Vegetative species diversity is under threat from environmental pressures, particularly climate change. As the impacts of climate change vary from place to place, response of vegetative species diversity to a changing climate also vary depending on geographical location. The response of vegetative species diversity under dry conditions in Zimbabwe is not well known. This study assessed the impact of climate change on vegetative species diversity under semiarid conditions of Masvingo province in Zimbabwe. This was achieved by determining climate change trends over a period of forty years (1974-2014), and examining the relationship between vegetative species diversity and spatially interpolated climate data. The absence of historical diversity data prompted the use of remote sensing to enable the assessment of spatial and temporal changes. Thus, the Normalised difference vegetation index (NDVI) was used to assess vegetative species diversity changes after establishing a positive relationship between species diversity and NDVI. The mixed methods research design was used as the strategy of inquiry. The non-aligned block sampling design was used as the sampling framework from which 198 sampling points were identified. Meteorological data obtained from Zimbabwe Meteorological Services Department (ZMSD) and the National Climate Data Centre (NCDC) were used for climate change analysis. Data collected through image analysis, direct observations, questionnaire surveys and interviews were used to assess the impact of climate change on vegetative species diversity. Results indicate that all temperature and precipitation variables have significant (p<0.05) trends over the period under study. However, the trend for seasonal total precipitation was not significant but declining. The significant trends indicate that climate change occurred over the period under study. 93% of the respondents confirmed having experienced the climate change phenomenon. Results also show a significant relationship between climate elements (precipitation and temperature) and vegetative species diversity represented by Shannon Weaver Index (H). More so, there is a positive relationship between NDVI and H. Vegetative species diversity represented by NDVI decreased over the period under review. The results indicate that climate change has contributed to the decrease of vegetative species diversity in Masvingo province, thus it is a force behind many other factors contributing to biodiversity loss. / College of Agriculture and Environmental Sciences / Ph. D. (Environmental Sciences)

Balancing increasing elephant numbers with biodiversity conservation in small reserves has become a concern for many protected area managers. Elephants are considered important agents of disturbance creating heterogeneity and thus contributing to the maintenance of biodiversity. However elephants also damage vegetation through their destructive feeding habits, and this has led to pressure to reduce elephant populations in many reserves. Quantitative data on the impact of elephants on invertebrates, the main component of biodiversity at the species level, are lacking. The aim of this project was to assess the effect that habitat alteration by elephants has on the diversity of selected ground-dwelling invertebrates (ants, centipedes, millipedes, spiders, scorpions and termites) through the provision of logs and dung as a potential refuge niche for these invertebrate communities, and to determine the effect of spatial (vegetation types) and temporal (season and age of dung) variation on the invertebrates using these refugia. Variation in impacts was considered important because savanna is not homogenous and the impact of the refugia is likely to be dynamic in terms of seasonal trends in invertebrate populations, and in terms of changes in the environmental conditions offered by the refugia. Elephant impact on vegetation, quantity of refugia (logs and dung) produced and invertebrate diversity associated with refugia were determined for 115 transects within Madikwe Game Reserve in the North Western Province, South Africa. Invertebrate abundance, species richness and diversity were always higher under refugia than in areas without refugia. Vegetation utilisation, frequency of refugia production and invertebrate diversity showed strong temporal variation (seasonal); elephant impact and production of logs were higher in winter than in summer because elephants are more likely to feed on woody vegetation in winter when grass nutrient levels are low. Invertebrate diversity under the logs was higher in summer than in winter, and this probably reflected the higher abundance and diversity of invertebrates that are usually associated with the warmer, wetter summer months. The effect of adding refugia to three vegetation types on invertebrate diversity was tested experimentally at Makalali Private Game Reserve in the Limpopo Province, South Africa. Logs and elephant dung were set out in five plots each measuring 20m x 20m within Govender - iii mixed bushveld, riverine and mopane woodland. Significant differences were observed in invertebrate abundance, species richness and diversity between the refugia and control plots that lacked refugia and between the three vegetation types sampled. Similarity between invertebrate communities utilising the different refugia types and between the three different vegetation types were tested using the Jaccard similarity coefficient. The three vegetation types shared fewer than 50% of their species, as did the logs, dung and control sites. However the results obtained do illustrate a higher degree of similarity between the refugia substrates (logs and dung) than the control sites and between the more heterogeneous vegetation types (mixed bushveld and riverine) than the mopane veld. This indicated that invertebrate communities associated with refugia were not uniform, but were influenced by vegetation type. An experimental test of temporal changes in invertebrate community composition illustrated the importance of elephant dung as a microhabitat for different invertebrate groups over different ages of dung (three days, two, four, 12 and 32 weeks old). Colonisation of the dung, by dung beetles was immediate but as the microclimate of the dung changed with time, the new conditions were ideal for other invertebrate taxa. Over a period of eight months, the change of invertebrate communities utilising the dung included dung beetles, followed by millipedes and [mally ant and termite communities. The results of this study illustrated the importance of refugia (logs and dung) produced by elephants for ground-dwelling invertebrate species in the savanna environment. The extent of the influence of the refugia varied both spatially and temporally and this should be considered in future monitoring or in measuring impacts. While further research on a broader range of organisms and at larger scales is necessary, elephants do have a positive impact on at least some components of biodiversity, through the process of facilitation of refugia. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2005.

The availability of several methods to unambiguously mark individual cells has strongly fostered the understanding of clonal developments in hematopoiesis and other stem cell driven regenerative tissues. While cellular barcoding is the method of choice for experimental studies, patients that underwent gene therapy carry a unique insertional mark within the transplanted cells originating from the integration of the retroviral vector. Close monitoring of such patients allows accessing their clonal dynamics, however, the early detection of events that predict monoclonal conversion and potentially the onset of leukemia are beneficial for treatment. We developed a simple mathematical model of a self-stabilizing hematopoietic stem cell population to generate a wide range of possible clonal developments, reproducing typical, experimentally and clinically observed scenarios. We use the resulting model scenarios to suggest and test a set of statistical measures that should allow for an interpretation and classification of relevant clonal dynamics. Apart from the assessment of several established diversity indices we suggest a measure that quantifies the extension to which the increase in the size of one clone is attributed to the total loss in the size of all other clones. By evaluating the change in relative clone sizes between consecutive measurements, the suggested measure, referred to as maximum relative clonal expansion (mRCE), proves to be highly sensitive in the detection of rapidly expanding cell clones prior to their dominant manifestation. This predictive potential places the mRCE as a suitable means for the early recognition of leukemogenesis especially in gene therapy patients that are closely monitored. Our model based approach illustrates how simulation studies can actively support the design and evaluation of preclinical strategies for the analysis and risk evaluation of clonal developments.

Species distribution and composition of bird communities of South Africa is not accidental, but is influenced by environmental conditions, habitat structure, and natural history of the area. Functional traits of the species (morphology, dietary strategies or reproductive parameters) give information on how the individuals interact with the environment they live in. The description of the functional characteristics, expose specific adaptations and the role of the species in the studied ecosystem. On the basis of functional characteristics we are able to estimate functional diversity of studied community. The spatial variability of species and functional diversity allocates longitudinal gradient. Regarding the morphological and reproductive parameters that are continuous in nature and more species- specific, we observe a faster increase in functional diversity. Considering the feeding preferences that are categorical and show a limited number of levels, a modest increase in functional diversity apparent is. Dietary functional diversity is more evenly distributed. Relationship between the functional and species diversity can provide us with information about how species are added to the community or answer the question to what extent the higher number of species requires more ecological space. The...

A dissertation Submitted to the Faculty of Science, University of the Witwatersrand, Johannesburg, for the Degree of Master of Science. . / The cyclone Domoina floods of 1984 were responsible for the large scale destruction and devastation of riverine vegetation in the Umfolozi Game Reserve. This event highlighted the need to gain an understanding af the structure and dynamics of riverine vegetation and to use this knowledge to develop a management strategy directed at the future recovery and maintenance of riverine vegetation in the Umfolozi Game Reserve. (Abbreviation abstract) / Andrew Chakane 2018

Student Number : 9008538J - MSc Dissertation - School of Biology - Faculty of Science / O’Regan SP, 2005. The long-term effects of fire frequency and season on the woody vegetation in the Pretoriuskop sourveld of the Kruger National Park. MSc Dissertation, University of the Witwatersrand, Johannesburg. The role of fire in the management of conservation areas has historically been a contentious issue in which traditional agricultural principles and ever-changing conservation principles tend to collide. The Kruger National Park (KNP) in the early 1950s was no exception where the appropriate use of fire and its ecosystem consequences were hotly debated. The controversy surrounding the management of fire in the KNP highlighted the significant lack of understanding of fire and its role in the ecosystem and because of this controversy, the Experimental Burn Plot (EBP) experiment was established in 1954. The EBP experiment comprised 12 treatments, and a pseudo-randomised block design was used in which the 12 fire treatments were replicated four times each in four of the six major vegetation zones identified at the time. The EBP experiment originally comprised 192 experimental plots approximately 7 Ha in size each and covered approximately 12 km2 in the KNP. The twelve fire treatments were an annual burn in August, biennial and triennial burns in February, April, August, October, and December, and a control on which fire was excluded. Despite having been plagued with negative assessments from internal and external researchers from its inception, the EBP experiment was meticulously maintained, and it has now become a valuable research asset in the KNP. Four replicates of twelve plots each were located in the Pretoriuskop sourveld landscape of the KNP. These replicates were named Fayi, Kambeni, Numbi, and Shabeni after nearby landmarks. The Pretoriuskop region is a moist infertile mesic-savanna, which experiences on average 744mm of rain annually. The dominant tree species in Pretoriuskop are Dichrostachys cinerea and Terminalia sericea and the dominant grass species is Hyperthelia dissoluta. A baseline survey of the woody vegetation was done on all the Pretoriuskop plots in 1954 by HP Van Der Schijff. A second survey of the woody vegetation on all the Pretoriuskop plots was done in 1996 by SP O’Regan. This provided a 42-year period of treatment application over which the effects of fire frequency and season on the woody vegetation of the Pretoriuskop region were studied. The aim of this study was to investigate the long-term effects of the twelve fire treatments on the density, structure, and species composition of the woody vegetation in Pretoriuskop. The objectives of this study were: 1. To carry out a complete re-survey of the trees and shrubs on the Pretoriuskop EBPs using similar methods as those used in the baseline survey in 1954. 2. To capture into a digital format pertinent woody vegetation survey data from surveys that had been conducted on the Pretoriuskop EBPs between 1954 and 1996. 3. To compare the density, structure, and composition of the woody vegetation on the Pretoriuskop EBPs between 1954 and 1996, to determine the effects of fire on the woody vegetation of Pretoriuskop. 4. To investigate the history of the Kruger National Park Experimental Burn Plots experiment. The four replicates in the Pretoriuskop region were found generally to have very similar woody vegetation traits (density, species composition, and structural composition). However, the EBPs were established and surveyed in two distinct phases, the first phase comprised the control, August Annual, and the Biennial plots, and the second phase comprised the Triennial plots. The baseline structural composition of the plots established in the first phase was different from the structural composition of the plots in the second phase. Furthermore, the Pretoriuskop EBPs are located in two distinct vegetation types, namely the open and the closed Terminalia sericea \ Combretum woodlands of the Pretoriuskop region. The Numbi and Shabeni replicates are in the open Terminalia sericea \ Combretum woodlands, and the Kambeni and Fayi replicates are in the closed Terminalia sericea \ Combretum woodlands. It was found that the species composition of the plots was influenced by the location of the plots in the different vegetation types. The exclusion of fire in the Pretoriuskop sourveld results in an increase in the density of the overstorey and understorey woody vegetation, and an increase in the number of species, species diversity, and species evenness. This is because fire sensitive and fire intolerant woody species become more abundant as the period between fires increases. In Pretoriuskop, there is no evidence of relay floristic succession, because fire sensitive and fire intolerant woody species do not replace fire tolerant species. Instead, the floristic succession is accumulative and fire tolerant, fire sensitive, and fire intolerant woody species coexist as the period between fires increases. Woody species tolerant of frequent fires in Pretoriuskop are Albizia versicolor, Catunaregam spinosa, Lonchocarpus capassa, Pavetta schumanniana, Senna petersiana, Strychnos madagascariensis, and Turraea nilotica. Woody species that are sensitive or intolerant of fire in Pretoriuskop are Acacia swazica, Bauhinia galpinii, Combretum mossambicense, Commiphora neglecta, Croton gratissimus, Dalbergia melanoxylon, Diospyros lycioides, Diospyros whyteana, Euclea natalensis, Hyperacanthus amoenus, Kraussia floribunda, Ochna natalitia, Olea europaea, Psydrax locuples, Putterlickia pyracantha, Tarenna supra-axillaris, and Zanthoxylum capense. Dichrostachys cinerea and Terminalia sericea were found to dominate in areas that had been burnt frequently as well as areas where fire has been excluded. The change in the density of the woody vegetation as the inter-fire period increases is not linear but rather J shaped with an initial decrease in the density as the inter-fire period increases from 1 year to 3 years. This initial decrease in density is the result of a loss of very short (<1m tall) woody individuals. In contrast, there is no initial decrease in the number of tree equivalents (phytomass) of the woody vegetation as the inter-fire period increases. After the initial decrease in the density of the woody vegetation, the density increases as the inter-fire period increases beyond 3 years. Generally in Pretoriuskop, post fire age of the vegetation was found to be an important factor affecting the structure of the woody vegetation, and as the inter-fire period increases the number of structural groups, the structural diversity, and the structural evenness of the woody vegetation increases. As the inter-fire period increases the number of single-stem individuals relative to the number of multi-stem individuals increases, and the average height of the woody vegetation increases. The findings regarding the effects of fire frequency on the Pretoriuskop EBPs were similar to the findings on other fire experiments in mesic African savannas. The finding on the Pretoriuskop EBPs differed from the findings in other fire trials that were in arid savannas in Africa. Generally, the exclusion of fire in moist savannas (> 600 mm of rain annually) results in the woody vegetation becoming denser, while the exclusion of fire in arid to semi-arid savannas (< 600mm of rain annually) does not result in the woody vegetation becoming denser. In Pretoriuskop, fires occurring in summer between December and February have a different impact on the density, species composition, and structure of the woody vegetation than fires occurring in winter between August and October. Furthermore, fires occurring in April have a different impact on the density, species composition, and structure of the woody vegetation in Pretoriuskop. Woody vegetation burnt by summer fires is denser than woody vegetation burnt by winter fires. The number of species and species diversity of the woody vegetation is also higher in vegetation burnt by summer fires in comparison with vegetation burnt by winter fires. The density and species composition of woody vegetation in areas that have been burnt in summer fires is more similar to areas where fire has been excluded than to areas that have been burnt in winter fires. The woody species associated with vegetation burnt in summer fires and where fire has been excluded are Euclea natalensis, Antidesma venosum, Diospyros lycioides, Phyllanthus reticulatus, Grewia flavescens, Grewia monticola, Ochna natalitia, Peltophorum africanum, Rhus pyroides, Diospyros mespiliformis, Rhus transvaalensis, Securinega virosa, Putterlickia pyracantha, Rhus pentheri, Commiphora neglecta, Heteropyxis natalensis, and Olea europaea. Structurally the average height of the woody vegetation is taller in areas burnt by winter fires than in areas burnt by summer fires. The woody vegetation in areas burnt in summer fires have more single-stem individuals relative to multi-stem individuals than in areas burnt in winter fires. The structural composition of areas burnt in summer fires is more similar to areas where fire has been excluded than with areas burnt in winter fires. The structure of the woody vegetation in areas burnt in winter fires is generally dominated by multi-stem individuals that are 0-1m tall or 3-5m tall. The structure of the woody vegetation in areas burnt in summer fires or where fire has been excluded is dominated by both single-stem and multi-stem individuals of all heights and basal diameters. Findings regarding the effect of early dry season fires (April) in comparison with late dry season fire (August) on the woody vegetation are consistent with the findings on other fire trails in Africa. However, a comparison of all the fire-timing treatments between the Pretoriuskop and Satara EBPs in the KNP reveals that the timing of fires affects the woody vegetation differently in different areas even when the affects at certain times appear similar. The data collected on the Pretoriuskop EBPs reveals that there have been significant changes in the woody vegetation in Pretoriuskop between 1954 and 1996. The density of the woody vegetation increased between 1954 and 1996 by almost 200%. The number of species and the species diversity of the woody vegetation also increased between 1954 and 1996. In 1954, there were approximately equal numbers of single-stem and multi-stem individuals, while in 1996 there were more multi-stem individuals than single-stem individuals. The increase in atmospheric CO2 levels between 1954 and 1996 is believed to have been a factor that has driven the changes in the woody vegetation of Pretoriuskop between 1954 and 1996.

A descrição de padrões, i.e., tendências ou arranjos não aleatórios em comunidades, possui um longo histórico em ecologia vegetal. Comumente, a estrutura e diversidade de comunidades vegetais são descritas a partir de sua distribuição em classes de tamanho (SDD), distribuição espacial (SSD) e de sua distribuição abundância de espécies (SAD). Isto porque há um pressuposto de que padrões existentes nestes descritores de comunidades são assinaturas de processos fundamentais na sua organização e funcionamento. Assim, a descrição de padrões é com frequência o primeiro passo para gerar ou testar hipóteses sobre esses processos que regulam a estrutura e diversidade de comunidades. Organizada em diferentes capítulos, esta tese teve como objetivo central descrever e comparar padrões em diferentes comunidades arbóreas Neotropicais, buscando gerar hipóteses sobre os processos que regulam sua organização e funcionamento. Para tanto, buscou-se utilizar uma abordagem de inferência baseada no ajuste e seleção de modelos, que foi realizado usando máxima verossimilhança estatística. Em todos os capítulos, os dados sobre as comunidades arbóreas são oriundos de diferentes parcelas florestais permanentes, quatro delas com 10,24 hectares, localizadas no Brasil, e outra com 50 hectares, localizada no Panamá. Além da introdução geral sobre os conceitos e técnicas utilizadas nesta tese (Capítulo 1), foram avaliados e comparados: (i) os descritores básicos da estrutura florestal (i.e. abundância, área basal e riqueza de espécies por sub-parcela - Capítulo 2); (ii) a SAD e como ela varia com o aumento da escala e tamanho amostral (Capítulo 3); (iii) a SDD e como ela se relaciona com a demografia das espécies (Capítulo 4.1 e 4.2); e, por fim, (iv) a SSD e como ela varia entre parcelas permanentes (Capítulo 5). Apenas a relação entre a SDD e a demografia das espécies foi realizada como os dados da parcela panamenha, enquanto que os demais capítulos se referem as quatro parcelas brasileiras. Cada capítulo utilizou métodos e modelos probabilísticos distintos para a descrição e comparação das variáveis de interesse. O Capítulo 2 mostrou que os descritores básicos florestais foram muito diferentes entre as quatro parcelas brasileiras. Estes descritores foram raramente normais nas escalas estudadas e as diferenças entre as parcelas foram mais evidentes quando a variância é considerada, fornecendo informações extras sobre os processos geradores de variabilidade dentro das parcelas. O Capítulo 3 mostrou que a mudança no formato da SAD com o aumento da escala é predominantemente um efeito indireto do tamanho da amostra. Assim, pode haver um efeito de escala, mas esse efeito é pequeno e parece depender do grau de similaridade de espécies entre amostras. No capítulo 4.1, foi necessária uma combinação de quatro diferentes distribuições de probabilidade para descrever a ampla gama de SDD, visto que os modelos candidatos raramente foram adequados para a maioria das espécies. No capítulo 4.2, verificou-se que o crescimento e recrutamento determinam o formato da SDD, o que não aconteceu com a mortalidade. No geral, curvas decrescentes de crescimento por diâmetro (i.e., maior crescimento juvenil) levaram à SDD menos íngremes, enquanto que taxas altas de recrutamento estiveram relacionadas à SDD mais íngremes. Apesar das previsões da teoria de equilíbrio demográfico terem apresentado relações positivas com as SDD observadas, houve muita variação, fazendo com que as previsões fossem pouco confiáveis. No capítulo 5, confirmou-se que a grande maioria das espécies se distribui de maneira agregada no espaço. No entanto, as parcelas apresentaram diferentes padrões de intensidade e tamanho de agregação. As diferenças nestes padrões entre parcelas foram, em geral, similares àquelas encontradas ao comparar populações de uma mesma espécie entre parcelas. Assim, as parcelas permanentes brasileiras apresentaram padrões bem distintos umas das outras, tanto em termos de estrutura quanto de diversidade de espécies, padrões estes que provavelmente foram determinados pelas condições ambientais as quais estas comunidades estão sujeitas. Diferentes padrões também foram encontrados em relação à distribuição espacial das espécies (i.e. frequência, intensidade e tamanho de agregação). Contudo, os resultados sugeriram que estes padrões estiveram mais ligados a heterogeneidade ambiental interna das parcelas do que com condições de clima e solo as quais estas comunidades estão sujeitas. Por outro lado, os padrões de distribuição espacial das espécies parecem ter influenciado os padrões de diversidade das comunidades. Não houve, entretanto, um número suficiente de parcelas sob as diferentes combinações de condições ambientais para testar estas sugestões ou para fazer generalizações para cada formação florestal, sendo necessário o confronto destas sugestões com outros estudos realizados em condições similares. Já na parcela panamenha, foi confirmada a expectativa teórica de que distribuições diamétricas refletem a demografia das espécies, em especial os padrões de crescimento e recrutamento. Mas, houve grande variação entre as espécies, dificultando a inferência precisa de padrões demográficos passados das espécies a partir de SDD atuais. Por fim, a abordagem analítica baseada no ajuste e seleção de modelos por máxima foi uma alternativa viável, flexível e apropriada, principalmente em relação à comparação simultânea de diferentes modelos e à busca de processos por trás dos padrões encontrados. Apesar de algumas limitações de cunho operacional, a abordagem baseado em modelos é uma alternativa adequada para a descrição de comunidades arbóreas, podendo ser utilizada de maneira consorciada com outras abordagens (e.g. testes de hipóteses) para descrever padrões e para gerar ou testar hipóteses sobre esses processos fundamentais que regulam a estrutura e diversidade destas comunidades. / Pattern description - search for trends or non-random arrangements in communities, has a long history in plant ecology. Commonly, the structure and diversity of plant communities are described based on their size class distribution (SDD), spatial distribution (SSD) and species abundance distribution (SAD). This is because there is an underlying assumption that the existing patterns in these community descriptors are signatures of key processes determining their organization and functioning. Thus, pattern description is often the first step to generate or test hypotheses about the processes governing community structure and diversity. Organized in different chapters, the main goal of this thesis was to describe and compare different patterns in Neotropical tree communities and to generate hypotheses about the processes that regulate them. To do so we used an approach based on model selection, which was performed using maximum likelihood. In all chapters the data on tree communities came from different permanent forest plots, four of them of 10.24 ha located in Brazil and another 50 ha located in Panama. In addition to the general introduction of key concepts and techniques used along the thesis (Chapter 1), it was evaluated and compared: (i) the basic forest descriptors (i.e. abundance, basal area and species richness per subplot - Chapter 2), (ii) the SAD and how it varies with increasing sample size and scale (Chapter 3), (iii) the SDD and how it relates to species demography (Chapter 4.1 and 4.2) and, finally, (iv) the SSD and how it varies between plots (Chapter 5). Only the relationship between SDD and species demography o was performed using the Panama plot data, while the remaining chapters relate the four Brazilian plots. Each chapter used different methods and probabilistic models for the description and comparison of the variables of interest. In Chapter 2, it was found that basic forest descriptors were very different between the four Brazilian plots. These descriptors were rarely normal at the studied scales and differences between plots were more evident when variance is accounted for, which seems to provide information on processes generating within-plot variability. Chapter 3 showed that the change in shape of the SAD due to increasing scale is predominantly an indirect effect of sample size. Thus, there may be an effect of the scale, but this effect is minor and seems to depend on the degree of species turnover between samples. In Chapter 4.1, it was shown that the combination of four different probability distributions was necessary to describe the wide range of SDD, since models were rarely appropriate for the majority of tree species. In Chapter 4.2, it was found that growth and recruitment, but not mortality, shape the SDD. On average, decreasing growth-diameter curves (i.e. higher juvenile growth) were associated to less steep SDD, whereas high recruitment rates were related to steeper SDD. Although the predictions of demographic equilibrium theory were positively related to the observed SDD, there was lots of variation, making predictions quite unreliable. In Chapter 5, it was confirmed that the great majority of species had clumped spatial distributions. However, the results of intensity and size of clumps showed that the patterns of aggregation were different among plots. Species shared between two plots generally showed patterns of spatial distribution that matched the patterns found for individual plots. Therefore, the Brazilian plots presented very distinct patterns, both in terms of structure and species diversity, which were most probably determined by the environmental conditions to which these communities are subjected. Different patterns among plots were also found in respect to species spatial distribution (i.e. frequency, intensity and size of aggregation). However, the results suggested that these patterns were more connected to within-plot environmental heterogeneity than with climate and soil conditions. On the other hand, the spatial distribution of the species seems to have influenced the patterns of diversity of communities. There was not, however, a sufficient number of plots under different combinations of environmental conditions to test these suggestions or to make generalizations for each forest type, being necessary to confront these suggestions with other studies conducted in similar conditions. In the Panamanian plot, it was confirmed the theoretical expectation that diameter distributions reflect the demographics of the species, in particular the patterns of growth and recruitment. But there was great variability among species, making it difficult to infer past demographic patterns from current SDD. Finally, the analytical approach based on model fit and selection by maximum likelihood was a viable, flexible and appropriate approach, particularly in respect to the simultaneous comparison of different models and to the search for mechanisms underlying patterns. Despite some more operational limitations, the model-based approach is an appropriate alternative for the description of tree communities and can be jointly used with other approaches (e.g. hypothesis testing) for pattern description and to generate and test hypotheses on the fundamental processes that determine the structure and diversity of these communities.

No description available.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Na Colômbia ocorrem 787 espécies de anfíbios. Por causa da preocupação com o estado de conservação de muitas dessas espécies, tem se sugerido que na Colômbia deveriam-se priorizar as pesquisas em taxonomia e ecologia em regiões sub-amostradas a fim de intensificar o conhecimento e conservação dos anfíbios colombianos. Baseados em uma análise cienciométrica de 319 trabalhos sobre a ecologia dos anfíbios colombianos publicados entre 1840 e 2014 (No Capítulo 1), identificamos as tendências nos esforços realizados em distintos temas de pesquisa, e a distribuição regional e taxonômica desses estudos. A maioria dos estudos (67%) foi realizada na região Andina colombiana em comparação com outras regiões naturais da Colômbia. Apenas 46% das espécies de anfíbios ocorrendo na Colômbia foi tratada nos estudos analizados, e a maioria (58%) delas é da região Andina. Entre as publicações analizadas identificamos 14 temas de pesquisa em ecologia, dos quais ecologia reprodutiva (26%), conservação de espécies (23%) e dieta (14%) foram os mais pesquisados. Nossos dados mostraram que na Colômbia há um considerável avanço na pesquisa sobre a ecologia dos anfíbios do país, mas ainda são necessários esforços para cobrir muitos vazios de informação para muitas regiões e para muitas espécies de anfíbios que possuem dados incipientes. No sudoeste da Cordilheira Ocidental colombiana há pouca informação ecológica sobre os anfíbios ali ocorrendo. A fim de saber alguns aspectos ecológicos dessas espécies, desenvolvimos três estudos sobre a diversidade e ecologia de anfíbios presentes na Reserva Natural Río Ñambí (a seguir RNRÑ). No Capítulo 2 apresentamos uma análise sistemática do gênero Andinophryne (Família Bufonidae), composto por três espécies, A. atelopoides, A. colomai (presente na RNRÑ) e A. olallai. As filogenias mostraram que Andinophryne está incorporado dentro de Rhaebo. Portanto, sinonimizamos Andinophryne sob Rhaebo e discutimos as sinapomorfias morfológicas putativas para Rhaebo. Além, fornecemos informações ecológicas e sobre o estado de conservação das três espécies incluídas na nova combinação taxonômica. No Capítulo 3 apresentamos uma lista de 19 espécies de anfíbios pertencentes a oito famílias, com uma dominância numérica da família Craugastoridae e do gênero Pristimantis. As espécies com a maior abundância relativa (> 25%) foram Pristimantis labiosus e P. verecundus. Sete diferentes modos de reprodução foram reconhecidos, com a maioria das espécies (68%) possuindo desenvolvimento direto de ovos. Cinco (26%) das espécies registradas estão classificadas dentro das categorias de maior ameaça de extinção. Reportamos para sete espécies a extensão da faixa de distribuição geográfica latitudinal na Colômbia. No Capítulo 4 comparamos a dieta de jovens e adultos de P. labiosus para identificar se houve uma mudança ontogenética no tamanho de presa consumido com o aumento na largura da boca. A dieta foi composta por 19 categorias de presas (> artrópodes), com as duas classes de idade consumindo um similar espectro de categorias. Os jovens têm um nicho trófico maior (0,45) do que os adultos (0,25), com uma sobreposição de nicho relativamente baixa (0,39) entre eles. Apesar da diferencia na largura da boca entre jovens e adultos, não houve uma correspondente mudança ontogenética no tamanho de presa consumida. Consideramos P. labiosus como um predador generalista que parece consumer uma ampla gama de tipos e tamanhos de presas / Colombia harbors 787 species of amphibians. Because of concerns with the conservation status of many of these species, it has been suggested that in Colombia should prioritize research in taxonomy and ecology in undersampled regions in order to enhance the knowledge and conservation of Colombian amphibians. Based on a scientometric analysis of 319 works on ecology of Colombian amphibians published between 1840 and 2014 (Chapter 1), we identified trends in the efforts made in different research topics, and both regional and taxonomic distribution of these studies. Most studies (67%) was conducted in the Colombian Andean region compared to other natural regions of Colombia. Only 46% of amphibian species occurring in Colombia was included in the reviewed studies, and the most of them (58%) is from the Andean region. Among the reviewed publications, we identified 14 research topics in ecology, of which reproductive ecology (26%), species conservation (23%), and diet (14%) were the most investigated. Our data showed that in Colombia, there is a considerable advance in research on amphibian ecology, but we need further efforts to fill many gaps in information for many regions and for many amphibian species possessing incipient data. In southwestern of the Colombian western Andes there is little information about the species occurring there. In order to know some ecological aspects of these species, we conducted three studies on diversity and ecology of the amphibians present in the Reserva Natural Río Ñambí (hereafter RNRÑ). In the Chapter 2, we show an analysis of the systematics of the genus Andinophryne (Family Bufonidae), composed by three species, A. atelopoides, A. colomai (present in the RNRÑ) and A. olallai. The phylogenies showed that Andinophryne is embedded within Rhaebo. Therefore, we synonymize Andinophryne under Rhaebo and we discussed the putative morphological synapomorphies for Rhaebo. In addition, we provide ecological informations and on the conservation status of the three species included in the new taxonomic combination. In the Chapter 3, we show a list of 19 amphibian species from eight families, with a numerical dominance of the Family Craugastoridae and of the genus Pristimantis. The species with the highest relative abundance (>25%) were Pristimantis labiosus and P. verecundus. Seven different reproductive modes were recognized, with most species (68%) presented direct development of eggs. Five (26%) of the species recorded are classified in the categories of greatest threat of extinction. We report for seven species an extension of the latitudinal distribution range in Colombia. In the Chapter 4, we compared the diet of juveniles and adults of P. labiosus in order to identify if there was an ontogenetic shift in the prey size consumed as mouth width increases. The diet was composed of 19 prey categories (> arthropods), and the two age-classes consumed a similar array of prey categories. Juveniles had a broader trophic niche (0.57) than adults (0.25), with a relatively low trophic overlap among them (0.39). Although we found differences in mouth width between juveniles and adults, we did not observe a corresponding ontogenetic shift in prey size consumption. We consider that P. labiosus is a generalist predator, consuming a wide range of prey types and sizes

<div>Agricultural headwater streams in the Midwestern United States are subject to contaminants from fields, increased sedimentation, and degradation of natural habitat. Previous research has shown that physical instream habitat degradation better explained variation in fish community structure than water chemistry. However, these studies did not include total suspended solids (TSS), which are considered a major freshwater contaminant. The objective of this study is to determine whether total suspended solids better explains fish community structure than other variables in agricultural headwater streams. Mixed linear effects modeling was used to determine the set of independent variables that best predicts each of the fish response variables of species richness, Shannon diversity index, fish density, and index of biotic integrity. Standardized coefficients were used to determine which independent variable in each of the models had the largest influence on fish response metrics. The set of independent variables that best explained species richness were mean total suspended solids, imidacloprid, discharge, and substrate richness. Shannon diversity index was explained best by the combination of maximum total suspended solids, mean total suspended solids, atrazine, total nitrogen, and discharge. Fish density was explained best by the percentage of silt and clay, dissolved oxygen, the percentage of canopy cover, cover type richness, and discharge. IBI was explained best by the combination of the percentage of silt and clay, total phosphorus, mean total suspended solids, and dissolved oxygen. Total suspended solids was the most influential independent variable for fish species richness and Shannon diversity, however the percentage of silt and clay in benthic sediments was the most influential independent variable for fish density and IBI. Results also indicate discharge and total phosphorus as being influential to fish community metrics. The results from this study suggest that models containing a combination of different types of independent variables best explain fish community structure. This study supports the use of conservation and restoration practices that reduce total suspended solids and the amount of silt and clay present in bed sediments to increase fish community integrity of agricultural headwater streams of the Midwestern United States.</div>