Le travail de thèse est dédié à la caractérisation de fusions spécifiques oncogéniques entre les gènes FGFR et TACC dans les gliomes. Nous avons analysé 907 gliomes pour la présence du gène de fusion FGFR3-TACC3. Nous avons montré que les fusions FGFR3-TACC3 ne touchent que les gliomes IDH wild-type (3%), sont mutuellement exclusives avec l'amplification de EGFR et avec la forme tronquée EGFRvIII et inversement, sont associées à l'amplification de CDK4 et de MDM2 et à la délétion du 10q. Les fusions FGFR3-TACC3 sont associées à une expression intense et diffuse de FGFR3 en immunohistochimie (IHC) et l'IHC pour FGFR3 est un marqueur prédictif très sensible de la présence des fusions FGFR3-TACC3. Les patients porteurs d'une fusion FGFR3-TACC3 ont une survie globale significativement plus longue comparés aux patients avec gliome IDH wild-type. Nous avons traité deux patients porteurs d'un gène de fusion FGFR3-TACC3 avec un inhibiteur tyrosine-kinase (TK) spécifique pour FGFR et nous avons observé une stabilisation de maladie et une réponse mineur chez un patient. Dans la deuxième section nous avons optimisé une nouvelle séquence de spectroscopie différentielle-MEGA-PRESS-pour la détection de l'oncometabolite 2-hydroxyglutarate (2 HG) qui s'accumule de manière spécifique dans les gliomes IDH mutés. Nous avons analysé de façon prospective une cohorte de 25 patients avant chirurgie pour probable gliome de grade II et grade III. Nous avons trouvé que la MEGA-PRESS est hautement spécifique (100%) et sensible (80%) dans la prédiction de la présence de la mutation IDH. Son taux est corrélé aux concentrations de 2 HG mesurés sur tissu congelé par spectrométrie de masse (GC-MS/MS). / This work is devoted to the characterization of a specific oncogenic fusion between FGFR and TACC genes in gliomas. Overall, we screened 907 gliomas for FGFR3-TACC3 fusions. We found that FGFR3-TACC3 fusions exclusively affect IDH wild-type gliomas (3%), and are mutually exclusive with the EGFR amplification and the EGFR vIII variant, whereas it co-occurs with CDK4 amplification, MDM2 amplification and 10q loss. FGFR3–TACC3 fusions were associated with strong and homogeneous FGFR3 immunostaining. We show that FGFR3 immunostaining is a sensitive predictor of the presence of FGFR3-TACC3 fusions. FGFR3-TACC3 glioma patients had a longer overall survival than those patients with IDH wild-type glioma. We treated two patients with FGFR3–TACC3 rearrangements with a specific FGFR-TK inhibitor and we observed a clinical improvement in both and a minor response in one patient. In the second section, we developed a non-invasive diagnostic tool by 1H-magnetic resonance spectroscopy in IDH mutant gliomas. We optimized a uniquely different spectroscopy sequence called MEGA-PRESS for the detection of the oncometabolite 2-hydroxyglutarate (2 HG) that specifically accumulates in IDH mutant gliomas. We analysed a prospective cohort of 25 patients before surgery for suspected grade II and grade III gliomas and we assessed specificity and sensitivity, correlation with 2 HG concentrations in the tumor and associations with grade and genomic background. We found that MEGA-PRESS is highly specific (100%) and sensitive (80%) for the prediction of IDH mutation and correlated with 2 HG levels measured by gas chromatography-tandem mass spectrometry (GC-MS/MS) in frozen tissue.

Introduction: Bone loss, fractures, and declining physical performance are associated with muscle atrophy and fat infiltration. Muscle structure and composition differences may be apparent between women with and without osteoporosis (OP). Purpose: To: 1) evaluate the effect of a time period spent in supine on magnetic resonance imaging (MRI) measures of muscle size and diffusion properties in young and older women; 2) assess the feasibility of applying three MRI scanning methods to evaluate macrostructural and microstructural properties of leg muscles in older women; and 3) compare musculoskeletal tissue structure and composition between older women with and without OP, and to determine the relationships between bone, muscle, fat, and physical performance. Methods: Sixteen young and older women had their legs scanned with MRI at baseline and after 30 and 60 minutes of supine resting. Feasibility of recruitment, participant tolerance to scanning, and image acquisition and analysis protocols were assessed. Thirty-five moderately active, older women with and without OP underwent MRI and peripheral quantitative computed tomography scanning of the leg and performed physical performance tests. Results: In young and older women, muscle size did not change with time spent supine, but water diffusivity decreased in some muscle regions. It is feasible to perform a single session of three MRI scanning techniques in older women. Women with and without OP had similar musculoskeletal structure that showed fat infiltration is associated with reduced bone strength and slower gait speed. Conclusions: In young and older women, muscle size is unaffected by a period of supine rest, but time spent in supine may modify water diffusivity measures. It is feasible to use a combination of MRI scanning techniques to evaluate leg muscle structure in older women. MRI improves our understanding of the relationships among muscle, fat, bone, and physical performance. / Dissertation / Doctor of Science (PhD)

Background: Circadian rhythm disturbance is commonly observed in Alzheimer's disease (AD). In mammals, these rhythms are orchestrated by the superchiasmatic nucleus (SCN). Our previous study in the Tg2576 AD mouse model suggests that inflammatory responses, most likely manifested by low GABA production, may be one of the underlying perpetrators for the changes in circadian rhythmicity and sleep disturbance in AD. However, the mechanistic connections between SCN dysfunction, GABA modulation, and inflammation in AD is not fully understood. Objective: To reveal influences of amyloid pathology in Tg2576 mouse brain on metabolism in SCN and to identify key metabolic sensors that couple SCN dysfunction with GABA modulation and inflammation. Methods: High resolution magic angle spinning (HR-MAS) NMR in conjunction with multivariate analysis was applied for metabolic profiling in SCN of control and Tg2576 female mice. Immunohistochemical analysis was used to detect neurons, astrocytes, expression of GABA transporter 1 (GAT1) and Bmal1. Results: Metabolic profiling revealed significant metabolic deficits in SCN of Tg2576 mice. Reductions in glucose, glutamate, GABA, and glutamine provide hints toward an impaired GABAergic glucose oxidation and neurotransmitter cycling in SCN of AD mice. In addition, decreased redox co-factor NADPH and glutathione support a redox disbalance. Immunohistochemical examinations showed low expression of the core clock protein, Bmal1, especially in activated astrocytes. Moreover, decreased expression of GAT1 in astrocytes indicates low GABA recycling in this cell type. Conclusion: Our results suggest that redox disbalance and compromised GABA signaling are important denominators and connectors between neuroinflammation and clock dysfunction in AD.

Parkinson’s disease (PD) is a neurodegenerative disorder that is characterised by a reduction of dopamine concentration in the striatum due to degeneration of dopaminergic neurons in the substantia nigra. Currently, first line treatment of PD includes the use of dopamine precursors, dopamine agonists and inhibitors of enzymatic degradation of dopamine, in an effort to restore dopamine levels and/or its effects. However, all these therapeutic strategies are only symptomatic and unfortunately do not slow, stop or reverse the progression of PD. From the discovery of adenosine A2A receptor-dopamine D2 receptor heteromers and the antagonistic interaction between these receptors, the basis of a new therapeutic approach towards the treatment of PD emerged. Adenosine A2A receptor antagonists have been shown to decrease the motor symptoms associated with PD, and are also potentially neuroprotective. The possibility thus exists that the administration of an adenosine A2A antagonist may prevent further neurodegeneration. Furthermore, the antagonism of adenosine A1 receptors has the potential of treating cognitive deficits such as those associated with Alzheimer's disease and PD. Therefore, dual antagonism of adenosine A1 and A2A receptors would be of great benefit since this would potentially treat both the motor as well as the cognitive impairment associated with PD. The affinities (Ki-values between 0.6 mM and 38 mM) of a series of 1,4-dihydropyridine derivatives were previously illustrated for the adenosine A1, A2A and A3 receptor subtypes by Van Rhee and co-workers (1996). These results prompted this pilot study, which aimed to investigate the potential of the structurally related 3,4-dihydropyrimidin-2(1H)-ones (dihydropyrimidones) and 2-amino-1,4-dihydropyrimidines as adenosine A1 and A2A antagonists. In this pilot study, a series of 3,4-dihydropyrimidones and 2-amino-1,4-dihydropyrimidines were synthesised and evaluated as adenosine A1 and A2A antagonists. Since several adenosine A2A antagonists also exhibit MAO inhibitory activity, the MAO-inhibitory activity of selected derivatives was also assessed. A modified Biginelli one pot synthesis was used for the preparation of both series of compounds under solvent free conditions. A mixture of a β- diketone, aldehyde and urea/guanidine hydrochloride was heated for an appropriate time to afford the desired compounds in good yields. MAO-B inhibition studies comprised of a fluorometric assay where kynuramine was used as substrate. A radioligand binding protocol described in literature was employed to investigate the binding of the compounds to the adenosine A2A and A1 receptors. The displacement of N-[3H]ethyladenosin-5’-uronamide ([3H]NECA) from rat striatal membranes and 1,3-[3H]-dipropyl-8-cyclopentylxanthine ([3H]DPCPX) from rat whole brain membranes, was used in the determination of A2A and A1 affinity, respectively. The results showed that both 3,4-dihydropyrimidones and 2-amino-1,4-dihydropyrimidines had weak adenosine A2A affinity, with the p-fluorophenyl substituted dihydropyrimidone derivative (1h) in series 1, exhibiting the highest affinity for the adenosine A2A receptor (28.7 μM), followed by the p-chlorophenyl dihydropyrimidine derivative (2c) in series 2 (38.59 μM). Both series showed more promising adenosine A1 receptor affinity in the low micromolar range. The p-bromophenyl substituted derivatives in both series showed the best affinity for the adenosine A1 receptor with Ki-values of 7.39 μM (1b) and 7.9 μM (2b). The pmethoxyphenyl dihydropyrimidone (1d) and p-methylpneyl dihydropyrimidine (2e) derivatives also exhibited reasonable affinity for the adenosine A1 receptor with Ki-values of 8.53 μM and 9.67 μM, respectively. Neither the 3,4-dihydropyrimidones nor the 2-amino-1,4- dihydropyrimidines showed MAO-B inhibitory activity. Comparison of the adenosine A2A affinity of the most potent derivative (1h, Ki = 28.7 μM) from this study with that of the previously synthesised dihydropyridine derivatives (Van Rhee et al., 1996, most potent compound had a Ki = 2.74 mM) reveals that an approximate 100- fold increase in binding affinity for A2A receptors occurred. However, KW6002, a known A2A antagonist, that has already reached clinical trials, has a Ki-value of 7.49 nM. The same trend was observed for adenosine A1 affinity, where the most potent compound (1b) of this study exhibited a Ki-value of 7.39 μM compared to 2.75 mM determined for the most potent dihydropyridine derivatives (Van Rhee et al., 1996). N6-cyclopentyladenosine (CPA), a known adenosine A1 agonist that was used as a reference compound, however had a Kivalue of 10.4 nM. The increase in both adenosine A1 and A2A affinity can most likely be ascribed to the increase in nitrogens in the heterocyclic ring (from a dihydropyridine to a dihydropyrimidine) since similar results were obtained by Gillespie and co-workers in 2009 for a series of pyridine and pyrimidine derivatives. In their case it was found that increasing the number of nitrogens in the heterocyclic ring (from one to two nitrogen atoms for the pyridine and pyrimidine derivatives respectively) increased affinity for the adenosine A2A and adenosine A1 receptor subtypes, while three nitrogen atoms in the ring (triazine derivatives) were associated with decreased affinity. It thus appears that two nitrogen atoms in the ring (pyrimidine) are required for optimum adenosine A1 and A2A receptor affinity. The poor adenosine A2A affinity exhibited by the compounds of this study can probably be attributed to the absence of an aromatic heterocyclic ring. The amino acid, Phe-168 plays a very important role in the binding site of the A2A receptor, where it forms aromatic - - stacking interactions with the heterocyclic aromatic ring systems of known agonists and antagonists. Since the dihydropyrimidine ring in both series of this pilot study was not aromatic, the formation of aromatic - -stacking interactions with Phe-168 is unlikely. In conclusion, the 3,4-dihydropyrimidone and 2-amino-1,4-dihydropyrimidine scaffolds can be used as a lead for the design of novel adenosine A1 and A2A antagonists, although further structural modifications are required before a clinically viable candidate will be available as potential treatment of PD. / MSc (Pharmaceutical Chemistry), North-West University, Potchefstroom Campus, 2014

Cette thèse a permis de mettre en évidence les mécanismes de vieillissement de la pile à combustible de type PEM lors de cyclages d'humidité de l'air et suite à la perforation de l'AME (Assemblage Membrane Electrodes). Premièrement, les mécanismes connus de dégradation des divers composants (membrane, catalyseur, support du catalyseur, GDL, plaques bipolaires et joints d'étanchéité) ont été présentés. Ensuite, les outils de diagnostic en-ligne (chronopotentiométrie, spectroscopie d'impédance, gestion de l'eau et analyse chimique de l'eau) et ceux hors-ligne (CV et LSV) ainsi que des analyses post-mortem (RMN, MET, MEB et DRX) ont été décrits. Expérimentalement, le cyclage en humidité de l'air a été effectué en mono-cellule de 25 cm2: le cyclage à forte humidité entraîne une perte significative de la surface électroactive du catalyseur; le cyclage à faible humidité favorise la perméation de l'hydrogène à travers la membrane. Le cyclage à faible humidité réalisé sur une pile de 100 cm2 a montré un mécanisme de dégradation différent de celui de la pile de 25 cm2: la perméation de l'hydrogène reste faible alors que la tension de la pile était de plus en plus fluctuante certainement du fait de la présence de volumes morts et de la rétention d'eau liquide dans la pile. L'effet de la perforation de l'AME a été étudié sur une pile de 100 cm2: la perforation par une punaise de 0,7 mm de diamètre ne génère qu'une légère augmentation de la perméation de l'hydrogène; la perforation par une punaise de 1,2 mm de diamètre entraîne une chute de tension et l'augmentation significative de la résistance de diffusion de l'oxygène due à la perméation importante de l'hydrogène / This thesis highlights the aging mechanisms of PEM Fuel Cell submitted to two main aging conditions: air relative humidity (RH) cycling, and MEA (Membrane Electrode Assembly) pinhole test of operation. First, the aging mechanisms of PEMFC main components (membrane, catalyst, carbon support, GDL, bipolar plates and gaskets), have been reviewed from the literature. Then the on-line diagnostic tools (chronopotentiometry, electrochemical impedance spectroscopy, water management and water analysis), off-line ones (cyclic voltammetry and linear sweep voltammetry) and post-mortem analyses (nuclear magnetic resonance, transmission electron microscopy, scanning electron microscopy and X-ray diffraction) have been described. Experimentally, the high and low air RH cycling runs have been carried out with a 25 cm2 single cell: the high air RH cycling run promoted serious loss of the ElectroChemical Surface Area (ECSA); the low air RH cycling run caused significant increase in hydrogen crossover. The low air RH cycling has been also performed with a 100 cm2 single cell and the aging mechanism was different from that of 25 cm2 cell: the hydrogen crossover remained very low but the fuel cell voltage exhibited strong fluctuations at the end of the run: this was attributed to the presence of dead volumes and liquid water retention within the cell. Finally, MEA pinhole effect has been investigated with a 100 cm2 single cell: the perforation by a 0.7 mm diameter pin promoted slight increase in the hydrogen crossover; the perforation by a 1.2 mm diameter pin caused significant cell voltage losses and serious increase in the cathode diffusion resistance due to significant hydrogen crossover

Les produits issus de la biomasse végétale connaissent depuis quelques années un succès grandissant dans de nombreuses industries (aromathérapie, cosmétique, parfums, etc.). L’objectif de notre étude était, d’une part de contribuer au développement des méthodes d’identification et de quantification des constituants des mélanges naturels par RMN 13C et RMN 1H (par exemple le squalène dans l’huile d’olive), et d’autre part, de contribuer à la caractérisation chimique de deux conifères introduits en Corse, le pin d’Alep (huile essentielle) et le cèdre de l’Atlas (huile essentielle, huile pyrolytique et résine).La première partie concerne la quantification du squalène présent dans l’huile d’olive. En effet, ce triterpène linéaire participe à la stabilité oxydative de l’huile d’olive et joue un rôle important dans la réduction des risques de certains cancers. Il s’agissait de mettre au point un protocole expérimental basé sur la RMN 1H ou 13C en utilisant un appareil de routine (9,4 Tesla). La quantification par RMN 13C s’est avérée fiable et elle a été appliquée à la quantification du squalène dans 25 échantillons d’huile d’olive de Corse.La seconde partie de nos travaux concerne la caractérisation chimique de l’huile essentielle de pin d’Alep introduit dans trois stations de Corse (Capo di Feno, Saleccia et Tre Padule de Suartone). L’analyse détaillée de l’huile essentielle de cônes, par combinaison des techniques chromatographiques et spectroscopiques, a permis d’identifier 48 composés. La composition chimique est largement dominée par les monoterpènes (Alpha-pinène et myrcène) et un sesquiterpène oléfinique ((E)-Béta-caryophyllène). La RMN 13C a permis d’identifier divers diterpènes, dont le 8,12-époxy-14-labdèn-13-ol. Ce composé est décrit pour la première fois dans l’huile essentielle de pin d’Alep. L’analyse de 15 échantillons d’huile essentielle de cônes a mis en évidence trois types de compositions : Alpha-pinène ; myrcène ; Alpha-pinène/myrcène. Enfin, l’analyse de 47 échantillons d’huile essentielle d’aiguilles, associée à un traitement statistique des données (ACP, AFD), a permis de mettre en évidence une variabilité chimique intraspécifique. Ainsi, les échantillons se répartissent en trois groupes selon leur teneur en (E)-Béta-caryophyllène (groupe I), en E-Béta-caryophyllène/Alpha-pinène/myrcène (groupe II) et en myrcène (groupe III).La dernière partie a été consacrée à l’étude de Cedrus atlantica. L’analyse détaillée d’une huile essentielle commerciale (du Maroc) a permis d’identifier 20 constituants, les composés majoritaires sont les Alpha-, Béta- et Gamma-himachalène. Par ailleurs, 7 composés absents de notre bibliothèque de données spectrales ont été identifiés par RMN 13C. Les compositions chimiques des huiles pyrolytiques artisanales du Maroc sont également dominées par les himachalènes et la (E)-Alpha-atlantone. Enfin, nous avons réalisé l’analyse qualitative et quantitative par RMN 13C, sans séparation préalable, de 28 échantillons de résine de C. atlantica récoltés dans les 5 forêts de Corse référencées par l’ONF (Bavella, Bonifato, Ospedale, Pineta et Vizzavona). A côté des acides résiniques, nous avons également identifié 3 lignanes (pinorésinol, laricirésinol et 9-acétate de laricirésinol). Pour l’ensemble de ces composés, nous avons mis en évidence trois types chimiques. Enfin, nous avons mis au point et validé un protocole expérimental de quantification des lignanes par RMN 1H. / Natural products isolated from plants acquired, in recent years, a growing success in many industries (aromatherapy, cosmetic, perfumes). The objective of our study was to contribute, on the one hand, to the development of methods involving 13C and 1H NMR for the identification and quantification of the components of natural mixtures, and on the other hand, to the chemical characterization of two conifers brought to Corsica, Aleppo pine (essential oil) and atlas cedar (essential oil, pyrolysis oil and resins).The first part concerned the quantification of squalene present in olive oil. Indeed, linear triterpene participated in the oxidative stability of olive oil and play an important role by decreasing some kind of cancers risks. It’s deal with to elaborate an experimental part based on NMR 1H and 13C by using routine apparatus (9.4 Tesla). Quantification by NMR 13C is reliable and have been applied to squalene quantification in 25 samples of Corsican olive oil.The second part of our work concerned the chemical characterization of the essential oil of Aleppo pine brought to Corsica in three different stations (Capo di Feno, Saleccia and Tre Padule de Suartone). A detailed analysis of cone essential oil, using the combination of chromatographic and spectroscopic techniques, leads to the identification of 48 compounds. Chemical composition is extensively dominated by monoterpens (Alpha-pinene and myrcene) and one olefinic sesquiterpen ((E)-Béta-caryophyllene). 13C NMR allowed to the identification of various diterpens, particularly the 8,12-epoxy-14-labden-13-ol. This compound is described for the first time in aleppo pine essential oil. Fifteen samples of cone essential oil were analysed allowing differentiating three kinds of compositions: Alpha-pinene; myrcene; Alpha-pinene/myrcene. Finally, analysis of 47 samples of needles essential oil, associated with statistical treatment of the results (PCA and PFA), suggested the occurrence of an intraspecific chemical variability. Samples are divided into three groups, based on their high contents in (E)-Béta-caryophyllene (groupe I), in (E)-Béta-caryophyllene/Alpha-pinene/myrcene (groupe II) and in myrcene (groupe III).The last part concerned the study of Cedrus atlantica. A detailed analysis of commercial essential oil leads to the identification of 20 constituents. Main compounds are Alpha-, Béta- and Gamma-himachalene. Moreover, seven compounds, not yet referenced in our home-made NMR spectral data library, were identified by NMR 13C. Chemical compositions of handwork pyrolysis oils from Morocco were also dominated by the himachalene’s and (E)--atlantone. Qualitative and quantitative analysis of 28 samples of Cedrus atlantica resins, obtained from the five Corsican forests referenced by the Office National des Forêts of Corsica (Bavella, Bonifato, Ospedale, Pineta and Vizzavona) have been done, without any step of chromatography. Beside resinic acids, we have been identified three lignans (pinoresinol, lariciresinol and lariciresinol-9-acetate). Qualitative and quantitative analysis of these compounds, leads to the occurrence of three types of chemical composition. Finally, we have developed and validated a method for quantification of lignans by 1H NMR.

A precisão e acurácia dos métodos mais utilizados atualmente de processamento de dados de espectroscopia por Ressonância Magnética (MRS), baseados na Transformada de Fourier (FT), requerem supressão apropriada (o que está longe de ser trivial) e aquisições longas para a obtenção de alta resolução espectral. Além disso, a FT tem dificuldades quando faltam dados no domínio de tempo, como, por exemplo, pela redução do tempo de aquisição, e consequente número de pontos adquiridos. Isto pode ocorrer, também, por artefatos na aquisição ou, ainda, seja pela exclusão intencional dos primeiros pontos do sinal para a eliminação de ressonâncias largas que estão distorcendo a linha de base no domínio da frequência. Neste estudo, propomos a utilização do Método de Diagonalização na Base de Krylov (KBDM) como uma alternativa a FT para algumas de suas limitações. O método ajusta sinais de experimentos de Free Induction Decay (FID) por uma soma de funções harmônicas complexas, amortecidas exponencialmente, permitindo uma fácil manipulação dos seus parâmetros de caracterização. O KBDM é numericamente mais efetivo para análise de sinais truncados e tem diversos recursos que possibilitam remover picos de forma mais eficiente, como por exemplo, o pico residual da água. Além disso, foi introduzida a possibilidade de quantificação de dados de MRS com o método. Para avaliar a sensibilidade, eficiência e reprodutibilidade do método para quantificar e analisar sinais truncados, foi proposto fazer simulações de espectros clínicos e experimentos em phantoms que representassem o ambiente metabólico do cérebro, para MRS de próton de diferentes níveis de ruídos e para pequenas variações do N-acetil aspartato (NAA). Com estes estudos pôde se comprovar a viabilidade do método para processar dados de MRS e verificar seu potencial na complementação das técnicas atualmente empregadas, especialmente quando uma resolução espectral e temporal maior que o limite imposto pela Relação de Incerteza do formalismo de Fourier é necessária. Além disso, uma desejável facilidade de manipulação de picos específicos (por exemplo, exclusão e quantificação) é proporcionada pelo método. Como perspectivas animadoras deste trabalho esperamos a introdução do KBDM como uma técnica eficiente e coadjuvante ao Imageamento de Ressonância Magnética funcional (fMRI), auxiliando estudos de funções cerebrais, em sequências de MRS para identificar uma rápida variação das linhas associadas as atividades metabólicas dos cérebros. / The precision and accuracy of the most widely used methods to perform Magnetic Resonance Spectroscopy (MRS) data processing based on the Fourier Transform (FT), require appropriate suppression (which is far from trivial) and long acquisitions to obtain high spectral resolution. Furthermore, FT poses difficulty when there are missing data in the time domain. This occurs because of reduction of the acquisition time and consequently also in the number of acquired points, or because of artifacts during acquisition, or even intentional exclusion of the first signal points for the elimination of broad resonances that are producing the distorted baseline in the frequency domain. In this study, we propose the use of the Krylov Basis Diagonalization Method (KBDM) formalism as an alternative to some of FT limitations. The method adjusts signals of Free Induction Decay (FID) experiments with a sum of complex harmonic functions, exponentially damped, allowing easy manipulation of its characterization parameters. The KBDM is numerically more effective for truncated signal analysis and has several features that make it possible to remove peaks more efficiently, such as the residual water peak. Moreover, we introduced the possibility of quantification of MRS data with the described method. To evaluate the sensitivity, efficiency and reproducibility of the method for quantifying and analyzing truncated signals, and through the clinical spectra simulations and experiments in phantoms that would represent the brain metabolic environment, we proposed to perform proton MRS at different noise levels and with small variations of N- acetyl aspartate (NAA) metabolite. These studies allowed to prove the feasibility of the method to process MRS data and verified its potential in complementing techniques currently employed, especially when a greater temporal and spectral resolution is required, more than the limit imposed by the Uncertainty Relation of FT formalism. Furthermore, it is also a desirable effortless tool of handling specific peaks (e.g., exclusion and quantification). Exciting prospects from this work include the introduction of KBDM as an efficient and adjuvant technique to functional Magnetic Resonance Imaging (fMRI), for studying the brain functions, in MRS sequence to identify rapid variation in spectroscopic lines associated to metabolic activities in the brain.

Parkinson’s disease (PD) is a neurodegenerative disorder that is characterised by a reduction of dopamine concentration in the striatum due to degeneration of dopaminergic neurons in the substantia nigra. Currently, first line treatment of PD includes the use of dopamine precursors, dopamine agonists and inhibitors of enzymatic degradation of dopamine, in an effort to restore dopamine levels and/or its effects. However, all these therapeutic strategies are only symptomatic and unfortunately do not slow, stop or reverse the progression of PD. From the discovery of adenosine A2A receptor-dopamine D2 receptor heteromers and the antagonistic interaction between these receptors, the basis of a new therapeutic approach towards the treatment of PD emerged. Adenosine A2A receptor antagonists have been shown to decrease the motor symptoms associated with PD, and are also potentially neuroprotective. The possibility thus exists that the administration of an adenosine A2A antagonist may prevent further neurodegeneration. Furthermore, the antagonism of adenosine A1 receptors has the potential of treating cognitive deficits such as those associated with Alzheimer's disease and PD. Therefore, dual antagonism of adenosine A1 and A2A receptors would be of great benefit since this would potentially treat both the motor as well as the cognitive impairment associated with PD. The affinities (Ki-values between 0.6 mM and 38 mM) of a series of 1,4-dihydropyridine derivatives were previously illustrated for the adenosine A1, A2A and A3 receptor subtypes by Van Rhee and co-workers (1996). These results prompted this pilot study, which aimed to investigate the potential of the structurally related 3,4-dihydropyrimidin-2(1H)-ones (dihydropyrimidones) and 2-amino-1,4-dihydropyrimidines as adenosine A1 and A2A antagonists. In this pilot study, a series of 3,4-dihydropyrimidones and 2-amino-1,4-dihydropyrimidines were synthesised and evaluated as adenosine A1 and A2A antagonists. Since several adenosine A2A antagonists also exhibit MAO inhibitory activity, the MAO-inhibitory activity of selected derivatives was also assessed. A modified Biginelli one pot synthesis was used for the preparation of both series of compounds under solvent free conditions. A mixture of a β- diketone, aldehyde and urea/guanidine hydrochloride was heated for an appropriate time to afford the desired compounds in good yields. MAO-B inhibition studies comprised of a fluorometric assay where kynuramine was used as substrate. A radioligand binding protocol described in literature was employed to investigate the binding of the compounds to the adenosine A2A and A1 receptors. The displacement of N-[3H]ethyladenosin-5’-uronamide ([3H]NECA) from rat striatal membranes and 1,3-[3H]-dipropyl-8-cyclopentylxanthine ([3H]DPCPX) from rat whole brain membranes, was used in the determination of A2A and A1 affinity, respectively. The results showed that both 3,4-dihydropyrimidones and 2-amino-1,4-dihydropyrimidines had weak adenosine A2A affinity, with the p-fluorophenyl substituted dihydropyrimidone derivative (1h) in series 1, exhibiting the highest affinity for the adenosine A2A receptor (28.7 μM), followed by the p-chlorophenyl dihydropyrimidine derivative (2c) in series 2 (38.59 μM). Both series showed more promising adenosine A1 receptor affinity in the low micromolar range. The p-bromophenyl substituted derivatives in both series showed the best affinity for the adenosine A1 receptor with Ki-values of 7.39 μM (1b) and 7.9 μM (2b). The pmethoxyphenyl dihydropyrimidone (1d) and p-methylpneyl dihydropyrimidine (2e) derivatives also exhibited reasonable affinity for the adenosine A1 receptor with Ki-values of 8.53 μM and 9.67 μM, respectively. Neither the 3,4-dihydropyrimidones nor the 2-amino-1,4- dihydropyrimidines showed MAO-B inhibitory activity. Comparison of the adenosine A2A affinity of the most potent derivative (1h, Ki = 28.7 μM) from this study with that of the previously synthesised dihydropyridine derivatives (Van Rhee et al., 1996, most potent compound had a Ki = 2.74 mM) reveals that an approximate 100- fold increase in binding affinity for A2A receptors occurred. However, KW6002, a known A2A antagonist, that has already reached clinical trials, has a Ki-value of 7.49 nM. The same trend was observed for adenosine A1 affinity, where the most potent compound (1b) of this study exhibited a Ki-value of 7.39 μM compared to 2.75 mM determined for the most potent dihydropyridine derivatives (Van Rhee et al., 1996). N6-cyclopentyladenosine (CPA), a known adenosine A1 agonist that was used as a reference compound, however had a Kivalue of 10.4 nM. The increase in both adenosine A1 and A2A affinity can most likely be ascribed to the increase in nitrogens in the heterocyclic ring (from a dihydropyridine to a dihydropyrimidine) since similar results were obtained by Gillespie and co-workers in 2009 for a series of pyridine and pyrimidine derivatives. In their case it was found that increasing the number of nitrogens in the heterocyclic ring (from one to two nitrogen atoms for the pyridine and pyrimidine derivatives respectively) increased affinity for the adenosine A2A and adenosine A1 receptor subtypes, while three nitrogen atoms in the ring (triazine derivatives) were associated with decreased affinity. It thus appears that two nitrogen atoms in the ring (pyrimidine) are required for optimum adenosine A1 and A2A receptor affinity. The poor adenosine A2A affinity exhibited by the compounds of this study can probably be attributed to the absence of an aromatic heterocyclic ring. The amino acid, Phe-168 plays a very important role in the binding site of the A2A receptor, where it forms aromatic - - stacking interactions with the heterocyclic aromatic ring systems of known agonists and antagonists. Since the dihydropyrimidine ring in both series of this pilot study was not aromatic, the formation of aromatic - -stacking interactions with Phe-168 is unlikely. In conclusion, the 3,4-dihydropyrimidone and 2-amino-1,4-dihydropyrimidine scaffolds can be used as a lead for the design of novel adenosine A1 and A2A antagonists, although further structural modifications are required before a clinically viable candidate will be available as potential treatment of PD. / MSc (Pharmaceutical Chemistry), North-West University, Potchefstroom Campus, 2014

Gegenstand der vorliegenden Arbeit ist die UV/Vis-spektroskopische Bestimmung der Kamlet-Taft-Polaritätsparameter von strukturell unterschiedlichen Ionischen Flüssigkeiten (ILs), mit Hilfe von spezifischen solvatochromen Sondenmolekülen. Dabei wurden der Einfluss des Anions und Kations auf die Polarität, sowie die Stärke der Wechselwirkung zwischen beiden Ionen untersucht. Es konnte für Ionischen Flüssigkeiten mit dem 1-Butyl-3-methylimidazoliumkation eine 1H-NMR-spektroskopische Methode zur Ermittlung der Polaritätsparameter entwickelt werden. Diese bietet den Vorteil, dass sie auch bei farbigen, hydrolyseempfindlichen oder höher schmelzenden ILs eingesetzt werden kann, wenn die Anwendung solvatochromer Sondenmoleküle nicht möglich ist. Ein weiteres Augenmerk lag auf der Untersuchung der Wechselwirkung zwischen den ILs und silikatischen Oberflächen. Neben der Studie der anionenvermittelten starken Physisorption von 1-Methylimidazoliumchlorid an Aerosil®300 konnte auch eine neuartige Methode zur gezielten Chemisorption von Imidazolium- und Phosphoniumkationen an Siliziumdioxidoberflächen entwickelt werden. Dabei wurden verschieden Carbene und Ylide als basische IL-typische Kationenprecursoren eingesetzt. Die Analyse der erhaltenen Materialien erfolgte mit Hilfe verschiedener Methoden der Festkörper-NMR-Spektroskopie.

A precisão e acurácia dos métodos mais utilizados atualmente de processamento de dados de espectroscopia por Ressonância Magnética (MRS), baseados na Transformada de Fourier (FT), requerem supressão apropriada (o que está longe de ser trivial) e aquisições longas para a obtenção de alta resolução espectral. Além disso, a FT tem dificuldades quando faltam dados no domínio de tempo, como, por exemplo, pela redução do tempo de aquisição, e consequente número de pontos adquiridos. Isto pode ocorrer, também, por artefatos na aquisição ou, ainda, seja pela exclusão intencional dos primeiros pontos do sinal para a eliminação de ressonâncias largas que estão distorcendo a linha de base no domínio da frequência. Neste estudo, propomos a utilização do Método de Diagonalização na Base de Krylov (KBDM) como uma alternativa a FT para algumas de suas limitações. O método ajusta sinais de experimentos de Free Induction Decay (FID) por uma soma de funções harmônicas complexas, amortecidas exponencialmente, permitindo uma fácil manipulação dos seus parâmetros de caracterização. O KBDM é numericamente mais efetivo para análise de sinais truncados e tem diversos recursos que possibilitam remover picos de forma mais eficiente, como por exemplo, o pico residual da água. Além disso, foi introduzida a possibilidade de quantificação de dados de MRS com o método. Para avaliar a sensibilidade, eficiência e reprodutibilidade do método para quantificar e analisar sinais truncados, foi proposto fazer simulações de espectros clínicos e experimentos em phantoms que representassem o ambiente metabólico do cérebro, para MRS de próton de diferentes níveis de ruídos e para pequenas variações do N-acetil aspartato (NAA). Com estes estudos pôde se comprovar a viabilidade do método para processar dados de MRS e verificar seu potencial na complementação das técnicas atualmente empregadas, especialmente quando uma resolução espectral e temporal maior que o limite imposto pela Relação de Incerteza do formalismo de Fourier é necessária. Além disso, uma desejável facilidade de manipulação de picos específicos (por exemplo, exclusão e quantificação) é proporcionada pelo método. Como perspectivas animadoras deste trabalho esperamos a introdução do KBDM como uma técnica eficiente e coadjuvante ao Imageamento de Ressonância Magnética funcional (fMRI), auxiliando estudos de funções cerebrais, em sequências de MRS para identificar uma rápida variação das linhas associadas as atividades metabólicas dos cérebros. / The precision and accuracy of the most widely used methods to perform Magnetic Resonance Spectroscopy (MRS) data processing based on the Fourier Transform (FT), require appropriate suppression (which is far from trivial) and long acquisitions to obtain high spectral resolution. Furthermore, FT poses difficulty when there are missing data in the time domain. This occurs because of reduction of the acquisition time and consequently also in the number of acquired points, or because of artifacts during acquisition, or even intentional exclusion of the first signal points for the elimination of broad resonances that are producing the distorted baseline in the frequency domain. In this study, we propose the use of the Krylov Basis Diagonalization Method (KBDM) formalism as an alternative to some of FT limitations. The method adjusts signals of Free Induction Decay (FID) experiments with a sum of complex harmonic functions, exponentially damped, allowing easy manipulation of its characterization parameters. The KBDM is numerically more effective for truncated signal analysis and has several features that make it possible to remove peaks more efficiently, such as the residual water peak. Moreover, we introduced the possibility of quantification of MRS data with the described method. To evaluate the sensitivity, efficiency and reproducibility of the method for quantifying and analyzing truncated signals, and through the clinical spectra simulations and experiments in phantoms that would represent the brain metabolic environment, we proposed to perform proton MRS at different noise levels and with small variations of N- acetyl aspartate (NAA) metabolite. These studies allowed to prove the feasibility of the method to process MRS data and verified its potential in complementing techniques currently employed, especially when a greater temporal and spectral resolution is required, more than the limit imposed by the Uncertainty Relation of FT formalism. Furthermore, it is also a desirable effortless tool of handling specific peaks (e.g., exclusion and quantification). Exciting prospects from this work include the introduction of KBDM as an efficient and adjuvant technique to functional Magnetic Resonance Imaging (fMRI), for studying the brain functions, in MRS sequence to identify rapid variation in spectroscopic lines associated to metabolic activities in the brain.