Diss. (sammanfattning) Linköping : Univ., 2002. / Härtill 8 uppsatser.

Les staphylocoques à coagulase négative (SCN) sont des bactéries fréquemment isolées de viandes et de produits carnés. Parmi les SCN, seules les deux espèces S. xylosus et S. carnosus sont utilisées comme ferments dans les produits carnés. Dans ces produits, il est d’usage d’ajouter du nitrate/nitrite pour le développement de la couleur typique des salaisons. Les staphylocoques participent au développement et à la stabilité de la couleur en réduisant le nitrate en nitrite via leur activité nitrate réductase. Le nitrite est chimiquement réduit en monoxyde d’azote (NO), qui se lie au fer de l’hème de la myoglobine pour former la nitrosomyoglobine, un pigment rouge et stable. Le contexte actuel vise à réduire l’utilisation du nitrate/nitrite afin de limiter le risque de formation de composés N-nitrosés tels que les nitrosamines. Il a été montré que les bactéries pouvaient synthétiser du NO à partir d’une oxyde nitrique synthase (NOS). Le gène nos a été identifié dans une collection de souches de SCN isolées de viande. La séquence protéique de la NOS est fortement conservée entre les espèces. Pour mettre en évidence la production de NO, un test basé sur la conversion de metmyoglobine en pigments rouges, l’oxymyoglobine et la nitrosomyoglobine, a été utilisé. Le nitrosohème contenu dans la nitrosomyoglobine a été extrait. La formation du nitrosohème, chez un mutant de délétion du gène nos de la souche S. xylosus C2a, est fortement réduite en condition limitée en oxygène et abolie en condition aérobie. De plus, la NOS de S. xylosus C2a est impliquée dans la réponse à un stress oxydant. Afin de déterminer le potentiel de production de NO de souches de S. xylosus et d’autres espèces de SCN, leur capacité à former de la nitrosomyoglobine a été évaluée. Cette formation est espèce- et souche-dépendante. Les souches de S. xylosus ont un potentiel de production de NO plus élevé que les souches des autres espèces. Ce test a également révélé que certaines souches de SCN sont capables de former de l’oxymyoglobine à partir de la metmyoglobine.Cette étude a permis de mettre en évidence l’implication de la NOS dans la production de NO chez S. xylosus et la capacité de formation de nitrosomyoglobine chez d’autres souches de SCN isolées de viande. / Coagulase Negative Staphylococci (CNS) are usually isolated from meat and meat products. In meat products, S. xylosus and S. carnosus are the only CNS species used as meat starter cultures. In these products, nitrate and nitrite are used as additives where they contribute to the development of the typical red coloration. Staphylococci contribute to the development and stability of colour through their nitrate reductase activity that reduces nitrate to nitrite. Nitrite is chemically reduced to nitric oxide (NO) which is able to bind the ferrous-heme iron to form the stable bright red nitrosomyoglobin pigment. However, the safety regarding the use of these additives on meat products has been questioned as nitrite is able to form N-nitroso compounds such as nitrosamines. Some bacteria are able to synthesize NO by nitric oxide synthase (NOS). The nos gene was identified in a collection of CNS isolated from meat. The NOS sequence is well conserved between species. NO production has been investigated based on the formation of red myoglobin derivatives from metmyoglobin such as oxymyoglobin and nitrosomyoglobin. Subsequently, the nitrosoheme was extracted from nitrosomyoglobin. Nitrosoheme formation was reduced under limited oxygenated condition while it was abolished under aerobic condition in a S. xylosus C2a nos deleted mutant. Moreover, NOS is involved in oxidative stress resistance in S. xylosus C2a. In order to determine the potential of NO production among other strains of S. xylosus and other CNS species, their potential to form nitrosomyoglobin was evaluated. Nitrosomyoglobin formation is strain- and species-dependent. This assay has also revealed that several CNS strains are able to form oxymyoglobin from metmyoglobin.This study has demonstrated NOS-dependent NO production in S. xylosus and the ability of CNS isolated from meat to form nitrosomyoglobin.

Les stilbènes sont les métabolites de défense majeurs de la vigne, qui sont également connus pour leurs nombreuses propriétés pharmacologiques. Tirant parti du récent séquençage du génome de la vigne, l’objectif de ce travail est de caractériser les familles de gènes impliqués dans la biosynthèse des stilbènes chez la vigne, et de préciser leur rôle dans les défenses contre le mildiou (Plasmopara viticola). La première étape de la biosynthèse des stilbènes est catalysée par la stilbène synthase (STS), pour former le resvératrol. L’analyse détaillée du génome de la vigne a permis d’identifier 48 gènes STS, dont 32 gènes potentiellement fonctionnels. La caractérisation fonctionnelle d’une sélection de gènes représentatifs de la diversité de la famille suggère que l’ensemble des 32 gènes STS code pour des protéines ayant réellement une activité stilbène synthase. L’analyse évolutive des gènes STS montre que la famille est très contrainte, sans trace de néo-fonctionnalisation. La famille des STS de la vigne représente donc un exemple unique d’une famille de plus de 30 gènes codant pour des protéines de fonction identique, et la signification biologique de cette expansion est discutée. Une seconde enzyme importante du métabolisme des stilbènes est la resvératrol O-méthyltransférase (ROMT). La ROMT est impliquée dans la méthylation du resvératrol pour former le ptérostilbène, un composé hautement fongitoxique qui pourrait jouer un rôle important dans les mécanismes de défenses de la vigne. Notre analyse de la famille ROMT montre qu’elle est constituée de 17 gènes, dont deux seulement (VvROMT1 et VvROMT2) semblent impliqués dans la synthèse de ptérostilbène. L’expression de ces deux gènes est induite suite à une infection par P. viticola au niveau des feuilles de vigne. Deux autres gènes de la famille, VvROMT12 et VvROMT13, sont exprimés constitutivement au niveau des racines, et ne semblent pas répondre au stress. Des analyses métabolomiques sur des plants de Nicotiana benthamiana transgéniques exprimant ces deux ROMT ainsi que des tests enzymatiques in vitro ont été réalisés afin de déterminer la fonction des gènes ROMT12 et 13. L’ensemble de ces résultats fait apparaître une amplification remarquable des gènes impliqués dans la synthèse des stilbènes chez la vigne et ouvrent la voie à l’étude détaillée de la régulation de cette voie importante du métabolisme de défense de la vigne. / Stilbenes are major defense metabolites in grapevine (Vitis vinifera), which are known for their many pharmacological properties. Taking advantage of the recent sequencing of the grapevine genome, the aim of this work is to characterize genes families involved in stilbene biosynthesis, in order to clarify the role of these defense compounds in the interaction with downy mildew (Plasmopara viticola). The first step of stilbene biosynthesis is catalyzed by stilbene synthase (STS), to yield resveratrol. Our annotation of the STS gene family identified 48 STS genes, including at least 32 potentially functional ones. This unusual expansion of the STS family is original, since it is not found in other stilbene-producing plants. Functional characterization of a selection of STS proteins indicates that all STS genes are likely to encode enzymes with STS activity. Evolutionary analysis of the STS gene family revealed that STS evolution is dominated by purifying selection, with no evidence for neofunctionalization. STS family then represents a unique example a family of more than 30 genes encoding proteins with identical function, and the biological significance of this amplification is discussed. A second important enzyme in stilbene metabolism is resveratrol O-methyltransferase (ROMT), involved in the methylation of resveratrol to yield pterostilbene. This highly fungitoxic compound is believed to play an important role in grapevine defense metabolism. Our analysis of the ROMT family identified 17 genes, two of them only (VvROMT1 and VvROMT2) being involved in pterostilbene biosynthesis. qPCR analyses have shown an induction of the expression of these two genes after an inoculation of P. viticola on grapevine leaves. Two others genes, VvROMT12 and VvROMT13, are constitutively expressed in grapevine roots, and do not seem to respond to stress. Metabolomic analysis on transgenic Nicotiana benthamiana plants expressing these two ROMT genes, together with in vitro enzymatic assays, have been performed in order to determine the function of ROMT12 and ROMT 13. All together, these results show a remarkable amplification of genes involved in stilbene biosynthesis in grapevine. This work paves the way for detailed analyses of the regulation of this important pathway of grapevine defense metabolism.

Orientadora: Profª. Drª. Hana Paula Masuda / Coorientador: Prof. Dr. Danilo da Cruz Centeno / Dissertação (mestrado) - Universidade Federal do ABC, Programa de Pós-Graduação em Biotecnociência, São Bernardo do Campo, 2018. / Os oligossacarídeos da série da rafinose (OSRs) são carboidratos formados pela adição sequencial de um grupo galactosil, geralmente doado por uma molécula de galactinol, à molécula de sacarose. Essa via é regulada principalmente por três enzimas. A galactinol sintase (GOLS) que é responsável pela síntese de galactinol. A rafinose sintase (RAFS) que transfere o resíduo galactosil do galactinol à molécula de sacarose dando origem a rafinose. E a estaquiose sintase (STS) que é responsável pela transferência de galactosil para a rafinose, dando origem a estaquiose. Esses açúcares desempenham importantes papéis fisiológicos nas células vegetais e têm sido considerados como moléculas chave na resposta ao estresse abiótico. Cada enzima envolvida no metabolismo dos OSRs é codificada por uma família de gênica. No entanto, ainda são escassos os trabalhos que apresentem descrições sistemáticas dos genes e suas relações evolutivas nas espécies vegetais. Os poucos trabalhos disponíveis focam nos genes que codificam GOLS, frequentemente considerada a enzima-chave da via. O objetivo deste trabalho foi estudar a diversidade e evolução dos genes rafs e sts em monocotiledôneas, para ampliar o conhecimento sobre os genes nessas espécies. Foram investigados genes rafs e sts em oito espécies vegetais, seis monocotiledôneas e duas dicotiledôneas. Também foram produzidas análises filogenéticas, de ortologia e a caracterização dos domínios proteicos nos genes identificados. Os resultados mostraram que RAFS e STS existem em grande diversidade e que são codificadas por vários genes putativos. As árvores filogenéticas permitiram diferenciar rafs de sts, sugerir relações evolutivas entre os genes e identificar diferentes grupos nessa família gênica. Análises de sintenia indicam a existência de genes ortólogos e duplicações in tandem. Por fim, a análise dos domínios proteicos confirmou a similaridade entre rafs e sts. Como conclusão, essa dissertação expande o conhecimento a respeito dos genes codificadores da via do OSRs, fornece informações para futuros trabalhos com foco em biotecnologia e contribui com a descrição das informações genômicas obtidas nos projetos de sequenciamento genético de espécies vegetais. / The raffinose series oligosaccharides (RFOs) are small carbohydrates synthetized by the sequential addition of a galactosil group, usually donated by a galactinol to sucrose. This metabolic pathway is regulated, among others, by the galactinol synthase (GOLS) enzyme, responsible for the synthesis of galactinol; the raffinose synthase (RAFS), responsible for the transfer of a galactosil group to sucrose, synthetizing rafinose, and; stachyose synthase (STS), responsible for the transfer of another galactosil group to raffinose, thus producing stachyose. These sugars play important physiological roles on plant cells and are considered key molecules in the response to abiotic stress. The enzymes involved on the RFOs metabolism exhibit a large number of functional genes. However, few studies present systematic descriptions of these genes and their evolutionary relationships on plant species. The few available studies focused on the genes that code for GOLS, frequently considered the key enzyme of RFOs metabolic pathway. The objective of this study was to understand the diversity and evolution of the rafs and sts genes in monocot species, to extend the knowledge on these plant genes. Rafs and sts genes were surveyed in eight plant species, six monocot and two dicot species. Phylogenetic and synteny analyses were performed, as well as, the characterization of the protein domains. The results showed that a large number of putative genes codifies both RAFS and STS, indicating that this gene family have a high diversity in plant genomes. The phylogenetic trees allowed proposing the evolutionary relationships between those genes and suggested the existence of different sequence groups. Synteny analyses showed groups of orthologue genes and in tandem gene duplications. Finally, the protein domain analyses corroborated the high similarity between rafs and sts. In conclusion, this work expands the knowledge about RFOs metabolism genes, provided information for further biotechnology studies and contributes to the description of sequence data from genomics projects.

Orientadores: Marcia Regina Braga, Marcia Maria Camargo de Morais / Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-26T04:21:10Z (GMT). No. of bitstreams: 1 Galvao_DaianeFelbergAntunes_D.pdf: 15313845 bytes, checksum: aa218f685858df886eb7062bfe4337dc (MD5) Previous issue date: 2014 / Resumo: Fruto-oligossacarídeos (FOS) são frutanos de baixo peso molecular produzidos por microorganismos. O interesse em FOS vem aumentando uma vez que eles são considerados ingredientes funcionais benéficos à saúde humana. Com o objetivo de analisar como a produção de FOS e a composição da parede celular de fungos filamentosos é afetada pela fonte de carbono, os fungos Fusarium solani (URM 3338) e Neocosmospora vasinfecta (URM 3329) foram cultivados em meios contendo cinco fontes de carbono diferentes (sacarose, inulina, glucose, frutose ou glucose mais frutose, todos a 1%) e coletas foram realizadas aos 5, 10 e 15 dias de crescimento. A partir do meio de cultivo filtrado foram analisados o pH, teores de açúcar total, açúcares redutores e proteínas, a presença de FOS e atividades enzimáticas invertásica e inulinásica. A partir do micélio, a biomassa foi quantificada e a parede celular foi isolada e sua composição em açúcares neutros, ácidos urônicos e quitina analisada. Foi avaliada também a expressão relativa de genes de síntese de parede celular b-1,3-glucano sintase e quitina sintases. Os dois fungos utilizaram todas as fontes de carbono crescendo nas diferentes condições. Atividade de hidrólise foi detectada no meio contendo sacarose ou inulina para o fungo F. solani, gerando glucose, frutose e fruto-oligossacarideos como produtos havendo utilização dos monossacarídeos. O micélio deste fungo apresentou alterações visíveis no crescimento em meio sólido apenas no meio com frutose, mas foi observada igual quantidade de quitina da parede celular deste fungo quando crescido por cinco dias em sacarose e inulina, mas em menor quantidade com relação aos demais meios. As análises de expressão relativa de genes mostraram indução do gene da b-1,3-glucano sintase e repressão do gene quitina sintase 5 em sacarose e inulina com relação a condição frutose. Estes dados sugerem que a alteração na composição da parede celular do F. solani pode ter relação com a secreção de enzimas nos meios sacarose e inulina. Para N. vasinfecta, quando crescido em sacarose foi observada atividade de transfrutosilação, com a liberação de glucose e síntese de 1-cestose (FOS) no meio. Transfrutosilação também foi observada no meio que teve inulina como fonte de carbono. O micélio deste fungo apresentou alterações visíveis em meio sólido nas condições frutose e inulina, sendo mais hialino do que nas demais condições. A quantidade de quitina na parede celular deste fungo crescido por cinco dias foi maior nas condições frutose e inulina com relação às demais. As análises de expressão relativa de genes mostraram indução dos genes de quitina sintase 4 e 5 nestas duas condições em relação à sacarose. A partir dos resultados, pode-se concluir que as fontes de carbono oferecidas foram utilizadas pelos fungos, que as mesmas afetaram a composição de açúcares da parede celular e a expressão de genes de síntese de componentes da parede e que estes fungos são promissores para a produção de FOS, pois possuem enzimas que hidrolisam a inulina, além de enzimas que sintetizam oligossacarídeos a partir de sacarose por transfrutosilação / Abstract: Fructooligosaccharides (FOS) are low molecular weight fructans produced by microbes and plants. Interest in FOS has been increasing since they are considered as functional food ingredients with benefical effects in human nutrition. With the aim of examining how the production of FOS and the composition of the cell wall of filamentous fungi are affected by the carbon source, Fusarium solani (URM 3338) and Neocosmospora vasinfecta (URM 3329) were cultured in media containing five different carbon sources (sucrose, inulin, glucose, fructose or glucose plus fructose) and samples were taken at 5, 10 and 15 days of growth. From the filtered culture medium, pH, total carbohydrates, reducing sugars and proteins, the presence of FOS and inulinase and invertase activities were analyzed. Mycelium biomass was measured and the cell wall was isolated and its composition in neutral sugars, uronic acids and chitin analyzed. The expression of b-1,3-glucan synthase and chitin synthase genes was also evaluated. Both fungi utilized all the carbon sources for growing. In sucrose- and inulin-containing media, hydrolytic activity was detected in F. solani generating glucose, fructose and FOS as products. When grown on solid culture media, visible changes were observed in mycelium of this fungus only in fructose, but the amount of chitin in the cell wall was higher in the sucrose and inulin-containing media when compared to other carbon sources. The expression b-1,3-glucan synthase gene was induced and chitin synthase 5 gene repressed on sucrose and inulin media. N. vasinfecta showed transfructosilation activity when was grown in sucrose, with release of glucose and synthesis of 1-kestose (FOS) in the culture medium. Transfructosilation was also observed in the inulin-containing medium. The mycelium showed visible changes when the fungus was cultured in solid medium with fructose or inulin as carbon sources. The amount of chitin in the cell wall of this fungus when grown for five days in inulin or fructose was higher in comparison to other carbon sources. The analysis of gene expression showed induction of chitin synthase 4 and 5 genes in these two conditions in relation to sucrose. From the results it can be concluded that the carbon sources affected growth, enzymic activity, composition of the cell wall and gene expression in F. solani and N. vasinfecta, and that these fungi are promising organisms for FOS production since they secrete enzymes that hydrolyze inulin or synthesize oligosaccharides from sucrose by transfructosylation / Doutorado / Biologia Celular / Doutora em Biologia Celular e Estrutural

L’hyperaldostéronisme primaire [HAP] résulte d’une hypersécrétion d’aldostérone d’origine surrénale. La compréhension de la pathogénie de cette maladie, dont la prévalence est estimée à 10% de la population hypertendue, est essentielle pour le développement de nouveaux outils diagnostiques et thérapeutiques. Dans ce contexte, ce travail de doctorat avait pour but d’identifier de nouvelles orientations thérapeutiques en testant un inhibiteur de l’aldostérone synthase et de rechercher de nouveaux marqueurs diagnostiques par l’étude du profil d’expression des microARN [miRs]. Dans une étude de phase II, 14 patients présentant un HAP ont reçu un inhibiteur de l’aldostérone synthase : le LCI699 pendant 4 semaines. Nous avons ainsi pu montrer que le LCI699 permet de diminuer les concentrations d’aldostérone de 70 à 80% et de normaliser la kaliémie chez tous les patients. En revanche, il n’a qu’un effet modéré sur la pression artérielle et sur l’élévation des concentrations de rénine, et n’est que partiellement sélectif pour l’aldostérone synthase. De plus son efficacité est moindre que celle de l’éplérénone, antagoniste minéralocorticoide administré aux mêmes patients au décours du LCI699. Nous avons ensuite étudié l’expression de 754 miRs dans des adénomes produisant de l’aldostérone [APA] et dans des surrénales contrôles. L’hypothèse était qu’une dérégulation de leur expression pouvait être impliquée dans la tumorigénèse et la surproduction d’aldostérone. L’objectif secondaire était d’identifier des miRs utilisables en tant que biomarqueurs. Cette analyse par carte microfluidique a révélé que 27 miRs sont significativement sous exprimés dans les APA et un seul miR est surexprimé. L’expression différentielle de deux de ces miRs : miR 137 et miR 375 a pu être confirmée dans une cohorte de validation de 36 APA: Des résultats préliminaires in vitro indiquent que le miR 375 pourrait induire une diminution de la synthèse d’aldostérone. Enfin, l’analyse de l’expression de ces miRs dans le plasma a permis de mettre en évidence une sous-expression du miR 375 chez les patients atteints d’HAP en comparaison à des sujets sains. En conclusion, le blocage de la biosynthèse de l’aldostérone représente une nouvelle option thérapeutiques, cependant il est nécessaire de développer une seconde génération de molécules : plus puissantes et plus sélectives. Les analyses effectuées sur les APA ouvrent de nouvelles perspectives pour l’identification de nouveaux biomarqueurs tels que les miRs circulants / Primary aldosteronism [PA] results from the hypersecretion of aldosterone by the adrenals. Understanding the pathogenesis of the disease is essential for identifying new diagnostic and therapeutic tools. In this context the purpose of my PHD was to investigate the effects of an aldosterone synthase inhibitor and second to investigate new diagnostic options by the extensive study of microRNA [miRNA]. In a phase II clinical study, 14 patients with PA were administered an aldosterone synthase inhibitor: LCI699. Four weeks of treatment lead to a 70 to 80% decrease in aldosterone concentration, associated with the cure of hypokalemia. However, there was only a mild effect on blood pressure and volemia (reflected by renin concentration). In addition, these results demonstrated an incomplete selectivity of LCI699 for aldosterone synthase in vivo, and showed that LCI699 is less potent than the blocker of the mineralocorticoid receptor: eplerenone . We also characterized the miRNA profile of Aldosterone producing adenomas [APA]. The hypothesis was that a dysregulation of the expression of miRNA could induce tumorigenesis and increase the production of aldosterone. The secondary aim of the study was to identify miRNA that could be measured in plasma as biomarkers. miRNA profiling of 754 miRNA using quantitative PCR Low Density array, revealed 28 miRNA whose expression was significantly different in APA. The differential expression of two miRNA: miRNA 137 and miRNA 375 was confirmed in a validation cohort of 36 APA. Preliminary in vitro studies showed that up-regulation of intracellular levels of miR 375 may reduce aldosterone secretion in H295R cells. Lastly, circulating plasma levels of miR 375 are differentially expressed between patients with PA and healthy volunteers. In conclusion, the blocking of the aldosterone pathway in hypertensive patients is a novel therapeutic option but second-generation drugs more potent and more selective of aldosterone synthase are required. Profiling miRNA in APA offers new prospect for the development of biomarkers, such as measuring circulating miRNA in plasma

La Mort Cellulaire Programmée (MCP) est un processus essentiel pour plusieurs aspects de la vie des plantes, incluant le développement et les réponses aux stress. Des analyses génétiques ont permis d’identifier plusieurs acteurs clés de la MCP chez Arabidopsis thaliana,, dont l’enzyme MIPS1, qui catalyse une étape limitante de la biosynthèse du myo-inositol (MI), composé cellulaire majeur à l’origine de nombreux dérivés. Une des caractéristiques les plus importantes du mutant mips1, désactivé pour cette protéine, est l’apparition de lésions sur les feuilles de rosette, dépendante des conditions lumineuses et due à de la MCP impliquant la voie de l’acide salicylique. Ces données avaient permis de révéler un rôle du MI, ou de ses dérivés, dans le contrôle de la MCP. Mon travail de thèse a consisté à rechercher et à caractériser des suppresseurs du mutant mips1 par deux approches complémentaires : une approche gène candidat par comparaison de transcriptome et une stratégie de génétique directe suite au crible de mutations secondaires extra-géniques abolissant le phénotype de mort cellulaire de mips1. Les analyses effectuées sur différents suppresseurs ont mis en évidence l’implication de plusieurs facteurs dans la MCP, tels que le facteur de polyadénylation CPSF30, d’une héxokinase ou encore de la protéine PCB2 intervenant dans la biosynthèse de la chlorophylle. La caractérisation de ces suppresseurs a permis de démontrer l’importance de différentes voies comme la maturation des ARNm, le métabolisme carboné primaire ou l’activité chloroplastique dans le contrôle de la MCP dépendante de l’accumulation de MI. Ce travail apporte de nombreuses perspectives, visant à mieux appréhender les différentes voies de régulation de la MCP indispensables pour un développement correct et pour faire face à des stress biotiques et abiotiques chez les plantes. / Programmed cell death (PCD) is essential for several aspects of plant life, including development and stress responses. Mutational analyses have identified several key PCD components in Arabidopsis thaliana, as the enzyme MIPS1 catalysing the limiting step of myo-inositol (MI) synthesis, crucial cellular compound at the root of many derivatives. One of the most striking features of mips1, disrupted for this protein, is the light-dependent formation of lesions on leaves due to Salicylic Acid (SA)-dependent PCD, revealing roles for MI or inositol derivatives in the regulation of PCD. My thesis work was to find and characterize suppressor of mips1 mutant using two complementary approaches: a gene candidate approach by transcriptomic comparisons and a strategy of direct genetic by screening for extra genic secondary mutations that abolish mips1 cell death phenotype. Analysis of different suppressors revealed the involvement of several factors in MCP, such as the polyadenylation factor CPSF30, a hexokinase or the protein PCB2 operating in chlorophyll biosynthesis. Characterization of these suppressors allowed us to demonstrate crucial role of functions as mRNA maturation, primary carbohydrate metabolism or chloroplastic activity in the regulation of MCP depending on MI accumulation. This work brings many opportunities, to better understand the different regulatory pathways of PCD essential for proper development and to cope with biotic and abiotic stress in plants.

Le diabète de type 2, défini par une hyperglycémie chronique, résulte d'un déficit de la sécrétion d'insuline et d'une insulinorésistance. Durant le prédiabète qui précède la maladie, la cellule ß pancréatique est capable d'établir une hyperactivité sécrétoire compensatrice de l'insulinorésistance. Les NO synthases neuronales (nNOS) pancréatique et musculaire contrôlent respectivement la sécrétion d'insuline induite par le glucose dans la cellule ß et la force contractile, la captation et l'utilisation du glucose dans les myocytes. Dans le modèle génétique du rat obèse Zucker fa/fa mimant l'état prédiabétique associant un hyperinsulinisme et une insulinorésistance, nous avons retrouvé au niveau de la cellule ß une forte augmentation du complexe entre la nNOS et son inhibiteur endogène PIN (Protein Inhibitor of Neuronal NOS) au niveau des granules de sécrétion d'insuline. Ce complexe, grâce à une interaction accrue avec la myosine V, participe à l'hyperactivité sécrétoire de la cellule ß pancréatique. En effet, des molécules inhibant spécifiquement l'interaction nNOS-PIN permettent de rétablir, chez le rat fa/fa, une sécrétion d'insuline normale. Au niveau musculaire, nous avons observé, dans ce modèle animal, une diminution d'expression de la nNOS sans variation du taux d'ARNm, traduisant une protéolyse accrue de la protéine. L'inhibition de la dégradation protéasomale permet de restaurer l'expression et l'activité catalytique de la nNOS dans le muscle squelettique. Cette perte de fonctionnalité de l'enzyme participerait à l'installation de l'insulinorésistance. Ces travaux ont permis de valider la nNOS comme une cible potentielle pour la prévention du diabète de type 2. / Type 2 diabetes is a chronic disorder defined by chronic hyperglycemia resulting from a deficiency of insulin secretion and an insulin resistance in peripheral tissues and liver. A long lasting silent phase, called prediabetes, precedes the disease and in which pancreatic ß cell is able to improve insulin secretion to compensate for the insulin resistance. The pancreatic and muscular neuronal nitric oxide synthases (nNOS) control respectively glucose-induced insulin secretion in pancreatic ß cell and glucose uptake and utilization in myocytes. In the genetic model of obese Zucker fa/fa rat mimicking the prediabetic state characterized by hyperinsulinemia and insulin resistance, we found a high increase in the amount of the complex between nNOS and its endogenous inhibitor PIN (Protein Inhibitor of Neuronal NOS) at the level of insulin secretory granules within the ß cell. This complex, through an increased interaction with myosin V, participates in the secretory hyperactivity of the pancreatic ß cell, observed in this model of prediabetes. Indeed, molecules that specifically inhibit nNOS-PIN interaction allow to restore a normal insulin secretion in fa/fa rat. In skeletal muscle of this model, we observed a decreased expression of nNOS protein with no change in mRNA levels, suggesting an increased proteolysis of the protein. Inhibition of proteasomal degradation restores the expression and the catalytic activity of nNOS in skeletal muscle. Thus, this loss of functionality of the enzyme could participate in the installation of insulin resistance. This work therefore validated nNOS as a potential target for the prevention of type 2 diabetes.

Acetyl-CoA Synthase (ACS) katalysiert die Reaktion eines Methylkations, Kohlenstoffmonoxid und CoA zu Acetyl-CoA. Das aktive Zentrum von ACS ist ein Ni,Ni-[4Fe4S]-Cluster (A-cluster), in dem zwei Nickel-Ionen mit einem kubanen [4Fe4S]-Cluster verbrückt sind. An der Biosynthese von komplexen Metallclustern sind in der Regel mehrere akzessorische Proteine, auch Maturationsfaktoren genannt, beteiligt. Die Biosynthese des A-Clusters wurde bisher noch nicht genauer untersucht und es war nicht bekannt welche Proteine die Biosynthese des A-Clusters katalysieren. In dieser Arbeit wurde das Protein AcsF als Maturationsfaktor der ACS identifiziert und seine biochemischen und strukturellen Eigenschaften wurden charakterisiert. AcsF und apoACS aus Carboxydothermus hydrogenoformans bilden einen stabilen Komplex, der zwei Nickel-Ionen binden kann. ApoACS hingegen kann unter den gleichen Bedingungen im Durchschnitt nur weniger als ein Nickel-Ion binden. Der Ni-ACS-AcsF Komplex, an dem zwei Nickel-Ionen gebunden sind, ist katalytisch jedoch nicht aktiv. Erst durch Zugabe von Mg-ATP kann die inaktive Spezies in eine aktive Form überführt werden. AcsF-Proteine gehören zur gleichen Protein-Familie wie CooC-Proteine, die Maturationsfaktoren der Kohlenstoffmonoxid Dehydrogenase. Ein Sequenzähnlichkeitsnetzwerk konnte zeigen, dass AcsF- und CooC-Proteine jeweils eine eigene Untergruppe in dieser Familie bilden. Die AcsF-Proteine von C. hydrogenoformans und Archaeoglobus fulgidus wurden kristallisiert und deren Kristallstrukturen gelöst. Durch einen Vergleich der Strukturen von AcsF mit den Strukturen von zwei CooC-Proteinen konnte aufgedeckt werden, dass die größten strukturellen Unterschiede zwischen AcsF- und CooC-Proteinen zwischem dem Switch I Motif und dem CXC Motif zu finden sind. / Acetyl-CoA synthase (ACS) catalyzes the reaction of a methyl cation, carbon monoxide and CoA to acetyl-CoA. The active site of ACS is a Ni,Ni-[4Fe4S] cluster (A-cluster), in which two nickel ions are bridged to a cubane-type [4Fe4S] cluster. Usually, several accessory proteins are involved in the biosynthesis of such complex metal clusters. However, the biosynthesis of the A-cluster had not yet been investigated and it was not known which accessory proteins take part in its assembly. In this work, the protein AcsF was identified as a maturation factor of ACS, and its biochemical and structural properties were characterized. AcsF and apoACS from Carboxydothermus hydrogenoformans form a stabile complex, that can bind two nickel ions. ApoACS alone, on the other hand, binds on average only less than one nickel ion under the same conditions. The Ni-ACS-AcsF complex, that contains two nickel ions, is not active, but the addition of Mg-ATP converts the inactive species into an active form. AcsF proteins belong to the same protein family as CooC proteins, the maturation factors of carbon monoxide dehydrogenase. A sequence similarity network showed that AcsF and CooC proteins each form their own subgroup within this family. The AcsF proteins from C. hydrogenoformans and Archaeobglobus fulgidus were crystallized and their crystal structures were solved. A comparison of the crystal structures of AcsF proteins with the structures of two CooC proteins revealed that the main structural differences between AcsF and CooC proteins can be found between the switch I motif and the CXC motif.

Zahlreiche strikt anaerob lebende Mikroorganismen, darunter acetogene Bakterien, Sulfatreduzierer und methanogene Archaeen, nutzen den reduktiven Acetyl-CoA-Weg zur autotrophen Kohlenstoff-Fixierung oder Energiegewinnung. Die letzten Schritte der Acetyl-CoA-Bildung beruhen hierbei auf dem Zusammenspiel dreier Proteine, dem Corrinoid-Eisen/Schwefel-Protein (CoFeSP), der Methyltetrahydrofolat:CoFeSP-Methyltransferase (MeTr) und dem Acetyl-CoA-Synthase/CO-Dehydrogenase-Komplex (ACS/CODH). In der vorliegenden Arbeit wurde die Substratbindung an MeTr durch thermodynamische und kinetische Messungen untersucht. MeTHF bindet stärker an das Enzym als das demethylierte Produkt Tetrahydrofolat (THF) und scheint dabei einem einstufigen Bindungsmodell zu folgen. Das Substrat wird bei der Bindung an MeTr protoniert, wobei Asn200 eine protonierte H-N5(+)-CH3-Position des MeTHF durch eine alternative Konformation stabilisieren könnte. Asp44 und Asp76 bilden eine funktionelle Dyade bei der Substratbindung, kommen als Protondonoren zur Substrataktivierung jedoch nicht in Frage. Die Kristallstruktur von CoFeSP wurde erstmals vollständig mit der flexiblen N-terminalen [4Fe4S]-Cluster-Bindedomäne bestimmt. Die für die Cobalamin-Bindedomäne erwarteten Konformationsänderungen wurden anhand der Interaktion mit dem reduktiven Aktivator von CoFeSP (RACo) analysiert. Durch Förster-Resonanzenergietransfer wurde eine Annäherung der ortsspezifisch markierten CoFeSP-Positionen beobachtet und anhand des Fluoreszenzsignals die Kinetik der Komplexbildung mit RACo bestimmt. Durch gepulste Elektronendoppelresonanz konnte ebenfalls eine Abstandsänderung nachgewiesen werden. ACS wurde als apo-Enzym gereinigt und durch NiCl2-Rekonstitution in die aktive Form überführt. Durch die Kristallisation der C-terminalen ACS-Domäne wurden hochaufgelöste Strukturen erzeugt, welche eine Diskussion der strukturellen Details des aktiven Zentrums ermöglichen. / Several anaerobic microorganisms, including acetogenic bacteria, sulfate-reducing bacteria and methanogenic archaea operate the reductive acetyl-CoA pathway for autotrophic carbon fixation or to gain energy. The last steps of acetyl-CoA formation rely on three enzymes, the corrinoid-iron/sulfur-protein (CoFeSP), the methyltetrahydrofolate:CoFeSP methyltransferase (MeTr) and the acetyl-CoA synthase/CO dehydrogenase complex (ACS/CODH). Substrate binding to MeTr was investigated by thermodynamic and kinetic meassurements. MeTHF binds slightly stronger than the demethylated product tetrahydrofolate (THF), likely following a simple one-step-binding mechanism. Substrate binding to MeTr is coupled to proton uptake. A H-N5(+)-CH3-transition state of MeTHF could be stabilized by an alternative conformation of Asn200. Asp44 and Asp76 form a functional dyade in substrate binding but can be excluded as proton donors for substrate activation. The crystal structure of CoFeSP was solved completely, including the previously disordered N-terminal [4Fe4S]-cluster binding domain. The expected conformational change of the corrinoid binding domain was characterized by analyzing the interaction between CoFeSP and its reductive activator (RACo). An approach of the labeled CoFeSP positions in the CoFeSP:RACo complex was observed by Förster resonance energy transfer. Based on the corresponding fluorescence signal, the kinetics of complex formation were meassured in solution. Pulsed electron double resonance also showed that the labeled positions approach upon complex formation. Full-length ACS was purified in the apo state. A reconstitution of the A-cluster with NiCl2 resulted in active enzyme. Different crystal structures of the isolated C-terminal domain of ACS were solved at high resolution. Therefore, structural details of the active site could be discussed.