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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
51

Structure determination and thermodynamic stabilization of an engineered protein-protein complex

Wahlberg, Elisabet January 2006 (has links)
The interaction between two 6 kDa proteins has been investigated. The studied complex of micromolar affinity (Kd) consists of the Z domain derived from staphylococcal protein A and the related protein ZSPA-1, belonging to a group of binding proteins denoted affibody molecules generated via combinatorial engineering of the Z domain. Affibody-target protein complexes are good model systems for structural and thermodynamic studies of protein-protein interactions. With the Z:ZSPA-1 pair as a starting point, we determined the solution structure of the complex and carried out a preliminary characterization of ZSPA-1. We found that the complex contains a rather large (ca. 1600 Å2) interaction interface with tight steric and polar/nonpolar complementarity. The structure of ZSPA-1 in the complex is well-ordered in a conformation that is very similar to that of the Z domain. However, the conformation of the free ZSPA-1 is best characterized by comparisons with protein molten globules. It shows a reduced secondary structure content, aggregation propensity, poor thermal stability, and binds the hydrophobic dye ANS. This molten globule state of ZSPA-1 is the native state in the absence of the Z domain, and the ordered state is only adopted following a stabilization that occurs upon binding. A more extensive characterization of ZSPA-1 suggested that the average topology of the Z domain is retained in the molten globule state but that it is represented by a multitude of conformations. Furthermore, the molten globule state is only marginally stable, and a significant fraction of ZSPA-1 exists in a completely unfolded state at room temperature. A complete thermodynamic characterization of the Z:ZSPA-1 pair suggests that the stabilization of the molten globule state to an ordered three helix structure in the complex is associated with a significant conformational entropy penalty that might influence the binding affinity negatively and result in an intermediate-affinity (µM) binding protein. This can be compared to a dissociation constant of 20-70 nM for the complex Z:Fc of IgG where Z uses the same binding surface as in Z:ZSPA-1. Structure analyses of Z in the free and bound state reveal an induced fit response upon complex formation with ZSPA-1 where a conformational change of several side chains in the binding surface increases the accessible surface area with almost 400 Å2 i.e. almost half of the total interaction surface in the complex. Two cysteine residues were introduced at specific positions in ZSPA-1 for five mutants in order to stabilize the conformation of ZSPA-1 by disulfide bridge formation. The mutants were thermodynamically characterized and the binding affinity of one mutant showed an improvement by more than a factor of ten. The improvement of the introduced cysteine bridge correlates with an increase in binding enthalpy rather than with entropy. Further analysis of the binding entropy suggests that the conformational entropy change in fact is reduced but its favorable contribution is opposed by a less favorable desolvation enthalpy change. These studies illustrate the structural and thermodynamic complexity of protein-protein interactions, but also that this complexity can be dissected and understood. In this study, a comprehensive characterization of the ZSPA-1 affibody has gained insight into the intricate mechanisms involved in complex formation. These theories were supported by the design of a ZSPA-1 mutant with improved binding affinity. / QC 20100924
52

Etude des interactions entre polyélectrolytes de charges opposées par électrophorèse capillaire et titration calorimétrique isotherme / Study of interactions between oppositely charged polyelectrolytes by capillary electrophoresis and isothermal titration calorimetry

Lounis, Feriel Meriem 14 December 2016 (has links)
L’objectif de cette thèse est d’étudier les interactions entre polyélectrolytes (PE) de charges opposées par analyse frontale continue en électrophorèse capillaire (FACCE) et par titration calorimétrique isotherme (ITC), en fonction de la force ionique du milieu et des paramètres physico-chimiques relatifs aux deux partenaires (taux de charge chimique, masse molaire, ramification). Un copolymère statistique d’acrylamide et de 2-acrylamido-2-méthyl-propane sulfonate (PAMAMPS) de taux de charge variant entre 15% et 100% a été synthétisé et caractérisé pour cette étude. En tant que polycation modèle, la poly(L-lysine) a été retenue, sous sa forme linéaire (PLL) ou ramifiée / hyperbranchée (DGL). Des mesures par turbidimétrie ont permis d’étudier la stabilité des complexes de polyélectrolytes (PEC) en fonction de la force ionique du milieu. La détermination de la stœchiométrie des PEC par 1H-RMN a permis d’établir une règle générale pour prédire les stœchiométries de charge des PEC. Les paramètres thermodynamiques d’interactions (constantes et stœchiométries d’interaction, contribution entropique et enthalpique) ont été déterminés, par le tracé systématique des isothermes d’adsorption, en considérant le modèle d’interactions des sites indépendants de même énergie. Une dépendance linéaire entre le logarithme des constantes d’interactions et le logarithme de la force ionique a été observée. Cette dépendance en force ionique confirme le caractère entropique des interactions entre PE de charges opposées. Elle permet aussi de quantifier le nombre de contre-ions relargués lors de la formation du PEC. Cette quantité de contre-ions libérés a pu être comparée à la quantité totale de contre-ions condensés. Cette modélisation permet, en outre, de prédire les constantes d’interaction pour des taux de charge intermédiaires et à différentes forces ioniques. / The aim of this thesis is to study the interactions between oppositely charged polyelectrolytes (PE) by frontal analysis continuous capillary electrophoresis (FACCE) and isothermal titration calorimetry (ITC) as a function of the ionic strength of the medium and the physico-chemical properties related to the two partners (chemical charge density, molar mass, ramification). Statistical copolymers of acrylamide and 2-acrylamido-2-methyl-propane sulfonate (PAMAMPS) with chemical charge densities varying between 15% and 100% were synthesized and characterized for this study. Poly(L-lysine) under their linear (PLL) or ramified/hyperbranched (DGL) forms were used as model polycations. Turbidity measurements allowed the study of the stability of the polyelectrolyte complexes (PEC) as a function of the ionic strength of the medium. PEC charge stoichiometries were measured by 1H-NMR, and a general predictive rule that estimates the PEC charge stoichiometry was enounced. The thermodynamic binding parameters (binding constant, stoichiometry, enthalpic and entropic contributions) were determined, by systematically plotting the isotherms of adsorption, and using the model of independent and identical interacting sites. A linear dependence between the logarithm of the binding constants and the logarithm of the ionic strength was observed. This linear dependence confirmed the entropic character of the interactions between oppositely charged PE and allowed quantifying the number of released counter-ions that were compared to the total number of condensed counter-ions. Furthermore, this modelling allowed predicting the binding constants for intermediate chemical charge densities and at different ionic strengths.
53

Caracterização e interação do domínio C-terminal da chaperona Hsp90 humana e das co-chaperonas Tom 70 e Hop / Characterization and interaction of the C-terminal domain of the human chaperone Hsp90 and co-chaperones Tom 70 and Hop

Gava, Lisandra Marques, 1982- 18 August 2018 (has links)
Orientador: Carlos Henrique Inácio Ramos / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-18T21:37:15Z (GMT). No. of bitstreams: 1 Gava_LisandraMarques_D.pdf: 9573403 bytes, checksum: 4d69a29d08ffc20e4544b876f131fb0d (MD5) Previous issue date: 2011 / Resumo: A função biológica das proteínas está relacionada à sua estrutura tridimensional adquirida pelo processo de enovelamento protéico. Neste contexto, proteínas denominadas, genericamente, de chaperonas moleculares exercem papel fundamental atuando no auxílio do enovelamento correto, no reenovelamento e na dissociação de agregados protéicos. A Hsp90 é uma das chaperonas moleculares mais importantes, é essencial para a viabilidade celular em eucariotos e está normalmente associada a proteínas atuantes no ciclo e sinalização celular, o que torna essa chaperona um alvo bastante interessante para abordagens terapêuticas de diversas doenças. A Hsp90 pode ser modulada por co-chaperonas diversas. Nesse trabalho foram caracterizadas as proteínas CHsp90 (domínio C-terminal da Hsp90 humana), e as co-chaperonas Hop e Tom70, além da interação entre C-Hsp90 e Tom70. Foram aplicadas técnicas de dicroísmo circular e emissão de fluorescência do triptofano; seguidas pela caracterização por ultracentrifugação analítica, gel filtração analítica, espalhamento dinâmico de luz, cromatografia de gel filtração acoplada a espalhamento de luz em multi-ângulos (SEC-MALS) e gel nativo. Para os ensaios de interação foram aplicadas técnicas de pull-down, SEC-MALS e calorimetria de titulação isotérmica. As proteínas foram produzidas puras e enoveladas, com estado oligomérico determinado como dímero para C-Hsp90 e monômero para Hop e Tom70, sendo que essas também foram encontradas como espécies diméricas. A estequiometria de interação entre a C-Hsp90 e Tom70 foi determinada em 1 monômero da Tom70 para 1 dímero da C-Hsp90, com KD de 360 ± 30 nM, ?Happ = -2,6 ± 0,1 kcal/mol e ?S = 21 ± 1 cal/mol.K, sugerindo que a interação é dirigida por entalpia e entropia. Os resultados obtidos nesse trabalho contribuem para uma melhor compreensão do sistema Hsp90, que está envolvido em diversos processos celulares essenciais e patológicos, como doenças neurodegenerativas, processos inflamatórios, infecções e câncer / Abstract: The biological function of proteins is related to its three dimensional structure acquired via protein folding process. In this context, the molecular chaperones play a key role acting as auxiliary protein on protein folding, refolding and dissociation of protein aggregates. Hsp90 is one of the most important molecular chaperones, is essential for cell viability in eukaryotes and is usually associated with proteins involved in cell cycling and cell signaling, which makes these chaperone a very interesting targeting for therapeutic approaches for several diseases. The chaperone activity of Hsp90 can be modulated by other proteins, called co-chaperones. In this work, we characterized the protein C-Hsp90 (Cterminal domain of human Hsp90) and the co-chaperones Hop and Tom70, and also the interaction between C-Hsp90 and Tom70. Circular dichroism and fluorescence emission of tryptophan was first applied for initial characterization of the proteins, followed by analytical ultracentrifugation, analytical gel filtration, dynamic light scattering, size exclusion chromatography - multi angle light scattering (SEC-MALS) and native gel. The interaction between C-Hsp90 and Tom70 were measured by techniques like pull-down, SEC-MALS and isothermal titration calorimetry. The proteins were produced pure and soluble and their oligomeric state were determined as dimer for C-Hsp90, and monomer for Hop and Tom70, these two co-chaperones were also found as dimeric species. The stoichiometry of interaction between C-Hsp90 and Tom70 was determined by SEC-MALS and ITC as been 1 dimer of C-Hsp90 to 1 monomer of Tom70, with a KD of 360 ± 30 nM, ?Happ = -2.6 ± 0.1 kcal/mol and ?S = 21 ± 1 cal/mol.K, suggesting that these interaction is driven by both, enthalpy and entropy. The results contribute to a better understanding of the important Hsp90 machinery, which is involved in many essential cellular and pathological processes, such as neurodegenerative diseases, inflammation, infection and cancer / Doutorado / Bioquimica / Doutor em Biologia Funcional e Molecular
54

Charakterizace vybraných polyelektrolytových komplexů metodami strukturní a termické analýzy / Characterization of polyelectrolyte complexes using structural and thermal analysis

Řiháčková, Barbora January 2016 (has links)
This master thesis deals with study of chitosan-lignohumate, chitosan-polystyrenesulfonate, chitosan-alginate and chitosan-carrageenan polyelectrolyte complexes. The work was motivated by research of finding suitable alternative substance for lignohumate. The molecular weights of substances were characterized using SEC-MALLS. A degree and a character of the interactions between polyelectrolyte were studied by isothermal titration calorimetry and dynamic light scattering method. The calorimetric experiments proved that decreasing concentration of samples causes decreasing of heat flow. The best calorimetric measurements were provided by adding chitosan into polymer solution. The interactions between chitosan and polyanions and influence of mixing order were proved also by measuring intensity of zeta potential, Z-average of particle size and turbidity. New chitosan-based materials have a big potential in agriculture and medicine.
55

Development of Non-Amorphous Solid Dispersions for Poorly-Soluble Drugs Using a Novel Excipient and Hot Melt Extrusion

Hwee Jing Ong (5930108) 16 January 2020 (has links)
<div>Drug solubility is a persistent challenge in pharmaceutical product development. The objective of this research is to develop a formulation/processing strategy by means of a biodendrimeric solid dispersion (BDSD) platform, for increasing the solubility and dissolution rate of poorly water-soluble drugs. The BSDS platform combines a novel type of excipient, referred to as DLB, with a new application of the hot melt extrusion (HME) process.</div><div><br></div><div>Four model compounds – phenytoin (PHT), griseofulvin (GSF), ibuprofen (IBU), and loratadine (LOR) – were used to evaluate the solubilization effect of an octenylsuccinate-modified dendrimer-like biopolymer (OS-DLB). Shake-flask solubility measurements show that OS-DLB exerts significant solubilizing effect when present at less than 0.2% in water. The presence of hydrophobic C<sub>8</sub> chains on OS-DLB creates the type of favorable nonpolar microenvironment necessary for producing a parallel liquid phase equilibrium responsible for the increase in the total amount of drug dissolved in aqueous media. The higher the hydrophobicity of the drug, the higher the observed solubilization effect. Isothermal titration calorimetry studies show that drug solubilization by OS-DLB occurs by means of entropy-driven interactions. These studies also show that the intermolecular interaction between IBU and OS-DLB in solution exhibits very small energy change upon mixing but a stronger effect on entropy. In comparison, the intermolecular interaction between the less hydrophobic GSF and OS-DLB have significant effects on both enthalpy and entropy. Consequently, in terms of solubilization enhancement, it was found that the interaction between IBU and OS-DLB is entropy-driven (more favorable), while in the case of GSF, the interacting molecules are arranged to maximize enthalpic interaction.</div><div><br></div><div>Based on the solubility studies, a formulation/processing approach for enhancing the dissolution rate of the model drugs was developed. The biopolymer serving as both carrier and solubilizing agent, was coprocessed with poloxamer, functioning as a processing aid, using hot melt extrusion (HME) as an enabling technology. The result is a non-amorphous solid dispersion, exhibiting high and long-lasting supersaturation upon dissolution. A 3-factor, 3-level Box-Behnken design was implemented to define the optimal design space for the formulation/extrusion process. The results obtained from multivariate data analysis (partial least squares and principal components analysis) and response surface modeling suggest that drug release performance of IBU BDSDs is strongly influenced by the processing variables, while maximum release of GSF from the BDSDs can be attained through selective combination of functional excipients.<br></div>
56

Protein interaction with polyelectrolytes and ligands: A structural and thermodynamic investigation

Yu, Shun 29 August 2017 (has links)
Der erste Teil dieser Arbeit untersucht die Ladungswechselwirkung zwischen Proteinen und Polyelektrolyten. Dabei wird die Bindung von Polyakrylsäure (PAA) als kurzes Modell-Polyelektrolyt an Humanalbumin (HSA) in einer umfassenden experimentellen und theoretischen Studie untersucht und sehr gute Übereinstimmung der Resultate konnte festgestellt werden. Die Computersimulationen in dieser Arbeit wurden von Xiao Xu im Rahmen seiner Promotion durchgeführt. Thermodynamische Daten wurden mit Hilfe von Isothermer Titrationskalorimetrie (ITC) gesammelt und strukturelle Untersuchungen wurden mit Hilfe von Neutronenkleinwinkelstreuung (SANS) durchgeführt. Die Analyse von Bindungsaffinitäten zeigte eine eins zu eins Bindung von PAA mit HSA, die entropisch getrieben ist und strukturellen Untersuchungen weisen eine stabile Proteilstruktur unabhängig von der Adsorption durch PAA auf. Im zweiten Teil der Arbeit wird die Wechselwirkung zweier uremischer Toxinen, nämlich Phenylessigsäure (PhAA) und Indoxylsulfat (IDS), mit HSA untersucht. Eine wichtige Schlussfolgerung aus der Analyse der ITC Daten ist, dass begünstigende, hydrophobe Wechselwirkungen die treibende Kraft für die Adsorption von Toxinen an HSA sind, und dass hierbei die Enthalpie-Entropie-Kompensation (EEC) zu tragen kommt. Weiterhin zeigen SANS Untersuchungen, dass die Proteinstruktur trotz Adsorption stabil bleibt und konnte außerdem über Interpartikulare Wechselwirkung von HSA-Toxin Komplexen aufklären. Im Allgemeinen ist HSA strukturell unverändert durch die Adsorption von Liganden. Diese Feststellung erlaubt die Interpretation von ITC Daten, da damit gemessene Wärmeprozesse ausschließlich von Bindungsprozessen herrühren. Die vorliegende Arbeit konnte zeigen, dass eine ausführliche thermodynamische Analyse durch Kombination von theoretischer mit experimenteller Arbeit, eine umfassende Einsicht in die Mechanismen von Bindungsprozessen ermöglicht. / The first part of the thesis explores the charge-charge interaction between proteins and polyelectrolytes. Polyacrylic acid (PAA) is used as a short model polyelectrolyte to interact with human serum albumin (HSA) the most abundand protein in blood, in a comprehensive experimental and theoretical study. The results thereby coincide very well. Computer simulation studies were performed by Xiao Xu within the framework of his PhD thesis. Thermodynamic data were collected by means of isothermal titration calorimetry (ITC) and structural analysis performed using small-angle neutron scattering (SANS). The analysis of binding free energies revealed one to one binding that is mainly driven by entropy. Structural investigations give proof of the stability of the protein beside adsorption. In the second part, the interaction of two uremic toxins, namely phenylacetic acid (PhAA) and indoxyl sulfate (IDS), with HSA is studied. Systematic ITC experiments reveal two binding sites for both of the two toxins and show small dependence of binding affinities on ionic strength in contrast to PAA adsorption to HSA. This leads to the key conclusion that the favorable hydrophobic interaction is the driving contribution for adsorption and enthalpy-entropy compensation (EEC) effect comes into play. SANS studies of high concentrated HSA-toxin solutions proofed the stability of the protein structure and shed light on the interparticle interaction of HSA-toxin complexes. In general, HSA is structurally robust regardless of ligand uptake. This finding allows the interpretation of ITC data by confirming that the measured heat signals are purely associated to the binding process. The present thesis has demonstrated that a full thermodynamic analysis in combination with theoretical modelling can provide a comprehensive understanding of binding in terms of identifying driving forces and their contributions to protein ligand interaction.
57

Interakce hyaluronan-aminokyseliny / Hyaluronan-amino acids interactions

Jugl, Adam Unknown Date (has links)
The presented dissertation focuses on non-covalent interactions of hyaluronan of different molecular weights (9–1540 kDa) with basic (oligo)-amino acids (especially arginine) and the antimicrobial peptide cecropin B. High-resolution ultrasonic spectroscopy (HR-US), isothermal titration calorimetry (ITC) and potentiometric titration techniques were chosen to investigate the interactions. The thesis focuses on the characterization of interactions, especially with respect to the used molecular weight of interacting polymers and the ionic strength of the environment. Whether interactions occur or not was determined primarily by the length of the arginine oligomer chain. For monomeric amino acids, the interactions were investigated mainly by potentiometric titrations. Interactions were observable from arginine oligomers with eight monomer units. The molecular weight of hyaluronan mainly affected the intensity of the interactions. The transition between the individual conformations of hyaluronan (rod and random coil) was especially significant. Investigation of interactions was performed in water, in solutions with different concentrations of sodium chloride and in PBS. The sufficiently high ionic strength of the solution was able to suppress the interactions in water between the oligomers of arginine and hyaluronan. The basic antimicrobial peptide cecropin B has been shown to interact with hyaluronan in water but not in PBS. Based on these results, it was possible to conclude that the hyaluronan-cecropin B system would be particularly suitable for topical applications.
58

Structural Characterization of β-Lactoglobulin in Sodium Dodecyl Sulfate and Lauryldimethylamine Oxide

Thompson, Kayla Dawn 10 November 2020 (has links)
No description available.
59

Caractérisation structurale et fonctionnelle des interactions impliquant TFIIH et la machinerie de réparation de l’ADN

Lafrance-Vanasse, Julien 09 1900 (has links)
La réparation de l’ADN par excision des nucléotides (NER) est un mécanisme capable de retirer une large variété de lésions causant une distorsion de la double hélice, comme celles causées par les rayons ultraviolets (UV). Comme toutes les voies de réparation de l’ADN, la NER contribue à la prévention de la carcinogénèse en prévenant la mutation de l’ADN. Lors de ce processus, il y a d’abord reconnaissance de la lésion par la protéine XPC/Rad4 (humain/levure) qui recrute ensuite TFIIH. Ce complexe déroule l’ADN par son activité hélicase et recrute l’endonucléase XPG/Rad2 ainsi que d’autres protéines nécessaires à l’excision de l’ADN. Lors de son arrivée au site de lésion, XPG/Rad2 déplace XPC/Rad4. TFIIH agit également lors de la transcription de l’ADN, entre autres par son activité hélicase. Outre cette similarité de la présence de TFIIH lors de la transcription et la réparation, il est possible de se demander en quoi les deux voies sont similaires. Nous nous sommes donc intéressés aux interactions impliquant TFIIH et la machinerie de réparation de l’ADN. Nous avons donc entrepris une caractérisation structurale et fonctionnelle de ces interactions. Nous avons découvert que Rad2 et Rad4 possèdent un motif d’interaction en nous basant sur d’autres interactions de la sous-unité Tfb1 de TFIIH. Par calorimétrie à titrage isotherme, nous avons observé que les segments de ces deux protéines contenant ce motif interagissent avec une grande affinité au domaine PH de Tfb1. Le site de liaison de ces segments sur Tfb1PH est très semblable au site de liaison du domaine de transactivation de p53 et au domaine carboxy-terminal de TFIIEα avec Tfb1PH, tel que démontré par résonance magnétique nucléaire (RMN). De plus, tous ces segments peuvent faire compétition les uns aux autres pour la liaison à Tfb1PH. Nous avons aussi démontré in vivo chez la levure qu’une délétion de Tfb1PH crée une sensibilité aux radiations UV. De plus, la délétion de multiples segments de Rad2 et Rad4, dont les segments d’interaction à Tfb1PH, est nécessaire pour voir une sensibilité aux rayons UV. Ainsi, de multiples interactions sont impliquées dans la liaison de Rad2 et Rad4 à TFIIH. Finalement, les structures des complexes Rad2-Tfb1PH et Rad4-Tfb1PH ont été résolues par RMN. Ces structures sont identiques entre elles et impliquent des résidus hydrophobes interagissant avec des cavités peu profondes de Tfb1PH. Ces structures sont très semblables à la structure de TFIIEα-p62PH. Ces découvertes fournissent ainsi un lien important entre la transcription et la réparation de l’ADN. De plus, elles permettent d’émettre un modèle du mécanisme de déplacement de XPC/Rad4 par XPG/Rad2 au site de dommage à l’ADN. Ces connaissances aident à mieux comprendre les mécanismes de maintient de la stabilité génomique et peuvent ainsi mener à développer de nouvelles thérapies contre le cancer. / The nucleotide excision repair pathway (NER) is a mechanism capable of removing a wide variety of helix-distorting lesions, such as those caused by ultraviolet irradiation (UV). As all DNA repair pathways, NER contributes to the prevention of carcinogenesis by preventing DNA mutation. During this process, the lesion is first recognized by the protein XPC/Rad4 (human/yeast), which then recruits TFIIH. This complex unwinds the DNA with its helicase activity and then recruits the endonuclease XPG/Rad2 and other proteins necessary for DNA excision. Upon arrival at the lesion site, XPG/Rad2 displaces XPC/Rad4. TFIIH also acts in DNA transcription, using its helicase activity. In addition to the similarity of the presence of TFIIH in transcription and DNA repair, it is possible to ask ourselves how the two pathways are similar. We were interested in the interactions involving TFIIH and the DNA repair machinery. We have therefore undertaken a structural and functional characterization of these interactions. We have found that Rad2 and Rad4 have a motif of interaction based on other interactions of the Tfb1 subunit of TFIIH. Using isothermal titration calorimetry, we found that segments of these two proteins containing this motif interact with high affinity to the PH domain of Tfb1. The binding site of these segments is very similar to Tfb1PH binding site of transactivation domain of p53 and the carboxyl-terminal domain of TFIIEα with Tfb1PH, as demonstrated by nuclear magnetic resonance (NMR). In addition, these segments can compete with each other for binding to Tfb1PH. We also demonstrated in vivo that deletion of Tfb1PH in yeast creates a sensitivity to UV irradiation. In addition, the deletion of multiple segments of Rad2 and Rad4, including segments of interaction Tfb1PH, is required to observe a sensitivity to UV. Thus, multiple interactions are involved in the binding of TFIIH to Rad2 and Rad4. Finally, the structures of the Rad2-Tfb1PH and Rad4-Tfb1PH complexes were solved by NMR. These structures are identical to each other and involve hydrophobic residues interacting with shallow grooves on Tfb1PH. These structures are very similar to the structure of TFIIEα-p62PH. These findings provide an important mechanistic link between transcription and DNA repair. In addition, they provide a model of the mechanism of the displacement of XPC/Rad4 by XPG/Rad2 at the damaged site. This knowledge helps to better understand the mechanisms of genomic stability and can lead to novel cancer therapies.
60

Étude moléculaire in vitro du mode d'action de peptides bioactifs issus de protéines de lait bovin : peptides inhibiteurs de l'enzyme de conversion de l'angiotensine I et caseinophosphopeptides chélateurs de minéraux / In vitro molecular study of the action mode of bioactive peptides from bovine milk proteins : angiotensin I-converting enzyme inhibitory peptides and mineral-chelating caseinophosphopeptides

Zidane, Faïza 10 December 2012 (has links)
Les protéines du lait bovin sont la source la plus importante en peptides bioactifs qui permettraient de maintenir le capital-Santé du consommateur. Nous nous sommes intéressés aux peptides inhibiteurs de l'enzyme de conversion de l'angiotensine I (ECA) et aux caséinophosphopeptides (CPP) chélateurs de minéraux pour étudier in vitro leur mécanisme d'interaction avec leurs cibles moléculaires. En effet, les peptides d'origine alimentaire, inhibiteurs de l'ECA (IEC) contribueraient à une prévention de l'hypertension. Pour comprendre la relation entre la séquence de ces peptides et leur pouvoir IEC, les paramètres d'inhibition de l'ECA somatique de poumon de lapin, qui possède 2 domaines N et C ayant chacun un site actif, par des peptides (FALPQYLK, FALPQY, ALPMHIR, IPP et VPP) issus de protéines du lait et des peptides dérivés ont été étudiés. De plus, l'interaction entre certains de ces peptides avec l'ECA somatique humaine a été caractérisée par la technologie Biacore®. La cartographie des sites de liaison de FALPQY en compétition avec le captopril (inhibiteur compétitif des 2 sites actifs de l'ECA) et le peptide BPP-11b (inhibiteur sélectif du domaine C de l'ECA) montre que ce peptide se fixe au niveau des 2 sites actifs de l'ECA. Par ailleurs, les CPP sont un bon moyen de corriger les carences minérales car ils sont capables de former des complexes solubles avec les cations, améliorant ainsi leur biodisponibilité. L'interaction entre le CPP [bêta]-CN (f1-25)4P et Ca2+, Mg2+, Zn2+ et Cu2+ a été étudiée par microcalorimétrie de titration isotherme : 1 mole de CPP fixe 2 moles de Ca2+, de Mg2+ ou de Zn2+ à pH 8, avec des constantes d'affinité faibles, mais ne fixe pas Cu2+ / Bovine milk proteins are the most important source of bioactive peptides. These peptides may contribute to maintain optimal health state. In the current study, we attempted to elucidate in vitro the molecular interaction mode between both angiotensin I-Converting enzyme (ACE) inhibitory peptides and mineral-Chelating caseinophosphopeptides (CPP). Indeed, ACE inhibitory peptides from food may provide a natural and safe alternative to prevent hypertension. In order to better understand the relationship between the sequence of ACE inhibitory peptides and their inhibitory potency, the inhibition parameters of rabbit lung somatic ACE (that possesses 2 domains, N and C, which are both catalytically active) by bovine milk peptides (FALPQYLK, FALPQY, ALPMHIR, IPP, and VPP) and other peptides with related sequence were investigated. Moreover, the interaction between some peptides and their derivatives with human somatic ACE was analyzed by Biacore® technology. The mapping of FALPQY-ACE interaction sites in competition with captopril (a competitive inhibitor for both sites) and also with BPP-11b (a selective inhibitor of the C-Domain active site) showed that FALPQY binds at or near the two active sites located on the 2 domains of ACE. In addition, CPP efficiently bind cations of nutritional interest by forming soluble complexes which prevent the precipitation of minerals at alkaline pH and increasing thus their bioavailability. The interaction between [beta]-CN (f1-25)4P, and Ca2+, Mg2+, Zn2+, and Cu2+ cations, was characterized by isothermal titration calorimetry: 1 mole of [beta]-CN (f1-25)4P binds 2 moles of Ca2+, Mg2+, and Zn2+ at a pH 8, with a low affinity, but does not bind Cu2+ cation

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