here, we introduce phospholipid reverse micelles with variable water content (between one and sixteen water molecules per phospholipid) as a model system to study elementary phosphate-water interactions. The fastest processes at phosphate-water interfaces , e.g. hydrogen-bond dynamics and vibrational energy transfer occur on a femto- to picosecond time scale. Since molecular vibrations are sensitive local probes of the structure and dynamics, the use of femtosecond vibrational spectroscopy, in particular two-dimensional infrared spectroscopy (2D IR) and pump-probe spectroscopy in a broad spectral range, allow for the observation of microscopic phosphate-water interactions in real time. We present the first two-dimensional infrared spectra of phosphate stretching vibrations that represent true interfacial probes independent of the hydration level. Such spectra reveal that the fastest structural fluctuations of phospholipid headgroups occur on a 300-fs timescale whereas phosphate-water hydrogen bonds are preserved for >10 ps. Vibrational dynamics of intramolecular water vibrations, i.e., the OH stretching and bending modes show that small water pools around the phosphate groups form when three or more water molecules per phospholipid are present. Such water pools act as efficient heat sinks of excess energy deposited in intramolecular vibrations of water or the phosphate groups.

No description available.

Les membranes cellulaires naturelles sont des structures complexes et posent de nombreux problèmes lorsqu'elles sont étudiées dans leur forme native. Par conséquent, des systèmes modèles lipidiques plus simples sont souhaitables pour étudier les composants des membranes cellulaires et leur interaction avec les molécules biologiques. Immobiliser ces modèles lipidiques sur des surfaces solides métalliques, pour former des bicouches biomimétiques supportées (SLB pour Supported Lipid Bilayer en anglais), est encore plus avantageux grâce leur adaptabilité à de nombreuses techniques de caractérisation de surface, telles que la microscopie de force atomique (AFM), la spectroscopie de résonance des plasmons de surface (SPR), l’électrochimie et les spectroscopies vibrationnelles (IR, Raman). Former ces bicouches lipidiques supportées par fusion des vésicules a toujours été la technique la plus adaptée vue sa simplicité et son efficacité. Cependant, cette technique exige des conditions expérimentales critiques comme la nécessité de surfaces planes lisses et hydrophiles (mica, verre…), des vésicules à base de phospholipides zwitterioniques en phase fluide, une concentration élevée en lipides, et une longue durée d’incubation (>1h). Dans cette thèse, nous visons à développer une nouvelle méthode simple, rapide et polyvalente permettant de former une large gamme de bicouches biomimétiques supportées, de type zwitterionique et anionique, en phase gel et fluide sur un substrat d’or. Cette nouvelle approche consiste en l’utilisation des réactions d’appariement ionique générées par un système rédox confiné en surface pour induire l’assemblage de phospholipides et former la bicouche lipidique. Le premier objectif de cette thèse est d’étudier le comportement électrochimique d’une monocouche auto-assemblée de ferrocényldodécanethiolates (FcC12SAu) en présence de molécules amphiphiles avec des groupes anioniques de types carboxyle (sel d’acide gras) et phosphate (groupes qu’on trouve dans les phospholipides) et une simple chaîne hydrocarbonée. Dans le même contexte, nous viserons également l’utilisation des réactions d’appariement ionique pour induire l’assemblage des surfactants n-alkyl carboxylate et n-alkyl phosphate à l’interface SAM/électrolyte. Le second objectif de ce travail de thèse consiste en l’utilisation du système rédox confiné en surface pour déclencher par appariement ionique l’assemblage des phospholipides (molécules amphiphiles à double chaînes hydrocarbonées) pour former des bicouches biomimétiques supportées sur une surface d’or, à partir de vésicules unilamellaires, à température ambiante et en quelques minutes. La couverture de surface en ferrocènes et l’hydrophobicité/hydrophilicité de la surface seront altérées par la suite pour investiguer l’effet sur la formation des bicouches lipidiques supportées. / Natural cell membranes are complex structures and may present many problems when studied in their native form. It is therefore desirable to have simpler lipid bilayer systems to study the components of cell membranes and their interaction with biological molecules. Immobilizing these lipid membranes on metallic solid surfaces, to form Supported Lipid Bilayers (SLB), is more advantageous due to the integrity with a wide range of surface-sensitive characterization techniques, such as atomic force microscopy (AFM), surface plasmon resonance spectroscopy (SPR), electrochemistry and vibrational spectroscopies (IR, Raman). The preparation of SLBs by vesicle fusion has always been the most suitable technique due to its simplicity and efficiency, but it requires critical experimental conditions such as the need for smooth and hydrophilic flat surfaces (mica, glass...), vesicles based on zwitterionic phospholipids in fluid phase, high lipid concentration, and lengthy SLB preparation times (>1h). In this thesis, we aim to develop a new simple, fast, and versatile method to form a wide range of supported biomimetic bilayers using zwitterionic and anionic phospholipid vesicles in gel and fluid phase on a gold substrate. This new approach consists in the use of ionic pairing reactions generated by a surface-confined redox system to induce the assembly of phospholipids and form the lipid bilayer. The first part of this thesis focuses on studying the electrochemical behavior of a self-assembled monolayer of ferrocenyldodecanethiolates (FcC12SAu) in the presence of amphiphilic molecules containing a carboxyl (fatty acid salt) and phosphate anionic group and a single hydrocarbon chain. This part will also focus on the use of ion-pairing reactions to induce the assembly of n-alkyl carboxylate and n-alkyl phosphate surfactants at the SAM/electrolyte interface. The second and main objective of this thesis work was subsequently devoted to the use of the surface-confined redox system to trigger by ion-pairing the assembly of phospholipids (amphiphilic molecules with double hydrocarbon chains) to form biomimetic bilayers supported on a gold surface from unilamellar vesicles at room temperature and within minutes. The surface coverage of ferrocenes and the hydrophobicity/hydrophilicity of the surface will be altered later to investigate the effect on the formation of supported lipid bilayers.