In Saccharomyces cerevisiae nimmt die membrangebundene RING-Ub-Ligase Doa10 eine bedeutende Rolle in der Proteinqualitätskontrolle (PQC) des Endoplasmatischen Retikulums (ER) und des Nukleus ein. Doa10 katalysiert dabei die Verknüpfung K48- verbundener Ub-Ketten auf Proteine, die entweder in der ER-Membran oder löslich im Cytosol oder dem Nukleoplasma vorliegen. Diese Markierung leitet die Degradation dieser Proteine ein. Interessanterweise kooperiert Doa10, im Gegensatz zu anderen RING-Ub-Ligasen, mit zwei Ub-konjugierenden Enzymen (E2), um ihre Substrate zu prozessieren. In dieser Arbeit wird veranschaulicht, wie die beiden hochspezialisierten E2 Enzyme Ubc6 und Ubc7 sequentiell agieren, um Doa10 Substrate zu modifizieren. Zuerst wird ein einzelnes Ub-Molekül Ubc6-abhängig an ein Substrat konjugiert (Initiation). Von diesem Rest ausgehen katalysiert Ubc7 die Ausbildung einer K48-verbundenen Ub-Kette (Elongation). Die Fähigkeit von Ubc6 nicht nur Lysine, sondern auch hydroxylierten Aminosäuren wie Serin und Threonin mit Ub-Molekülen zu verknüpfen, erweitert das Substratspektrum von Doa10 und ermöglicht die Prozessieren von Proteinen, die keine zugänglichen Lysinreste exponieren. Weiterhin wird gezeigt, dass ein Überangebot von Ubc6 den Doa10-abhängigen Substratabbau beeinträchtigt. Dies weist darauf hin, dass die Generierung eines effizienten Poly-Ub-Signals einer streng kontrollierten Koordination beider E2 Enzyme am Doa10-Ligase-Komplex unterliegt. / In Saccharomyces cerevisiae, the membrane-bound RING-type Ub ligase Doa10 is a key player of Protein Quality Control (PQC) in the endoplasmic reticulum (ER) and the nucleus. Doa10 promotes lysine 48-linked poly-ubiquitylation of proteins that either reside in the ER membrane or are soluble in the cytosol or the nucleus and thereby labels them for degradation. Strikingly, in contrast to other RING Ub ligases, which typically employ a single Ub conjugating enzyme (E2) for substrate ubiquitylation, the Doa10 ligase requires two of such enzymes for client processing. This study demonstrates that the highly specialized E2 enzymes Ubc6 and Ubc7 act in a sequential manner on Doa10 client proteins. In a first step Ubc6 attaches a single Ub molecule to a substrate (priming), which is followed by the elongation of this moiety with K48-linked Ub chains by Ubc7 (elongation). The ability of Ubc6 to conjugate Ub not only to lysine but also to hydroxylated amino acids like serine and threonine broadens the substrate range of Doa10 and allows processing of proteins, which do not expose accessible lysine residues. Overproduction of Ubc6 was shown to impair Doa10 dependent substrate degradation. Apparently, the generation of a productive K48-linked poly-Ub signal requires a tightly coordinated activity of the individual E2 enzymes at the Doa10 ligase complex.

As partículas eliminadas na exaustão do diesel (DEP) são importantes fontes diárias de partículas inaladas, responsáveis por gerar espécies reativas de oxigênio no sistema respiratório, fazendo com que as células ativem mecanismos de defesa, como o sistema Keap1-Nrf2 e a autofagia. Para investigar o papel do Nrf2 no processo de autofagia induzida pelas DEPs, BEAS-2B foram expostas às DEP, coletadas diretamente de um motor a diesel. BEAS-2B foram tratadas com sulforafano, bafilomicina e EBSS para testar a relação entre as vias autofágica e antioxidante. A quantidade relativa de mRNA foi verificada por RT-PCR para os seguintes genes: Nrf2, NQO1, HO-1, p62, Atg5 e LCB3. A seguir, BEAS-2B foram transfectadas com RNA silenciador (siRNA) para Nrf2, expostas ou não às DEPs (10 e 50 micro g/mL por 1h e 2 h), e mRNA detectado por RT-PCR e Western blot para proteínas. Bafilomicina (inibidor de autofagia) mostrou uma diminuição significativa nos marcadores antioxidantes Nrf2 (p = 0,024), HO-1 (p = 0,002) e NQO1 (p = 0,003), enquanto sulforafano (ativador de Nrf2) aumentou os marcadores autofágicos LC3B (p = 0,004) e Atg5 (p = 0,007). BEAS-2B expostas às DEP na concentração de 50 micro g/mL por 2hs mostraram um aumento significativo nos genes autofágicos LC3B (p = 0,018) e p62 (p = 0,007) e nos genes da via antioxidante Nrf2 (p = 0,007) e NQO1 (p = 0,025). Houve uma diminuição significativa no mRNA de LC3B (p < 0,001), p62 (p = 0,001) e Atg5 (p = 0,024) nas células transfectadas com siRNA, expostas ou não à DEP. Western blotting mostrou uma redução das proteínas Nrf2, p62 e LC3II nas BEAS-2B siRNA, indicando que a exposição ao silenciamento de Nrf2 modificou a expressão de marcadores de autofagia (R < 1). Os resultados deste estudo mostram que, em células brônquicas expostas às DEP, o sistema Nrf2 e a autofagia trabalham em conjunto para tentar manter a homeostase celular / Diesel Exhaust Particles (DEPs) are main sources of daily inhaled particles, responsible for generating reactive oxygen species in the respiratory system, and causing the cells to activate defense mechanisms, such as the Keap1-Nrf2 system and autophagy. In order to investigate the role of Nrf2 in Dep-induced autophagy, BEAS-2B cells collected directly from a diesel engine were exposed to DEP and treated with sulforaphane, bafilomycin and BESS to test the relationship between autophagic and antioxidant pathways. The relative amount of mRNA was verified by RT-PCR for the following genes: Nrf2, NQO1, HO-1, p62, Atg5 and LCB3. Next, BEAS-2B cells were transfected with silencer RNA (siRNA) specific to Nrf2, exposed or not to DEPs (10 and 50 micro g/mL 1h and 2hs), and mRNA detected by RT-PCR and Western blotting for protein. Bafilomycin ( autophagy inhibitor) showed a significant decrease in the antioxidant markers Nrf2 (p=0.024), HO-1 (p = 0.002) and NQO1 (p = 0.003), whereas sulforaphane (Nrf2 activator) increased the expression levels of autophagic markers LC3B (p=0.004) and Atg5 (p=0.007). BEAS-2B exposed to DEP at a concentration of 50 micro g/mL for 2hs showed a significant increase in autophagic genes LC3B (p=0.018) and p62 (p=0.007),and in the antioxidant pathway markers Nrf2 (p=0.007) and NQO1 (p=0.025). There was a significant decrease in mRNA of the LC3B (p < 0.001), p62 (p=0.001) and Atg5 (p=0.024) in cells transfected with siRNA, exposed or not to DEP. Western blotting showed a reduction of Nrf2, p62 and LC3II proteins in BEAS-2B transfected with siRNA, indicating that Nrf2 silencedexposed to DEP modulated the expression of autophagy markers (R < 1). The results of this study show that, in bronchial cells exposed to DEP, the Nrf2 system and autophagy work together in order to try to maintain cellular homeostasis

No description available.

L’adaptation des cellules à leur environnement externe repose sur la transduction adéquate de signaux régulés par une pléthore d'événements moléculaires. Parmi ces événements moléculaires, les modifications post-traductionnelles (MPT) de protéines aident à intégrer, à traduire et à organiser de façon spatiotemporelle ces signaux pour que les cellules puissent réagir aux stimuli externes. Parmi les modifications post-traductionnelles, les petites protéines de la famille de l’Ubiquitine (Ublps, Ubiquitin-like proteins) jouent un rôle majeur dans presque toutes les voies de signalisation. Cette thèse rapporte des études fonctionnelles et structurales des interactions covalentes et non covalentes entre SUMO (Small Ubiquitin related MOdifier), un membre de la famille des Ublps, et trois protéines d'échafaudage, TIF1beta, le corépresseur universel des protéines KRAB-multidoigt de zinc, PIAS1, une ligase E3 pour SUMO et PML, un suppresseur de tumeur. La première étude rapporte l'identification et la caractérisation biochimique des sites de SUMOylation de TIF1beta. Nous avons déterminé que la modification covalente de six résidus lysine par SUMO est essentielle à l’activité de répression de la transcription induit par TIF1beta. En outre, nous présentons des évidences indiquant que la SUMOylation de TIF1 exige non seulement sa capacité à homo-oligomériser, mais est aussi positivement régulée par son interaction avec le domaine KRAB des protéines à doigts de zinc. Partant de ce constat, nous postulons que les protéines KRAB-multidoigt de zinc recrutent leur corépresseur TIF1betaà des gènes cibles, mais aussi accentuent son activité répressive grâce à l'augmentation de sa SUMOylation. Notre seconde étude révèle qu’en plus de réprimer la transcription en tant que MPT covalente, SUMO joue aussi un rôle important dans la répression en tant que partenaire non covalent d’interactions protéine-protéine. Nous avons montré que SUMO interagit simultanément avec deux enzymes de la machinerie de SUMOylation, l’unique enzyme de conjugaison E2, UBC9, et la ligase E3 PIAS1 au sein d’un complexe ternaire répresseur. En outre, nous révélons que la formation du complexe ternaire PIAS1:SUMO:UBC9 est modulée par le niveau de phosphorylation de résidus sérine juxtaposés à un motif d’interaction avec SUMO (SIM) dans PIAS1. Ainsi, SUMO agit comme un adaptateur spécifique qui stabilise les interactions UBC9 E2: E3 PIAS1. Partant de ce constat, nous proposons que les enzymes E2 et E3 des autres systèmes Ublps exploitent des mécanismes similaires dans le cadre de leur fonction Enfin, notre troisième étude explore la régulation des interactions non covalentes de SUMO par la phosphorylation. En utilisant une combinaison d'études in vivo et in vitro, nous démontrons que l'interaction entre SUMO1 et PML est régi par la phosphorylation dépendant de CK2 sur quatre résidus sérine de PML. Les structures cristallographiques des complexes PML-SIM:SUMO1 révèlent que les phospho-sérines de PML contactent des résidus de la région basique de SUMO1. Sachant que la kinase CK2 peut être induite par des kinases activables par le stress, ces résultats suggèrent que les interactions non-covalentes avec SUMO sont modulées par le stress cellulaire. Sur la base de cette constatation, nous postulons que des événements analogues affectent des protéines contenant des séquences SIM ciblées par CK2. En résumé, cette étude révèle qu’en plus de son rôle de MPT, SUMO peut fonctionner comme un adaptateur permettant des interactions spécifiques entre protéines tel que pour les enzymes E3 et E2. / Cell adaption to the external environment relies on proper signal transduction that is orchestrated by a plethora of molecular events. Among these molecular events, post-translational modifications (PTMs) of proteins help to spatiotemporally integrate, translate and dispatch signals so cells can respond to external stimuli. Among these post-translational modifications, the Ubiquitin-like proteins (Ublps) play a major role in almost all signaling pathways. This thesis reports functional and structural studies of the covalent and non-covalent interactions between the Small Ubiquitin-related MOdifier (SUMO), a member of the Ublps family, and three scaffold proteins, TIF1beta, the corepressor of KRAB-Multifinger proteins, PIAS1, a SUMO E3 ligase and the Promyleocytic leukemia (PML) tumor suppressor protein. The first study reports the identification and the biochemical characterization of TIF1betaSUMOylation sites. We mapped six SUMOylation sites in TIF1beta and determined that the covalent modification of these sites by SUMO is essential for its transcriptional repression activity. In addition, we present evidence indicating that SUMOylation of TIF1beta requires not only its ability to homo-oligomerize, but is positively regulated through its interaction with KRAB domains found in zinc-finger proteins. Based on this finding, we postulate that these KRAB domain containing multifinger proteins not only recruit TIF1beta co-repressor to target genes but also increase its repressive activity through enhancement of its SUMOylation. The work in the second study reveals that in addition to suppressing transcription as a covalent PTM, SUMO plays an important role in repression as a non-covalent protein-protein interaction partner. We determine that SUMO can form a repressive complex by simultaneously forming non-covalent interactions with UBC9 and PIAS1, the E2 and E3 enzymes in the SUMOylation system. In addition, we report that the formation of the PIAS1:SUMO:UBC9 ternary complex is modulated by the phosphorylation of serine residues juxtaposed to a SUMO-Interacting Motif (SIM) found in PIAS1. Thus SUMO acts as a specific adaptor that stabilizes UBC9 E2: PIAS1 E3 interactions. Based on this finding, we propose that the E2 and E3 enzymes from other Ublps systems exploit similar mechanisms as part of their function Finally, our third study explores the regulation of SUMO non-covalent interactions by phosphorylation. Using a combination of in vivo and in vitro studies we demonstrate that the interaction between SUMO1 and PML is governed by CK2-dependent phosphorylation of four serine residues in PML. Crystal structures of PML-SIM:SUMO1 complexes reveal that these PML phospho-serine specifically contact SUMO1 basic patch residues. Since CK2 kinase is induced by stress activated kinases pathways, this indicates that SUMO non-covalent interactions are regulated by cellular stress. Based on this finding, we postulated that analogous events influence other CK2-targeted SIM-containing proteins. In summary, this study reveals that in addition to its well described function as PTM, SUMO can function as an adaptor enabling specific proteins interactions such as functional E3:E2 enzymes pairs.

L’ oncoprotéine E6 - qui joue un rôle crucial dans le processus d’oncogenèse induit par les papillomavirus a longtemps résisté à toute analyse. Depuis 1995 l’équipe Oncoprotéines a concentré ses efforts sur cette problématique. Ce qui a permis la résolution par RMN de la structure du domaine C-terminal de E6 en 2006. C’est dans ce cadre que j’ai commencé ce Doctorat en 2008, avec objectif de continuer la quête de données structurales sur E6 tout en acquérant des informations sur ses modes d’interaction avec ses cibles cellulaires. Les travaux de cette thèse ont permis l’obtention de la structure cristallographique de E6 (HPV16) en complexe avec un peptide de E6AP, en utilisant une approche originale capable de produire des protéines E6 stables et solubles. Cette structure constitue la première information structurale publiée sur des protéines E6 entières, attendue depuis plus de 20 ans par la communauté scientifique. J’ai effectué également durant cette thèse une analyse du système d’interaction de la protéine E6 basée sur une large étude d’interaction entre les protéines E6 (7 types) et 93 peptides porteurs de motif LxxLL. / The oncoprotein E6 which plays a crucial role in the process of carcinogenesis induced by HPV, has withstood all tests for a long time. Since 1995 the team « oncoproteins » has focused on this issue. This allowed the resolution of structure of C-terminal domain of E6 by NMR analysis, in 2006. In this context, i started my PhD in 2008 with aim to continue the pursuit of structural data on E6 while also acquiring information about its modes of interaction with its cellular targets. The work of this thesis has enabled us to obtain the crystal structure of E6 (HPV16) in complex with a peptide of E6AP, using an original approach capable of producing stable and soluble proteins E6. This structure represents the first structural information on full-length E6, awaited for over 20 years by the scientific community. I also performed during this thesis an analysis of the interaction system of the E6 protein based on a large study of interaction between proteins E6 (7 types) and 93 peptides bearing LxxLL motif.

Gout is one form of inflammatory arthritis, which is caused by the precipitation of crystals of monosodium urate (MSU) in the joints. Acute gout is associated with sudden and painful inflammatory episodes characterized by high neutrophil infiltration. In spite of years of study gout treatment remains a challenge due to its relative ineficcacy. Thus, search for new and efficient therapies is necessary. The objective of this study was to investigate the involvement of glibenclamide in a model of acute gout in rats induced by MSU. MSU crystals produced nociception and edema when injected into the ankle joint of rats. Treatment with glibenclamide (3 mg/kg, s.c.) or dexamethasone (8 mg/kg, s.c., used as a positive control) decreased spontaneous nociception (67% ± 11 and 70 ± 7% inhibition, respectively) and edema (28 ± 7% and 77 ± 7% inhibition, respectively) induced 6 hours after MSU injection. The number of leukocyte infiltrates in the synovial fluid as well as the release of interleukin 1β (IL-1β) and prostaglandin E2 (PGE2) significantly increased at 6 hours after injection of MSU joint, but these effects were not reversed by treatment with glibenclamide (3 mg/kg, s.c.). In contrast, dexamethasone reduced the leukocyte infiltration and release of IL-1β and PGE2. To confirm if the dose of glibenclamide was able to block the KATP channels, we determined the levels of glucose in the blood of animals. Glibenclamide decreased (23 ± 2%) and dexamethasone increased the blood glucose of the rats compared to vehicle-treated animals / MSU. Therefoe, the effects of glibenclamide on nociception and edema induced MSU, suggests that this sulfonylurea may be an interesting option as an adjunct therapy in pain observed in acute attacks of gout. / A gota é uma forma de artrite inflamatória, causada pela precipitação de cristais de urato monossódico (MSU) nas articulações. A forma aguda de gota está associada a episódios inflamatórios súbitos e dolorosos caracterizados por uma grande infiltração de neutrófilos. Apesar dos anos de estudo sobre a gota, o seu tratamento ainda é um desafio pela relativa ineficácia dos fármacos disponíveis no mercado. Assim, a busca por novos agentes terapêuticos mais efetivos e seguros se faz necessário. Desta forma, o objetivo deste estudo foi investigar o possível potencial farmacológico da glibenclamida em um modelo de gota aguda induzida por MSU em ratos. Os cristais de MSU produziram nocicepção e edema quando injetados na articulação do tornozelo de ratos. O tratamento com glibenclamida (3 mg/kg, s.c.) ou dexametasona (8 mg/kg, s.c., usada como controle positivo) reduziu a nocicepção espontânea (67 ± 11% e 70 ± 7% de inibição, respectivamente) e o edema (28 ± 7% e 77 ± 7% de inibição, respectivamente) induzidos pelo MSU, 6 horas após a injeção do cristal. O número de leucócitos infiltrados no líquido sinovial, assim como a liberação de interleucina 1β (IL-1β) e de prostaglandina E2 (PGE2) foram consideravelmente aumentados, 6 horas após a injeção de MSU na articulação, porém esses efeitos não foram revertidos pelo tratamento com glibenclamida (3 mg/kg, s.c.). Em contrapartida, dexametasona reduziu a infiltração de leucócitos e a liberação de IL-1β e de PGE2. Para confirmar se a dose utilizada de glibenclamida foi capaz de bloquear os canais de KATP, foi avaliado os níveis de glicose no sangue dos animais. A glibenclamida reduziu (23 ± 2%) e a dexametasona aumentou a glicemia dos ratos quando comparado aos animais tratados com veículo /MSU. Assim, frente aos efeitos desempenhados pela glibenclamida sobre a nocicepção e edema induzidos pelo MSU, sugere-se que esta sulfonilureia possa ser uma opção interessante como um tratamento adjuvante na dor observada em ataques agudos de gota.

The fever response, besides being part of host defense response to infection or inflammation, is associated with discomfort and anxiety and may constitute a risk for febrile seizures in children. Therefore, antipyretic therapy is routinely prescribed for febrile patients. The animal models of fever using the systemic injection of lipopolysaccharide (LPS) and Baker yeast, described in the literature, are suitable for screening of novel antipyretics, but they do not provide information regarding the mechanism of action of these compounds. Therefore, the present study aimed to describe and validate a model of fever induction by prostaglandin (PG) E2, the final mediator of febrile response in the central nervous system, in young male Wistar rats (25-30 days of age). In this protocol, PGE2 was injected intrathecally without implantation of cannula. Rectal temperature (TR) was recorded every thirty minutes for three hours after PGE2 injection (08:00 11:00 h). The intrathecal (i.t.) injection of PGE2 10 ηg in 100 μL/animal induced fever in the animals, which was prevented by administration of EP1 and EP3 receptors antagonists, but did not by antagonist of EP4 receptor. In addition, the classic antipyretics dipyrone and acetaminophen, at doses that had no effect per se on TR of animals, did not revert the fever induced by i.t. injection of PGE2. This model seems suitable to investigate whether the action of antipyretics occurs upstream or downstream the prostaglandin coupling in EP receptors. In addition, this protocol is advantageous from the technical, ethical and economical point of view compared to others PGE2-induced fever protocols described in the literature, because trepanation for cannula implantation is not required, reducing the inflammatory response, animals suffering and experimental costs. / A febre, apesar de fazer parte da resposta de defesa do hospedeiro à infecção ou inflamação, está associada com desconforto e ansiedade, além de representar um risco iminente de convulsões febris em crianças. Por isso, terapia antipirética é rotineiramente prescrita a pacientes febris. Os modelos animais de febre empregando a injeção sistêmica de lipopolissacarídeo (LPS) e fermento de padeiro, descritos na literatura, são úteis para a triagem de novos antipiréticos, mas não fornecem informações a respeito do mecanismo de ação desses compostos. Diante disso, o presente estudo objetivou padronizar e validar um modelo de indução de febre por prostaglandina (PG) E2, o mediador final da resposta febril no sistema nervoso central, em ratos machos jovens da raça Wistar (25-30 dias). Neste protocolo, a PGE2 foi injetada pela via intratecal (i.t.), não necessitando a implantação de cânula. A temperatura retal (TR) foi registrada a cada trinta minutos durante três horas após a injeção da PGE2 (08:00-11:00 h). A injeção i.t. de PGE2 10 ηg em 100 μL/animal induziu febre nos animais, a qual foi prevenida pela administração de antagonistas dos receptores EP1 e EP3, mas não por antagonista do receptor EP4. Além disso, os antipiréticos clássicos dipirona e paracetamol, em doses que não tiveram efeito per se na TR dos animais, não reverteram a febre induzida por PGE2 i.t. Este modelo parece útil para investigar se a ação dos antipiréticos ocorre antes ou depois da ligação da PGE2 em seus receptores EP. Além disso, este protocolo é vantajoso do ponto de vista técnico, ético e econômico em relação aos outros protocolos de indução de febre por PGE2 descritos na literatura, porque a trepanação para implantação de cânula não é necessária, reduzindo a resposta inflamatória, o sofrimento dos animais e os custos experimentais.

Du fait de leur présence à la surface de la particule virale, les glycoprotéines d’enveloppe E1 et E2 du virus HCV jouent un rôle essentiel dans sa morphogenèse ainsi que lors de son entrée dans la cellule hôte. Jusqu’à récemment, les travaux de recherche sur les glycoprotéines d’enveloppe du virus HCV se sont essentiellement focalisés sur E2 car elle est la protéine d’attachement du virus. De plus, elle est la cible majeure des anticorps neutralisants et il a été longtemps postulé qu’elle était la protéine de fusion du virus. Cependant, les récentes publications de la structure de E2 ne mettent pas en évidence la présence d’un peptide de fusion et sa structure ne correspond pas aux critères attendus pour une protéine de fusion, suggérant que la glycoprotéine E1 seule ou en association avec E2 pourrait être responsable de l’étape de fusion. La structure de la région N-terminale de E1 (acides aminés 192 à 270) a récemment été résolue et a mis en évidence la présence d’une épingle à cheveux formée par 2 feuillets beta (β1 et β2) suivie par un segment de 16 acides aminés qui forme une hélice alpha (α1) flanquant 3 feuillets beta antiparallèles (β3, β4 et β5). En plus de la caractérisation de ces structures secondaires de E1, une région qui se situe au milieu de la protéine (approximativement entre les résidus 274 et 292) a été proposée avoir un rôle actif au cours du processus de fusion et elle pourrait correspondre à un peptide de fusion.Nous nous sommes basés sur ces travaux récents pour investiguer le rôle fonctionnel de la glycoprotéine E1 par une approche de mutagenèse dirigée des résidus conservés dans la région N-terminale et dans la région du potentiel peptide de fusion, dans le contexte d’un clone infectieux du HCV. Comme attendu, nos résultats indiquent que ces mutations introduites dans E1 n’ont aucun effet sur la réplication virale. Cependant, vingt-et-un parmi les vingt-huit mutants produits conduisent à une atténuation ou une perte de l’infectiosité virale. D’une manière très intéressante, deux mutants atténués, le T213A et le I262A, se sont montrés moins dépendants au co-récepteur claudine-1. D’autre part, nous avons montré que ces mutants utilisent un autre récepteur de la famille des claudines (claudine-6) pour l’entrée virale, indiquant ainsi un changement de dépendance à son co-récepteur claudine-1. A l’opposé, deux autres mutants, le L286A et le E303A, se sont révélés avoir une plus grande dépendance au co-récepteur claudin-1 pour l’entrée dans les cellules d’hépatome. Au cours de ce travail, nous avons également identifié une mutation intéressante à proximité du potentiel peptide de fusion. Cette mutation, G311A, conduit à la sécrétion de particules virales entières mais non infectieuses, suggérant un défaut d’entrée cellulaire pour ce virus. De façon très surprenante, nous avons également identifié une mutation (D263A) qui conduit à la sécrétion de particules virales dépourvues d’ARN génomique. Une caractérisation plus poussée de ce mutant a de plus révélé une modification dans la co-localisation subcellulaire entre l'ARN viral et la glycoprotéine E1, mettant en évidence pour la première fois un dialogue croisé entre E1 et l'ARN génomique du HCV lors de la morphogenèse du virus.En conclusion, nos observations permettent d’identifier précisément les régions spécifiques de la protéine E1 qui jouent un rôle dans l’assemblage et l’entrée du virus dans la cellule, mettant en évidence le rôle majeur de la glycoprotéine E1 au niveau des différentes étapes du cycle infectieux du HCV. / Being part of the viral particle, HCV envelope glycoproteins E1 and E2 play an essential role in virion morphogenesis as well as in HCV entry into liver cells. These glycoproteins form a non-covalent heterodimer, and until recently, research on HCV envelope glycoproteins has been mainly focused on E2. Indeed, this glycoprotein is the receptor-binding protein, it is also the major target of neutralizing antibodies and it was postulated to be the fusion protein. However, the recent publications of the structure of E2 do not show the presence of a fusion peptide and its structure does not fit with what one would expect for a fusion protein, suggesting that E1 alone or in association with E2 might be responsible for the fusion step. Concerning E1, only the crystal structure of the two-fifth N-terminal region, comprising amino acids 192 to 270, has been reported. This partial structure reveals a complex network of covalently linked, intertwined homodimers. The overall fold of the N-terminal E1 monomer consists of a beta-hairpin (β1 and β2) followed by a segment composed of a 16 amino-acid long alpha-helix (α1) flanking a three-strand antiparallel beta-sheet (β3, β4 and β5). In addition to the characterization of secondary structures within E1, a region located in the middle of the polypeptide (approximately between aa 274 and 292) has been suggested to play an active role during the fusion process and might potentially act as a fusion peptide. We took advantage of these recently published data to further investigate the functional role of HCV glycoprotein E1 by using a site-directed mutagenesis approach targeting conserved amino acids in the N-terminal region as well as in the region postulated to contain the fusion peptide in the context of an infectious clone. As expected, our results indicate that these mutations have no effect on virus replication. However, twenty-one out of twenty-eight mutations led to attenuation or inactivation of infectivity. Interestingly, two attenuated mutants, T213A and I262A, were less dependent on tight junction protein claudin-1, a co-receptor for HCV. Instead, these mutant viruses relied on another claudin (claudin-6) for cellular entry, indicating a shift in receptor dependence. In contrast, two other mutants, L286 and E303, were more dependent on claudin-1 for cellular entry into hepatoma cells cells. We also identified an interesting mutation downstream of the putative fusion peptide, G311A, which leads to the release of non-infectious particles having a defect in cellular entry. Finally, an unexpected phenotype was also observed for D263A mutant, which was no longer infectious but led to the secretion of viral particles devoid of genomic RNA. Further characterization of the D263A mutant revealed a change in subcellular co-localization between HCV RNA and E1, highlighting for the first time a crosstalk between HCV glycoprotein E1 and the genomic RNA during HCV morphogenesis.In conclusion, our observations allowed for the identification of specific regions in the E1 glycoprotein that play a role in virion assembly and entry, highlighting the major role played by this protein at different steps of the HCV infectious cycle.

Die Interaktion von RING-finger-Ubiquitin (Ub)-Ligasen (E3-Enzyme) mit Ub-konjugierenden Enzymen (E2-Enzyme) bestimmt wie schnell ein Zielprotein mit einer Ub-Modifikation versehen wird. In dieser Arbeit wird die Stimulation der E2-Enzyme Ubc6 und Ubc7 durch die E3-Enzyme Hrd1 und Doa10 untersucht. Es wird gezeigt, dass Ubc6~Ub-Konjugate bereitwilliger sogenannte "closed conformations" annehmen als Ubc7~Ub-Konjugate, was wiederum die Tendenz, Ub zu übertragen, steigert. Die katalytische Aktivität von Ubc7 kann durch RING-Domänen stimuliert werden. Durch einen allosterischen Mechanismus, der linchpin allostery, werden Ubc7~Ub-Intermediate in "closed conformations" gedrängt. Zusätzlich werden spezifische Kontakte zwischen RING-finger-Domänen und der Ub-Einheit in einem E2~Ub-Konjugat identifiziert. Diese schränken die Flexibilität des Konjugates weiter ein und begünstigen dadurch die Reaktivität des E2~Ub-Intermediates. Dieser Mechanismus scheint weit verbreitet zu sein und wurde schon bei anderen Ub-Ligasen beobachtet. Poly-Ub-Signale werden in mehreren Schritten generiert. In einer Priming genannten Reaktion wird die erste Ub-Einheit auf das Zielprotein übertragen. Dieser Vorgang erfordert sehr flexible Enzyme, die in diversem Umfeld Akzeptorstellen finden und mit Ub modifizieren. Die zweite Reaktion, die elongation, umfasst das schrittweise Anheften weiterer Ub-Moleküle an die erste Einheit. Im Gegensatz zum Priming, beruht die Bildung einheitlicher Ketten auf der wiederholten und robusten Konjugation von Ub-Molekülen in gleichbleibendem Milieu. Ub-Ligasen verwenden verschiedene Strategien, um die unterschiedlichen Herausforderungen dieser Reaktionen zu bewältigen. Während Doa10 je ein E2-Enzym pro Reaktion nutzt, kann Hrd1 ein einzelnes E2-Enzym durch linchpin allostery ausreichend stimulieren, um beide Prozesse durchzuführen, wie diese Arbeit zeigt. / The interaction of RING-finger ubiquitin (Ub) ligases (E3 enzymes) with Ub conjugating enzymes (E2 enzymes) dictates how fast a Ub modification is synthesized on a client protein. This thesis addresses the catalytic stimulation of the E2 enzymes Ubc6 and Ubc7 by their cognate E3 enzymes Hrd1 and Doa10. Results show that Ubc6~Ub conjugates adopt closed conformations more readily than Ubc7~Ub conjugates, indicative for an inherently higher propensity to transfer Ub. The catalytic activity of Ubc7 can be stimulated by a RING domain which relies on so-called linchpin allostery. This drives Ubc7~Ub intermediates into a closed conformation. In addition, specific contacts of the RING-finger domain and the Ub moiety in an E2~Ub conjugate were identified which further restrict the flexibility of the conjugate and thereby increase the reactivity of the E2~Ub intermediate. This seems to represent a common mechanism for the stimulation of E2 enzymes because similar contacts of RING-finger proteins with Ub have been observed for other Ub ligases. Poly-Ub signals on proteins are generated in successive steps. The first reaction, called "priming", comprises the attachment of an initial Ub moiety to the target. This requires high flexibility of the involved enzymes to modify acceptor sites in a versatile environment. The second step is the sequential addition of Ub to previously attached Ub molecules in a process termed elongation. In contrast to priming, the formation of uniform Ub chains relies on the repeated and robust conjugation of Ub moieties in a mostly invariant setting. Ub ligases employ different strategies to meet the divergent requirements of these reactions. Doa10 uses separate E2 enzymes for priming and elongation. This thesis shows that Hrd1 efficiently stimulates a single E2 enzyme for the catalysis of both steps via linchpin allostery.

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