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Análise da via de regulação gênica por ácido retinóico: uma abordagem por bioinformática e biologia estrutural / Analysis of retinoic acid pathway: an approach by bioinformatics and structural biology.Sobreira, Tiago José Paschoal 11 December 2008 (has links)
As vias de sinalização celular por meio de moléculas são um dos principais meios de controle funcional de um organismo. O entendimento das funções de moléculas sinalizadoras facilita a compreensão das vias metabólicas de um organismo, assim possibilitando uma melhor compreensão de vários eventos biológicos e também de várias doenças. A sinalização pelo ácido retinóico (AR), e seus derivados, é responsável pelo controle de várias funções, por exemplo: crescimento celular, diferenciação celular, formação da retina, desenvolvimento cardíaco e também relacionado a várias patologias como diabetes, obesidades, cânceres, e doenças cardiovasculares. A ação do ácido retinóico é controlada em dois níveis: no metabolismo de síntese/degradação e na sua utilização na sinalização para a expressão gênica. A maquinaria que controla o metabolismo inclui as enzimas de síntese do AR (aldeído desidrogenase ALDH) e as enzimas de degradação do AR (Cyp26), que controlam a distribuição espaço-temporal do AR durante a embriogênese. As ALDHs são enzimas NAD(P)+ dependentes, que oxidam uma ampla gama de aldeídos para os seus correspondentes ácidos carboxílicos, sendo ALDH1A2 a principal enzima na transformação de retinal em ácido retinóico. A maquinaria da sinalização celular por AR contém os receptores nucleares controlados por AR (RARs) que estão envolvidos com o controle da transcrição gênica. Os mecanismos de controle de expressão mais comuns são os que ocorrem na fase transcricional. Um desses mecanismos envolve proteínas que se ligam às regiões promotoras de transcrição, representadas por trechos de DNA que geralmente estão localizados próximo à região de início da transcrição, mas que também podem estar a centenas ou até milhares de pares de bases desse início. Essas proteínas modulam a maquinaria transcricional, podendo ativá-la ou inibi-la. A associação de várias técnicas como a biologia molecular, bioinformática, filogenia, análises estruturais de biomoléculas, mecânica molecular e métodos termodinâmicos tem se mostrado uma poderosa abordagem para compreensão de sistemas biológicos simplificando e agilizando o desenvolvimento do conhecimento científico. Nessa direção, esse estudo desenvolveu duas análises: a primeira estudando a evolução das funções das enzimas ALDH, utilizando-se de técnicas de genômica combinatória, filogenia, bioinformática, estrutura de biomoléculas e de biologia do desenvolvimento, tentando compreender o modo como as ALDHs, que apresentam as seqüências de aminoácidos bastante similares, puderam divergir para gerar funções diversas como a destoxificação e a sinalização. Para este estudo foram analisados os genomas de 487 organismos em busca de seqüências de ALDHs e também o genoma do organismo modelo Branchiostoma floridae. Foram obtidas 190 seqüências que foram utilizadas em uma análise filogenética para tentar compreender a função primordial e também para definir grupos de aminoácidos candidatos a marcadores das diferentes famílias de ALDHs. Essas 190 seqüências também foram modeladas estruturalmente e analisada a forma e o volume do canal onde se aloja o aldeído a ser oxidado. A partir dessas informações foi possível prever que as ALDHs passaram das funções ancestrais de controle do padrão corporal para algo mais abrangente como funções protetoras. A segunda análise, utilizando-se das estruturas tridimensionais dos fatores de transcrição ligados ao DNA em diferentes posições e submetendo esses complexos a processos de mecânica molecular, cálculos termodinâmicos e análises das ligações de hidrogênio para tentar prever os mais prováveis sítios de interação entre os receptores e o DNA. O modelo escolhido para essa análise foram os fatores de transcrição regulados por ácido retinóico o RAR e RXR utilizando a região promotora do gene RARE-2 para avaliar as mais prováveis regiões de ligação desses fatores. Para esse estudo foram construídos 71 complexos proteína-DNA que foram submetidos a processos de mecânica molecular e cálculos termodinâmicos. A partir dessas informações foi possível prever uma região de maior afinidade entre o fator de transcrição e o DNA. As análises de ligações de hidrogênio possibilitaram definir exatamente a região de interação entre os fatores de transcrição e o DNA, e também descrever as interações moleculares responsáveis pela especificidade da interação. / Cellular signaling paths through molecules are one of the main processes of functional control of an organism. The comprehension of signaling molecules functions enables one to understand the metabolic pathways of an organism, along with related biological events and several diseases. The signaling through retinoic acid (RA) and its secondary products is responsible for controlling several functions, such as cellular growth and differentiation, retinas formation and cardio development, and is also related to several pathologies such as diabetes, obesity, cancers and cardiovascular disorders. There are two levels of control of retinoic acid activity: synthesis/degradation metabolism and its use in gene expression signaling. The machinery that controls the metabolism includes RAs synthesis (aldehyde dehydrogenase ALDH) and degradation (Cyp26) enzymes, which control the space-temporal distribution of RA during the embryogenesis. The ALDHs are NAD(P)+ dependent enzymes that oxidize many types of aldehydes into the related carboxylic acids, being the ALDH1A2 the main enzyme involved in the process of transformation of retinal into retinoic acid. The machinery of cellular signaling through RA contains the nuclear receptors controlled by RA (RARs) that are involved in the control of gene transcription. The most common mechanisms of expression control are the ones that occur during the transcriptional phase. One of these mechanisms involves proteins that bind to the transcription promoter regions, represented by DNA sequences that are usually located close to the region where the transcription starts, but can also be hundreds or thousands of base pairs apart from the starting point. These proteins modulate the transcriptional machinery, being responsible for both its activation and inhibition. The association of several techniques as molecular biology, bioinformatics, phylogeny, structural analysis of biomolecules, molecular mechanics and thermodynamic methods has been shown as a powerful tool for the understanding of biological systems, simplifying and speeding up the production of related scientific knowledge. Facing this direction, the present study developed two analyses. The first one studied the evolution of ALDH enzymes functions, using the techniques of combinatory genomic, phylogeny, bioinformatics, structure of biomolecules and developmental biology, in the attempt of understanding how the ALDHs could diverge and acquire different functions as detoxification and signaling, despite the fact that they have very similar aminoacid sequences. For this study, ALDHs sequences were searched for in the genome of 487 organisms plus the model organisms, Branchiostoma floridae. All 190 sequences obtained were used in a phylogenetic analysis, in the attempt of understanding the primordial function of the enzyme and defining possible groups of conserved aminoacids in the different families of ADLHs. These 190 sequences were also structurally modeled and the shape and volume of the channel where the aldehyde is placed to be oxidized were analyzed. Based on this information, it became possible to predict that the ALDHs moved from ancestral functions of corporal pattern control to a wider spectrum of protection functions. For the second analysis we submitted the complex formed by tridimensional structures of the transcriptional factors bond to DNA in different positions to processes of molecular mechanics, thermodynamic calculi and analysis of the hydrogen bonds, in order to predict the most probable sites of interaction between the receptors and the DNA. The model chosen for this analysis were the transcription factors regulated by retinoic acid, RAR and RXR, using the promoter region of the gene RARE-2 to assay the most probable binding regions of these factors. For this study, 71 protein-DNA complexes were built and submitted to processes of molecular mechanics and thermodynamic calculi. Based on the resulting data, it became possible to predict a region of greater affinity between the transcription factor and the DNA. The analyses of hydrogen bonds enabled us to define the exact region where the interaction between the transcription factor and the DNA takes place and also enabled us to describe the molecular interactions responsible for the specificity of this interaction.
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Regulation der Freisetzung von SCF aus proliferierenden versus differenzierenden Keratinozyten/HaCaTKors, Christian 05 July 2006 (has links)
Der humane Stammzellfaktor (SCF) ist ein zentraler Wachstumsfaktor für Mastzellen in der Dermis und für Melanozyten in den Basalzellschichten der Epidermis. Er wird u. a. von Keratinozyten produziert. In dieser Arbeit wurde die mögliche Regulation der Expression von SCF aus Keratinozyten durch All-Trans-Retinsäure (RA) und Dexamethason in vitro an Hand der HaCaT-Zelllinie untersucht. Die HaCaT-Zellen wurden mit den beiden o. g. Substanzen (10 hoch -5 M bis 10 hoch -9 M) über 24 Stunden und 11 Tage inkubiert. Die Auswertung der HaCaT-Zellzahl, des Gesamt-Proteins SCF, dessen Splicevarianten (mSCF, sSCF) und der Rezeptoren von RA (RAR-alpha, -beta, -gamma) und von Dexamethason (GR-alpha, -beta) erfolgte mittels ELISA und RT-PCR. Dabei ergaben sich folgende Resultate: RA bewirkt einen Anstieg von SCF, Dexamethason bewirkt bei Kurzinkubation eine deutliche Zunahme von SCF, bei Dauerinkubation einen starken Abfall. Die RA-Rezeptoren RA-alpha und -gamma waren nach Inkubation mit RA verstärkt nachzuweisen; die Glukokortikoid-Rezeptoren GR-alpha und -beta zeigten nach Inkubation mit Dexamethason ebenfalls eine vermehrte Expression. Die Expression des Mastzellwachstumsfaktors SCF könnte deshalb unter physiologischen, pathologischen und therapeutischen Bedingungen durch Retinoide und Glukokortikoide reguliert sein. / The human stem cell factor (SCF) is a crucial growth factor for mast cells in the dermis and for the melanocytes in the basal layers of the epidermis. SCF is produced, among others, by keratinocytes. This study examines the possible regulation of the expression of SCF from keratinocytes by all-trans retinoic acid (RA) and dexamethasone in vitro by the keratinocyte cell line HaCaT. The HaCaT-cells were incubated for 24 hours or 11 days, respectively, with one of the above mentioned substances (10 to the power of -5 M to 10 to the power of -9 M). The analysis of the number of HaCaT-cells, of the total SCF protein, its splice variants (mSCF, sSCF), the receptors of RA (RAR-alpha, -beta, -gamma), and of the dexamethasone (GR-alpha, -beta) was done by ELISA and RT-PCR. The following results were found: RA induces an increase of SCF, dexamethasone at a short incubation period a considerable increase of SCF, and at long-term incubation a strong decrease. The RA-receptors RA-alpha und -gamma expression is increased after incubation with RA, and the glucocorticoid-receptors GR-alpha and -beta after the incubation with dexamethasone. Therefore, it is probable that the increase of the mast cell growth factor SCF under physiological, pathological and therapeutic conditions could be regulated by retinoic acid and glucocorticoids.
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Die Rolle des Transkriptionsfaktors GATA-4 im humanen NeuroblastomHoene, Victoria Sophie 04 October 2010 (has links)
Das Neuroblastom, ein embryonaler Tumor des sympathischen Nervensystems, stellt durch seine außerordentliche Heterogenität klinisch eine große Herausforderung dar. Ziel dieser Arbeit war es, die Expression der GATA-Transkriptionsfaktoren GATA-2, -3, -4 und des Kofaktors friend-of-GATA (FOG)-2 im Neuroblastom und im sich entwickelnden sympathischen Nervensystem zu vergleichen. Davon ausgehend wurde die Rolle der Proteine im Neuroblastom näher untersucht. Es wurde gezeigt, dass alle vier Proteine in humanem Neuroblastom-Gewebe sowie in einer humanen Neuroblastom-Zelllinie (SH-SY5Y) exprimiert werden und nukleär lokalisiert sind. Lediglich Gata-4 wurde jedoch im sich entwickelnden sympathischen Nervensystem der Maus nicht exprimiert. Die Einzigartigkeit von GATA-4 bestätigte sich auch durch Microarray-Analysen von 251 Neuroblastom-Proben. Während GATA-2, -3 und FOG-2 signifikant mit Markern für eine günstige Prognose assoziiert wurden, korrelierte die GATA-4 Expression mit MYCN-Amplifikation. Interessanterweise führte die lentivirale Überexpression von GATA-4 zu einer Proliferationsinhibition humaner Neuroblastomzellen (SH-SY5Y und SH-EP) sowie zu der verstärkten Expression von DPYSL3 und Bcl-2. Zudem konnte durch das Differenzierungsagens Retinsäure die GATA-4 Expression induziert werden. So wurde in dieser Arbeit bestätigt, dass normale Entwicklungsprozesse in prognostisch günstigen Neuroblastomen intakt sind. Umgekehrt sind in Tumoren mit schlechterer Prognose diese Prozesse gestört. Die in vitro verlangsamte Proliferation sowie die Induktion von Bcl-2 nach Überexpression von GATA-4 könnten in vivo bei der schlechteren Therapierbarkeit der prognostisch ungünstigen Neuroblastome eine Rolle spielen. Es ist bekannt, dass die Behandlung mit Retinsäure u. a. durch Bcl-2 zu einer Chemoresistenz führen kann. Da die Expression von GATA-4 durch Retinsäure induziert werden und GATA-4 die Expression von Bcl-2 verstärken kann, könnte GATA-4 an der Chemoresistenz beteiligt sein. / Neuroblastoma, an embryonal tumor of the sympathetic nervous system, remains clinically challenging due to its extreme heterogeneity. The aim of this study was to compare the expression of GATA transcription factors GATA-2, -3, -4 and the cofactor friend-of-GATA (FOG)-2 in neuroblastoma and in the developing sympathetic nervous system. The functional role of these proteins in neuroblastoma was subsequently investigated based on the results of the GATA expression studies. The analysis showed that all four proteins are expressed in human neuroblastoma tissue as well as in a human neuroblastoma cell line (SH-SY5Y) and are localized in the cell nuclei. Only Gata-4, however, was not expressed in the developing murine sympathetic nervous system. Its uniqueness was also confirmed by microarray analyses of 251 neuroblastoma specimens. While GATA-2, -3 and FOG-2 were significantly associated with favorable prognostic markers, GATA-4 expression correlated with MYCN-amplification. Interestingly, lentiviral GATA-4 overexpression led to inhibited proliferation of human neuroblastoma cells (SH-SY5Y and SH-EP) as well as to increased expression of DPYSL3 and Bcl-2. In addition, GATA-4 expression could be induced by the differentiation agent retinoic acid. In conclusion, it was confirmed that normal developmental molecular pathways are intact in prognostically favorable neuroblastoma. In contrast, these developmental processes seem to be defective in tumors with unfavorable prognosis. The slowed proliferation, as observed in vitro, as well as the induction of Bcl-2 brought about by GATA-4 overexpression may contribute in vivo to the difficult treatability of prognostically unfavorable neuroblastoma. It is known that treatment of neuroblastoma with retinoic acid can lead to chemoresistance, mediated by Bcl-2 amongst others. Since retinoic acid can induce the expression of GATA-4 and GATA-4 itself can enhance the expression of Bcl-2, GATA-4 could be involved in chemoresistance.
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Interaktion von Retinolsäurerezeptoren und Androgenrezeptor bei Androgen- und Retinoid-Stimulation von Prostatazellen und ProstatakarzinomzellenRichter, Frank 02 July 2002 (has links)
Retinoide sind Steroide, Derivate des Vitamin A, die ihre Wirkung durch Interaktion mit Retinoid-Rezeptoren, lokalisiert im Zellkern, entfalten. Diese Retinoid-Rezeptoren, weisen funktionelle und strukturelle Ähnlichkeiten mit dem Androgenrezeptor auf. Untersuchungen an Zellkulturen zeigen, daß der Effekt von Retinoiden auf das Zellwachstum von Prostata-Epithelzellen und Prostatakarzinomzellen keiner einfachen Kinetik folgt, sondern neben der Abhängigkeit von der Retinoid-Dosis, auch von der Zellinie, insbesondere deren Androgenrezeptor abhängt. So zeigten LNCaP-Zellen Unterschiede in der Zellproliferation im Vergleich zu PC3 oder NRP154 (Prostatakarzinom Ratte) und NRP152 (Prostataepithel Ratte). Northern-blots mit Poly(A)RNA von verschiedenen Prostata-Zellinien (benigne und maligne) nach Behandlung mit Retinoic acid (RA) bestätigte dosisabhängige Unterschiede in der Expression der Androgenrezeptor (AR)-mRNA.Umgekehrt verursachte die Behandlung mit Testosteron in verschiedenen Prostata-Zellinien (benigne und maligne) Unterschiede in der Expression der Retinoid-Rezeptor-mRNA für RAR( und RAR(. Die Ergebnisse unterstützen somit die Hypothese einer Interaktion von Retinoiden und Androgenen mit deren respektiven Rezeptoren. Untersuchungen an humanem Prostatagewebe bestätigten Unterschiede in der Expression von RAR(mRNA und RAR(mRNA mittels RT-PCR. Durch immunhistochemische Untersuchungen an humanem Prostatagewebe mit Antikörpern gegen RAR ( und RAR( konnten deren Lokalisation und Expression nachgewiesen werden. Dabei zeigte sich wiederum eine erhöhte Immunreaktivität von RAR( beim Prostatakarzinom, im Gegensatz zu RAR(, das bei benignem Prostataepithelium eine deutlich stärkere Immunreaktivität aufwies. Zusammenfassend belegen unsere Untersuchungen, daß Retinoide einen meist wachstumshemmenden Effekt auf Prostatakarzinomzellinien verursachen, der wahrscheinlich neben Bindung an Retinoid-Rezeptoren (RARs`) durch Interaktion mit dem Androgenrezeptor (AR), vermittelt durch Hemmung verschiedener membrangebundener Zellproteine und Rezeptoren, wie EGF-R verursacht wird. / Retinoids are steroids, derivatives of vitamine A, that excert their activities by interaction with the retinoic acid receptors (RARs') located in the cell nucleus. The RARs possess structural and functional similarities to the androgen receptor (AR). Investigations in cell cultures demonstrated that the effect of retinoic acid (RA) on cell proliferation is dependent not only on the RA dosage, but also on the androgen receptor status of the cell line. LNCaP cells showed a difference in cell proliferation when treated with RA, as opposed to PC3 or NRP154 (rat prostate cancer cell line) and NRP152 (rat prostate epithelial cell line). Northern blots with Poly(A)RNA from different prostate cell lines (benigne and maligne, with different androgen dependency) when treated with different concentrations of RA, demonstrated a dose-dependent expression of the androgen receptor (AR)mRNA. Conversely resulted the treatment with different concentrations of testosterone to different expressions of the RAR-mRNAs. The results, therefore, support the hypothesis of an interaction of retinoids and androgen with their respective receptors. Investigations with human prostate tissue (malignant and benign) confirms differences in RAR-expression byRT-PCR and immunhistochemistry. Again, prostate cancer showed an overexpression of RAR(, whereas benign prostate tissue demonstrated an overexpression of RAR(. Our investigations, in summary, demonstrate the overall inhibitory effect of retinoids with respect to cell proliferation in prostate cancer cell lines. There is evidence , that this biologic effect is not only triggert by interaction of retinoids and androgens with their own receptors, but occurs by cross-interaction of retinoids with the androgen receptor and androgens with the RARs. Furthermore, the biologic effect of retinoids on cell growth is dependent on membrane bound receptors, such as EGF-R.
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Efeito da suplementação materna com ácido retinoico durante a amamentação no sistema imunológico da prole de camundongos / Effect of maternal RA supplementation during breastfeeding on the immune system of the offspringOliveira, Luana de Mendonça 15 January 2019 (has links)
O ácido retinoico (RA), metabolito ativo da vitamina A, exerce ampla atividade biológica sobretudo na modulação da resposta imunológica. A interação do RA com os seus receptores nucleares induz a transcrição de genes que atuam na homeostase de sítios imunológicos, principalmente no tecido linfóide associado à mucosa intestinal (GALT). O RA promove a diferenciação de células T reguladoras CD4+CD25+Foxp3+, a migração de células efetoras para a mucosa intestinal induzindo a expressão de CCR9 e 4⓻, além de inibir a diferenciação de linfócitos T helper (Th) 17 no intestino, garantindo a homeostase intestinal. Entretanto, eventos mediados pelo RA durante o desenvolvimento do sistema imunológico neonatal ainda não são totalmente conhecidos, principalmente no contexto materno-fetal. Desta forma, o objetivo do trabalho foi avaliar o efeito da suplementação materna com RA, durante a amamentação, no sitema imunológico da prole. Para tanto, camundongos fêmeas C57BL6 Foxp3-GFP receberam 6 doses de RA (1mg/gavagem), durante o período de amamentação, e o grupo controle recebeu apenas óleo vegetal. Os resultados mostram que a suplementação materna com RA foi capaz modular o sistema imunológico da prole aumentando o percentual de linfócitos T reguladores (Treg) esplênicos nas proles com 6 semanas de idade. Além disso, houve aumento percentual de linfócitos Treg, TCD4+ e TCD8+ que expressam CCR9, tanto no baço quanto nos linfonodos mesentéricos da mães e de suas prole, o que pode proporcionar a migração de células para o intestino. Este efeito foi duradouro nas proles até 6 semanas de idade. A suplementação materna com RA elevou o percentual de linfócitos Treg e linfócitos B IgA+ no intestino das proles, e a concentração de imunoglobulina (Ig) A fecal, mas não alterou a composição da microbiota intestinal. Nas mães suplementadas houve redução das concentrações séricas de IgA e IgG. Em contraste com o efeito tolerogênico do RA na lâmina própria do intestino, observamos o aumento sérico de interferon (IFN)- nas proles de mães suplementadas e aumento na secreção de IFN- por esplenócitos induzida por CL097 (agonista de Toll-like receptor 7/8), sugerindo que o RA pode ter um impacto importante na deficiente resposta de perfil Th1 nos neonatos. Para averiguar o efeito modulatório in vivo da suplementação materna de RA, foi avaliada a indução de colite por sulfato de sódio dextrano (DSS) nas proles. Não houve perda de peso acentuado nas proles de mães suplementadas com RA quando comprado às proles de mães controles, além de apresentarem a permeabilidade intestinal conservada e aumento do fator de transformação do crescimento (TGF)- β no homogenato intestinal, indicando menor dano no tecido epitelial do intestino. Apesar disto, o RA não foi capaz de inibir totalmente o processo inflamatório na colite. No conjunto, os achados evidenciam que a suplementação materna com RA foi importante no desenvolvimento da imunidade de mucosa e na manutenção da homeostase intestinal, sendo um importante metabólito para atenuar respostas inflamatórias. A indução sérica de IFN- e após estímulo com CL097 pode indicar o uso de RA como estratégia para potencializar respostas Th1, crucial contra infecções virais e bacterianas no período neonatal. / Retinoic acid (RA), the active metabolite of vitamin A, exerts extensive biological activity mainly in the modulation of the immune response. The interaction of RA with its nuclear receptors induces the transcription of genes that acts on the homeostasis of immunological sites, especially in gut associated lymphoid tissue (GALT). RA promotes the differentiation of CD4+CD25+Foxp3+ regulatory T cells, migration of effector cells to the intestinal mucosa through gut-homing receptors CCR9 and 4⓻, besides inhibiting the differentiation of T helper (Th) 17 cells in the gut, guaranteeing intestinal homeostasis. However, events mediated by RA during the development of the neonatal immune system are not totally known, especially in the maternal-fetal context. Thus, the aim of the study was to evaluate the effect of maternal RA supplementation during breastfeeding on the immune system of offspring. For this, C57BL/6 Foxp3-GFP female mice with 8-10 weeks-old received 6 doses of RA (1mg / gavage) during the breastfeeding period, and the control group received only vegetable oil. The results show that maternal RA supplementation was able to modulate the offspring immune system by increasing the percentage of splenic regulatory T (Treg) cells in offspring at 6 weeks of age. In addition, there was an enhancement in the CCR9 expression on regulatory T cells and CD4+ and CD8+ T cells, in the spleen and in the mesenteric lymph nodes of mothers and their offspring, which can provide migration of cells into the gut. This effect was long-term in offspring up to 6 weeks of age. Maternal RA supplementation also increasing the percentage of regulatory T cells and B IgA+ cells in the offspring´s gut, beside increasing the fecal immunoglobulin (Ig) A concentration, but did not alter the composition of the intestinal microbiota. In the supplemented mothers, serum concentrations of IgA and IgG were reduced. In contrast to the tolerogenic effect of RA on intestinal lamina propria, we observed a serum increase of interferon (IFN)- in offspring and increasing in CL097(Toll-like receptor 7/8 agonist)-induced IFN- secretion by splenocytes, suggesting that RA may have a significant impact on the deficient Th1 profile response in neonates. To investigate the modulatory effect in of RA maternal supplementation, was evaluated the induction of colitis by dextran sodium sulfate (DSS) in the offspring. There was no significant weight loss in the offspring from mothers supplemented with RA in comparison with the offspring from control mothers, as well as having preserved intestinal permeability and increased transforming growth factor (TGF)- β in the intestinal homogenate, indicating less damage to intestinal epithelial tissue. Despite this, RA was not able to totally inhibit the inflammatory process in colitis. Taken together, the findings show that maternal RA supplementation was important in the development of mucosal immunity and maintenance of intestinal homeostasis, being an important metabolite to attenuate inflammatory responses. Induction of serum IFN- after TLR7/8 (CL097) stimulation may indicate the use of RA as a strategy to potentiate Th1 responses, crucial against viral and bacterial infections in the neonatal period.
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Einfluss von all-trans-Retinsäure (ATRA) auf die Expression von Differenzierungsmarkern bei humanen Mastzellen unterschiedlicher ReifegradeThienemann, Friedrich 07 August 2006 (has links)
Mastzellen (MZ) reifen zu terminal differenzierten Zellen erst in peripheren Geweben. ATRA ist ein wesentlicher Regulator der Hämatopoese und kann auf positive wie auf negative Weise deren Differenzierung beeinflussen – die Qualität ist dabei häufig abhängig vom Reifegrad. Die Arbeit beschäftigte sich daher mit der Frage, ob die Effekte von ATRA auf MZ ebenfalls abhängig von deren Reifegrad sind. Unreife HMC-1 5C6 Zellen, differenziertere LAD 2 Zellen und reife kutane MZ (KMZ) wurden mit ATRA behandelt und die Effekte auf spezifische Mastzellmarker auf Protein- und mRNA-Ebene untersucht. Die Proteinexpression von c-kit, FceRI, Tryptase und Chymase wurde bei allen drei Zellsystemen herunterreguliert. Änderungen der Proteinexpression wurden qualitativ, wenngleich nicht immer quantitativ auf mRNA-Ebene reflektiert, d.h. es gab Marker, bei denen die Herunterregulation auf der einen oder anderen Ebene überwog. Eine genaue Quantifizierung der ATRA-Effekte auf die Tryptase und Chymase zeigte eine prozentual erheblich stärkere Herunterregulation der mRNA als des Proteins. Invers dazu war der Effekt bei c-kit, ein Effekt, der besonders deutlich bei HMC-1 5C6 auszumachen war. Zur Klärung, welcher Mechanismus der von der mRNA-Ebene unabhängigen Herunterregulation des c-kit-Proteins zugrunde liegt, wurden HMC-1 5C6 zusätzlich zu ATRA mit Inhibitoren fundamentaler Zellfunktionen inkubiert. Cycloheximid allein war dabei in der Lage, die Wirkung von ATRA zu imitieren. Es kann also vermutet werden, dass die starke Herunterregulation des Proteins im Vergleich zur mRNA einem translationellen Mechanismus folgt. Betrachtet man alle Effekte gemeinsam, so zeigte ATRA den stärksten Einfluss auf das am weitesten differenzierte Mastzellsystem, nämlich KMZ. Geringer waren die Effekte bei LAD 2, wohingegen bei HMC-1 5C6 das schwächste Ansprechpotential gegenüber ATRA gefunden wurde. Dies ist von besonderem Interesse, weil ATRA normalerweise wesentlich potenter auf unreif-proliferierende Systeme wirkt. ATRA hat auf humane MZ einen deutlich dedifferenzierenden Effekt, der weitgehend unabhängig vom Reifegrad der Zellen operiert. Die Effekte scheinen dabei in Abhängigkeit vom betrachteten Marker nicht auf die transkriptionelle Ebene beschränkt zu sein, sondern könnten auch einem translationellen Mechanismus unterliegen. / Mast cells (MC) are of hematopoietic origin but complete their differentiation exclusively within tissues. A large number of mediators positively or negatively affect the maturation process of MC. ATRA is a potential master regulator of haematopoiesis, where it primarily affects immature and proliferative leukocytes. Here, the effects of ATRA (3-7d) on MC that span different stages of maturation, i. e. immature-leukemic HMC-1 5C6 cells, intermediately matured LAD 2 cells, and terminally differentiated skin MC were analyzed. The expression of the lineage markers c-kit, FceRI, tryptase, chymase und histidindecarboxylase (HDC) was studied in parallel at protein level by flow-cytometric analysis and at mRNA level by RT-PCR. ATRA exposure led to a down-regulation at protein and at mRNA level of c-kit, FceRI, tryptase and chymase by all MC subtypes. Comparing protein and transcript levels, however, substantial differences between c-kit and the proteases were noted. c-kit down-regulation was more pronounced at protein level, whereas the opposite was found with proteases. Further analysis revealed the existence of a second mechanism of c-kit down modulation that proceeded rapidly and independently of mRNA changes. This pathway was restricted to immature MC and could be mimicked by cycloheximide, suggesting that altered translation may account for the phenomenon. Taken together, the study indicates that MC are significant target cells of ATRA throughout their lifespan, but that the molecular events underlying down-regulation of lineage markers may be shifted in the course of MC differentiation. The strongest effects of ATRA were observed in mature MC, while this accounts to a lesser degree for LAD 2 cells. In contrast, the immature and highly proliferating HMC-1 5C6 cells presented even less sensitive to ATRA. Therefore, ATRA has dedifferentiating potential towards human MC that is most pronounced in mature MC. Depending on the specific marker, protein down regulation can underlie various mechanisms. In this regard, c-kit seems to follow a translational rather than transcriptional inhibitory process.
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Mecanismos embrionários de diferenciação de precursores coronários: princípios para aplicação em terapia celular. / Embryonic mechanisms of coronary precursor differentiation: principles for cell therapy.Azambujá, Ana Paula 17 August 2009 (has links)
As coronárias derivam do proepicárdio, uma estrutura formada por precursores dos constituintes de vasos coronários, células endoteliais e musculares lisas (CoSMC). In vivo observa-se um marcante atraso entre a diferenciação endotelial e a integração de CoSMC à parede do vaso. O objetivo deste trabalho foi identificar os mecanismos que inibem a diferenciação a CoSMC in vivo. Baseados na perda progressiva da expressão de raldh2, a principal enzima de síntese de ácido retinóico (AR), nós exploramos a sinalização por AR como um possível inibidor da diferenciação a CoSMC. Através de um vetor adenoviral de expressão de raldh2 e da inibição in vivo da síntese de AR nós demonstramos que a sinalização por AR bloqueia a diferenciação a CoSMC dos precursores coronários. Nós também identificamos o VEGF como um fator chave no controle da diferenciação a CoSMC. Em conjunto, nossos dados suportam o modelo que a síntese de AR e VEGF durante o desenvolvimento cardíaco foi co-optada para o bloqueio da diferenciação a CoSMC até o estabelecimento de uma vasta malha vascular. / Coronary vessels derive from the proepicardium (PE), a structure formed by precursor of coronary vessels cells, endothelial and smooth muscle cells (CoSMC). In vivo there is a clear gap between the endothelial differentiation and the integration of CoSMC into the vascular tubes. The aim of this work was to understand the mechanisms controlling the delayed in vivo CoSMC differentiation. Based on the progressive loss of expression of raldh2, the main retinoic acid (RA) synthesizing enzyme, we explored the RA signaling as a possible candidate inhibitor of CoSMC differentiation. Using a adenoviral raldh2 expression system and in vivo inhibition of RA synthesis we showed that RA signaling act as a brake to slow CoSMC differentiation in PE-derived cells. We also identified VEGF as key factor acting on the control of CoSMC differentiation. Together our results support a model that AR and VEGF synthesis during cardiac development was co-opted to block the CoSMC differentiation of coronary precursors before an extensive endothelial network of tubes is established.
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Regulação molecular da expressão atrial - específica do gene SMyHC3. / Molecular regulation of atrial-specific expression of the SMyHC3 gene.Sampaio, Allysson Coelho 02 June 2010 (has links)
Para elucidar as vias genéticas controlando a formação das câmaras cardíacas, foi analisada a regulação do promotor atrial-específico do gene de codorna que codifica a isoforma lenta da cadeia pesada de miosina (slow myosin heavy chain 3 -SMyHC3). Em camundongos transgênicos, a expressão atrial-específica dos 840 pb do promotor SMyHC3 fundido ao gene repórter da fosfatase alcalina (HAP), SMyHC3-HAP, é controlada pelos 72 pb mais distais deste promotor. Este fragmento contém sítios putativos para ligação a receptores nucleares os quais foram denominados ECRRN (elemento complexo de resposta a receptores nucleares), definidos por modelagem molecular. Tratamento de embriões SMyHC3-HAP com ácido retinoico (AR) expande o domínio atrial de expressão do transgene, enquanto que a inibição da via de sinalização por AR reduz o domínio de expressão do transgene. Ensaios de gel shift revelam que os receptores de AR, RAR/RXR se ligam fracamente a esse promotor. Também, esses receptores não ativam o promotor SMyHC3 em experimentos de transfecção transiente, mesmo na presença de coativadores, tais como p300, CBP e GRIP1. Isso sugere a participação indireta de AR na regulação deste marcador atrial. Ensaios de transfecção celular demonstram que COUPTF2 é capaz de ativar o promotor SMyHC3 e, siRNA contra COUPTF2 inibe esta transativação. Embriões tratados com AR apresentam um aumento geral da expressão de COUPTF2, reforçando a idéia de que AR age indiretamente ativando este gene. Estudos de bioinformática revelam que o ECRRN está presente na região 3 do gene AMHC1 de galinha e alinhamentos indicam que pode se tratar de um elemento móvel que pode ter sido adquirido por um evento de exaptação. Em resumo, COUPTF2 e AR controlam a expressão do promotor SMyHC3, porém a natureza da relação entre os 2 elementos necessita ser elucidada. / To elucidate the genetic pathways controlling cardiac chamber formation, the atrial specific gene promoter SMyHC3 was analyzed. In transgenic mice, the atrial specific expression an 840 bp of the SMyHC3 promoter was linked to reporter gene human alkaline phosphatase (HAP), SMyHC3-HAP. By directed mutagenesis and deletion analysis we identified the more distal 72 bp of the promoter as responsible of the atrial expression. This fragment contains putative binding sites to nuclear receptors, the CNRRE (complex nuclear receptor response element), defined by molecular modeling. RA (retinoic acid) treatment in SMyHC3-HAP embryos expands the atrial domain. However, the RA effectors, RXR/RAR bind with low affinity to the SMyHC3 promoter. These receptors are not able to activate the promoter even in the presence of coactivators such as p300, CBP and GRIP1. These results suggest that RA acts indirectly to regulate this atrial marker. Cell transient transfection shows that COUPTF2 activate the SMyHC3 promoter, and COUPTF2 siRNA inhibits the transactivation of the SMyHC3 promoter. Treatment of embryos with RA increases the COUPTF2 expression reinforcing the idea that this receptor could be regulatedindirectly by RA. Bioinformatic studies revealed that CNRRE is present in the 3 region of the ortholog chicken AMHC1 gene. Alignments indicate that this CNRRE could have been acquired by an exaptation event. In conclusion, the SMyHC3 promoter seems to be controlled by RA and COUPTF2 governing atrial expression. However the nature of relationships between RA and COUPTF2 need to be elucidated.
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Análise da expressão dos genes CRABP1, CRABP2, GRP e RERG em adenomas hipofisários funcionantes e clinicamente não funcionantes / Analysis of CRABP1, CRABP2, GRP and RERG gene expression in functioning and clinically nonfunctioning pituitary adenomasChile, Thais 11 December 2009 (has links)
Os tumores hipofisários representam cerca de 10% a 15% das neoplasias intracranianas. Embora a etiopatogenia ainda não seja plenamente caracterizada, muitos mecanismos moleculares envolvidos na tumorigênese hipofisária já foram desvendados. Utilizandose da metodologia de arranjos de cDNA contendo aproximadamente 20.000 genes, nosso grupo recentemente comparou a expressão de duas condições distintas: um pool de quatro adenomas hipofisários clinicamente não funcionantes e a metástase de um carcinoma hipofisário não funcionante. Vários genes mostraram-se diferencialmente expressos, entre eles, CRABP1 (cellular retinoic acid binding protein 1), CRABP2 (cellular retinoic acid binding protein 2), GRP (gastrin-releasing peptide) e RERG (RAS-like, estrogen-regulated, growth inhibitor). Este estudo visou avaliar a expressão desses quatro genes em uma série de 59 adenomas hipofisários (30 adenomas clinicamente não funcionantes, 13 somatotrofinomas, 8 corticotrofinomas e 8 prolactinomas), comparando cada grupo tumoral com um conjunto de tecidos hipofisários normais. Enquanto os prolactinomas demonstraram expressão reduzida do RNAm dos genes CRABP1 e CRABP2 quando comparados ao grupo de tecidos normais, os somatotrofinomas apresentaram expressão reduzida apenas do RNAm de CRABP2. Os adenomas clinicamente não funcionantes, por sua vez, demonstraram menor expressão do RNAm de GRP e maior expressão do RNAm de RERG quando comparados ao grupo de hipófises normais. Portanto, observou-se que tanto o gene CRABP1 quanto os genes CRABP2, GRP e RERG apresentaram diferenças na expressão do transcrito entre os grupos de adenomas de hipófise, contudo, seu papel na tumorigênese hipofisária permanece a ser investigado. / Pituitary tumors account for approximately 10%-15% of the intracranial neoplasms. Although the pathogenesis is not fully characterized, many molecular mechanisms involved in pituitary tumorigenesis have been unraveled. Using the methodology of cDNA microarray containing approximately 20000 genes, our group recently compared the expression of two distinct conditions: a pool of four clinically nonfunctioning pituitary adenomas and a spinal cord metastasis of a nonfunctioning pituitary carcinoma. Several genes were shown to be differentially expressed, among them, CRABP1 (cellular retinoic acid binding protein 1), CRABP2 (cellular retinoic acid binding protein 2), GRP (gastrin-releasing peptide) and RERG (RAS-like, estrogen-regulated, growth inhibitor). This study aimed to evaluate the expression of these four genes in a series of 59 pituitary adenomas (30 nonfunctioning, 13 GH-secreting, 8 ACTH-secreting and 8 PRL-secreting adenomas), comparing each tumor group with a set of normal pituitary tissues. While PRL-secreting adenomas showed lower expression of CRABP1 and CRABP2 mRNA when compared with normal tissues, GH-secreting adenomas had only lower expression of CRABP2 mRNA. Clinically nonfunctioning adenomas showed lower expression of GRP mRNA and higher expression of RERG mRNA when compared with the normal pituitary glands. Therefore, it was observed that not only the CRABP1 gene but also the CRABP2, GRP and RERG genes showed differences in transcript expression between the groups of pituitary adenomas. However, their role in pituitary tumorigenesis remains to be investigated.
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Spatiotemporal roles of retinoic acid signaling in the cephalochordate amphioxus / Régulation spatio-temporelle de la voie de signalisation de l'Acide Rétinoïque chez le Céphalochordé amphioxusChen, Jie 17 May 2011 (has links)
L'acide rétinoïque (AR) est un morphogène dérivé de la vitamine A, qui intervient dans le contrôle de l'organogenèse, de la prolifération et de la différenciation cellulaires chez les Chordés. Dans ce contexte, nous avons étudié les régulations spatio-temporelles de la voie de signalisation de l’AR au cours du développement de l’amphioxus, en mettant l'accent sur l’espèce européenne Branchiostoma lanceolatum.Nous avons tout d'abord inhibé ou activé la voie de signalisation de l’AR lors du développement embryonnaire en traitant des embryons d’amphioxus à des doses variables de composés pharmacologiques interférant avec le métabolisme des rétinoïdes. Grâce à l’utilisation d’outils mathématiques spécifiques, nous avons établi un schéma détaillé des effets des traitements effectués sur le développement du système nerveux central (SNC) et du pharynx chez l’amphioxus en nous basant sur l’expression de gènes marqueurs de tissus spécifiques. À l’issue de cette première analyse, nous avons par la suite étudié les effets d’une perturbation de la signalisation de l’AR à des points clés du développement chez l’amphioxus lors de la régionalisation du SNC et du pharynx. Nous avons ainsi montré que la voie de signalisation de l’AR intervient dans la régionalisation de l’axe antéro-postérieur via le contrôle des gènes hox dès le stade gastrula et jusqu’aux stades larvaires. En outre, nous avons réalisé l'étude préliminaire du gène homologue chez l’amphioxus du gène aldh1a2 des Vertébrés, et avons démontré que la régulation du niveau de synthèse de l’AR au cour du développement est conservée entre l’amphioxus et les Vertébrés. Finalement, nous avons montré que la voie de l’AR participe également à la morphogenèse caudale chez l’amphioxus, et que le mécanisme impliqué semble différent de celui proposé chez les Vertébrés où l’AR contrôle la structuration de la nageoire caudale par le ciblage des tissus mésenchymateux. / Retinoic acid (RA) is an endogenous vitamin A-derived morphogen. In this context, we studied the spatiotemporal roles of RA signaling in amphioxus development, focusing on the European amphioxus species: Branchiostoma lanceolatum. We first created excess and insufficiency models of RA signaling by exposing amphioxus embryos to series of doses of different pharmacological compounds targeting either the RA receptors or the RA metabolism machinery. By introducing the important mathematical concept of a Cartesian coordinate system founded by René Descartes, we created detailed diagrams of the concentration-dependent defects caused by RA signaling in the central nervous system (CNS) and pharynx of amphioxus by evaluating the statistical significances of tissue-specific marker gene expression in labeled embryos. This analysis yielded a very detailed description of the sensitivities of the developing amphioxus CNS and pharynx to altered RA signaling levels. Following this initial challenge, we correlated the effects of altered RA signaling levels with key amphioxus developmental stages characterized by structural transitions in CNS and pharynx. We show that hox-mediated RA signaling in axial patterning is active beyond the gastrula stage and might be maintained until at least early larval stage, with possible roles in more regionalized axis formation and organ induction. In addition, we carried out a preliminary study on a RA synthesizing gene in amphioxus, called aldh1a, a possible homolog of the vertebrate aldh1a2 gene, demonstrating that the feedback between RA signaling and RA synthesizing levels has emerged before the split of the cephalochordate and vertebrate lineages. Moreover, we are able to show that RA signaling also participates in tail fin morphogenesis in amphioxus by a mechanism that is probably not comparable to that in vertebrates, where RA modulates caudal fin patterning through targeting mesenchymal derivatives.
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