Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal.

Les récepteurs nucléaires (RN) sont des facteurs de transcription ligand dépendants qui contrôlent une grande variété de processus biologiques de la physiologie humaine, ce qui a fait d'eux des cibles pharmacologiques privilégiées pour de nombreuses maladies. L'un de ces récepteurs, le récepteur de l’œstrogène alpha (ERα), peut activer la prolifération cellulaire dans certaines sections de l'épithélium mammaire tandis qu’un autre, le récepteur de l'acide rétinoïque alpha (RARα), peut provoquer un arrêt de la croissance et la différenciation cellulaire. La signalisation de ces deux récepteurs peut être altérée dans le cancer du sein, contribuant à la tumorigénèse mammaire. L’activité d’ERα peut être bloquée par les anti-oestrogènes (AE) pour inhiber la prolifération des cellules tumorales mammaires. Par contre, l’activation des voies de RARα avec des rétinoïdes dans un contexte clinique a rencontré peu de succès. Ceci pourrait résulter du manque de spécificité des ligands testés pour RARα et/ou de leur activité seulement dans certains sous-types de tumeurs mammaires. Puisque les récepteurs nucléaires forment des homo- et hétéro-dimères, nous avons cherché à développer de nouveaux essais pharmacologiques pour étudier l'activité de complexes dimériques spécifiques, leur dynamique d’association et la structure quaternaire des récepteurs des œstrogènes. Nous décrivons ici une nouvelle technique FRET, surnommée BRET avec renforcement de fluorescence par transferts combinés (BRETFect), qui permet de détecter la formation de complexes de récepteurs nucléaires ternaires. Le BRETFect peut suivre l'activation des hétérodimères ERα-ERβ et met en évidence un mécanisme allostérique d'activation que chaque récepteur exerce sur son partenaire de dimérisation. L'utilisation de BRETFect en combinaison avec le PCA nous a permis d'observer la formation de multimères d’ERα fonctionnels dans des cellules vivantes pour la première fois. La formation de multimères est favorisée par les AE induisant la dégradation du récepteur des oestrogènes, ce qui pourrait contribuer à leurs propriétés spécifiques. Ces essais de BRET apportent une nette amélioration par rapport aux tests de vecteurs rapporteur luciférase classique, en fournissant des informations spécifiques aux récepteurs en temps réel sans aucune interférence par d'autres processus tels que la transcription et de la traduction. L'utilisation de ces tests nous a permis de caractériser les propriétés de modulation de l’activité des récepteurs nucléaires d’une nouvelle classe de molécules hybrides qui peuvent à la fois lier ERa ou RAR et inhiber les HDACs, conduisant au développement de nouvelles molécules prometteuses bifonctionnelles telles que la molécule hybride RAR-agoniste/HDACi TTNN-HA. / Nuclear receptors (NRs) are ligand-dependent transcription factors that control a wide variety of biological processes in human physiology, which has made them preferred pharmacological targets for many diseases. One such receptor, the estrogen receptor alpha (ERα), can activate cell proliferation in some sections of the mammary epithelium while another, the retinoic acid receptor alpha (RARα), can cause growth arrest and cellular differentiation. Signalling by these receptors can be altered in breast cancer, contributing to tumorigenesis. ERα can be blocked by antiestrogens (AEs) in the clinical setting to inhibit tumor cell proliferation. However, attempts to activate the RARα pathway with retinoids have not proven beneficial in clinical trials. This may result from the lack of specificity of the tested ligands for RARa and/or from their activity only in a subset of breast tumors. Since nuclear receptors form homo- and heterodimers, we sought to develop novel pharmacological assays to study the activity of specific receptor-dimer complexes, their dynamics and quaternary structure. We report here a new FRET technique dubbed BRET with fluorescence enhanced by combined transfers (BRETFect) that can detect the formation of ternary nuclear receptor complexes. BRETFect can monitor the activation of ERα-ERβ heterodimers and highlights an allosteric mechanism of activation that each receptor exerts on its dimer partner. Use of BRETFect in combination with PCA-BRET has allowed us to observe the formation of functional ERα multimers in live cells for the first time. The formation of multimers is favored by AEs which induce receptor degradation, and may underlie their specific properties. These assays are a net improvement over the classical luciferase-reporter experiment as they deliver real-time receptor specific information with no interference by other process such as transcription and translation. Using these BRET assays we developed a new class of NR hybrid ligands that can modulate ER or RAR activity and inhibit HDACs. This has allowed for the development of promising new bifunctional molecules such as the RAR-agonist/HDACi hybrid molecule TTNN-HA. In conclusion, the work presented here brings new insight in NR dynamics and quaternary structure and offers novel tools to study their mechanism of action or design new modulators of NR activity such as hybrid AE-HDACis and Retinoid-HDACis.

Un ensemble des données cohérentes de la littérature plaide en faveur d'une relation entre une baisse d'activité de la voie de signalisation de la vitamine A, des altérations de la plasticité synaptique et des déficits mnésiques spécifiques associés au vieillissement. Une diminution de l'activité de cette voie de signalisation est également évoquée dans les processus neurodégénératifs caractéristiques de la maladie d'Alzheimer. Dans ce contexte, les objectifs de ce travail étaient de mieux comprendre les conséquences neuro-anatomiques et fonctionnelles d'une baisse d'activité de la voie de signalisation de la vitamine A. Notre approche expérimentale a mis en œuvre 2 modèles animaux, un modèle de carence vitaminique A qui induit spécifiquement une baisse d'activité de sa voie de signalisation et un modèle d'hypothyroïdie dont il a été montré qu'il induit aussi une hypoactivité de la voie de signalisation de la vitamine A. La démarche expérimentale conduite chez les rats carencés en vitamine A comporte deux volets : (i) un volet mettant en œuvre l’imagerie et la spectroscopie RMN, (ii) un volet moléculaire consacrée à l’étude de l’expression de gènes cibles des rétinoïdes impliqués dans le processus amyloïdogène. Les mesures ont été réalisées, d'une part, chez des animaux soumis à un régime dépourvu en vitamine A pendant 10 semaines et d'autre part, chez des animaux soumis à ce même régime pendant une durée de 13 ou 14 semaines. Une partie des animaux carencés a été traitée par de l'AR. Les résultats montrent que dès 10 semaines de carence, les animaux présentent une altération du métabolisme et de son action cellulaire de la vitamine A qui se traduit par (i) une diminution significative du taux de vitamine A sérique, (ii) une diminution du taux d'ARNm codant pour les récepteurs RAR, dans le cerveau entier, le striatum, l'hippocampe et de manière moins prononcée le cortex des animaux. Après 10 semaines de régime dépourvu en vitamine A, des modifications métaboliques ont été mises en évidence essentiellement dans le cortex. Elles se traduisent par une hausse du (i) NAA/Cr, marqueur de la densité neuronale corrigée par une administration d'AR, et (ii) du GSH/Cr, indicateur du potentiel antioxydant cellulaire dans cette structure. Au plan anatomique, un ralentissement de la croissance cérébrale a été observé dés la 7ème semaine de régime. Une diminution du volume hippocampique et une augmentation des espaces ventriculaires ont été observées à partir de 11 semaines de carence. Au plan moléculaire, aucune modification de l'expression du gène codant pour APP, ou du rapport APP770-751/APP695, considéré comme un indicateur précoce de la MA n'a été observée après 10 semaines de carence. Après 14 semaines de régime dépourvu en vitamine A, de profondes modifications métaboliques sont observées dans les trois structures à savoir le cortex, l’hippocampe et le striatum. Au plan moléculaire, les principaux résultats suggèrent un basculement du processus biochimique de dégradation de la protéine APP en faveur de la voie amyloïdogénique dans le cortex, et par voie de conséquence en faveur de la formation du peptide Aß. Cependant, aucune modification du taux protéique des peptides Aß n'a été mise en évidence dans le cortex et l'hippocampe des rats carencés. Le modèle d'hypothyroïdie que nous avons mis en oeuvre entraine bien une hypoactivité de la voie de signalisation de la T3, observée dans l'hippocampe des animaux et une diminution du taux d'ARNm codant pour RARß observée dans le cortex des rats hypothyroïdiens. Au plan moléculaire, l'augmentation du rapport APP770-751/APP695 a été observée chez les rats rendus hypothyroïdiens par rapport aux rats témoins. Comme chez les rats carencés en vitamine A, les indicateurs de la voie physiologique ne sont que très faiblement affectés chez les rats rendus hypothyroïdiens. / Some data reveal that retinoid hyposignalling, presumably resulting from decreased bioavailability of retinoid ligands naturally, was shown to result in aging-related synaptic plasticity and long term potentiation (LTP) alterations as well as in aging-related decline of cognitive function. Moreover, genetic, metabolic and dietary evidence has been provided for a defective retinoid metabolism in Alzheimer disease (AD). Thus, key steps of the amyloid production process are under the control of proteins whose expression is positively regulated by RA in vitro. In this context, the aims of this work were to better understand neuro-anatomical and functionnal consequences of retinoid signaling brain hypoactivity. Our experimental method uses two animal models: a Vitamin A deficiency model which induce especially an hypoactivity of retinoid pathway, and an hypothyroid model which was also characterized by an hypoactivity of retinoid pathway. In the fisrt model, two main approch were used : (i) an NMR imaging and spectroscopy approach, (ii) a molecular approach to study expression of retinoid target genes implicated in amyloidogenic process. NMR results showed that VAD induces severe anatomic and metabolic disorders in particular a slowing of brain growth, hippocampus atrophy, and a decrease of NAA/Cr, marker of neuronal density which was observed in cortex, hippocampus and striatum. Molecular results reveal a vitamin A deficiency-related dysregulation of the amyloid pathway in the cortex of rats, which is known to be the first brain area altered by AD development. In this area, 14 weeks of deprived diet induces physiological dysregulation in the modulation of RA target genes leading to an increased amount of ADAM10, BACE and PS1, with some modifications in amyloidogenic pathway but without increased amount of Aß peptides. In hypothyroid model, molecular results suggests that adult onset-hypothyroidism may induce the amyloidogenic pathway of APP processing by increasing activity of ß and ?secretases and levels of amyloid peptides mainly in hippocampus. Together these data argue for the idea that hypoactivity of retinoid signalling which occurs naturally with aging could be a factor participating in accelerating aging and that hypothyroidism that become more prevalent with advancing age, could increase, via a hyposignaling of T3 pathway, the vulnerability of amyloidogenic pathway of APP processing as well as of other clinical symptoms of AD.

Teratogenes are external environmental factors that can cause a developmental or a congenital defect in exposed individuals. The methods used for detecting the embryotoxic effect of substances are the classic when laboratory mammals are used and the alternative which use in vitro and in ovo systems. The main difference between these two is that the alternative methods lack metabolism of maternal organism. The metabolism of maternal organism brings a high variability of results to systems of the classic methods. We used two alternative methods in this thesis, both using chicken embryo. The first of them was in ovo method called CHEST (Jelínek, 1977). CHEST method can be used for administration of tested substances from ED2 to ED6. The disadvantage of this method is due to the dilution of the tested substance after subgerminal application at ED2. Therefore we developed in vitro method called SANDWICH. No dilution occurs while using the SANDWICH method. The aim of this study was to develop in vitro method SANDWICH while using proven teratogene (all-trans retinoic acid) and its solvent (dimethyl sulfoxide), to estimate beginning of the embryotoxicity dose range for both substances using CHEST and SANDWICH, and finally to compare obtained results. We confirmed the embryotoxic effect of all-trans...

Il est maintenant bien établi que la vitamine A et son métabolite actif l’aciderétinoïque (AR), joueraient un rôle important dans les fonctions cognitives du cerveau adulte. La diminution de l’activité de la voie de signalisation des rétinoïdes et l’augmentation de celle des glucocorticoïdes (GC), se manifestent de manière concomitante au cours du vieillissementet participeraient aux altérations de plasticité et à l’étiologie du déclin cognitif lié à l’âge. De plus, certaines données ont mis en évidence des effets antagonistes de la voie des rétinoïdessur celle des glucocorticoïdes.L'objectif de ce travail visait donc à mieux comprendre les interactions entre ces deux voies de signalisation et leur impact sur les processus de plasticité cérébrale et les fonctions mnésiques chez le rongeur. L'approche expérimentale a consisté à étudier les effets d'une supplémentation nutritionnelle en vitamine A ou d'un traitement par l’AR sur le niveau corticostérone plasmatique et hippocampique, sur les mécanismes impliqués dans la biodisponibilité de la corticostérone, sur les processus de plasticité cérébrale (neurogenèse et plasticité synaptique) et sur la mémoire hippocampo-dépendante dans un modèle nutritionnel de carence en vitamine A mais également au cours du vieillissement.Nous avons montré qu’une carence en vitamine A entraînait une hyperactivation de la voie des glucocorticoïdes se traduisant par une hypersécrétion de corticostérone au niveau périphérique et hippocampique qui pourrait être liée à une diminution de capacité de liaison de la CBG mais également à une hyperactivation de la 11β-HSD1 au niveau hippocampique.D’autre part, une supplémentation nutritionnelle en vitamine A chez les rats carencés normalise les effets délétères observés sur la voie des glucocorticoïdes et supprime les altérations de neurogenèse hippocampique ainsi que les déficits de mémoire hippocampodépendante.De plus, un traitement par l’AR permettrait de moduler positivement la voie de signalisation des rétinoïdes chez la souris d’âge intermédiaire afin de diminuer l’amplitude de libération de corticostérone intrahippocampique, s’opposant ainsi aux effets délétères d’un excès de glucocorticoïdes sur les processus neurobiologiques et cognitifs au cours du vieillissement.Ce travail contribue à la démonstration d'une modulation de la biodisponibilité des glucocorticoïdes par le statut en vitamine A observée au cours d'une carence en vitamine A et du vieillissement. Il offre de nouvelles perspectives dans le développement d'une prévention du déclin cognitif lié à l'âge axée sur les facteurs nutritionnels tels que la vitamine A. / It is now established that vitamin A and its active metabolite, retinoic acid (RA), are required for cognitive functions in the adult hood. The hyposignaling of retinoic acid and the hyperactivity of the glucocorticoid (GC) pathway appear concomitantly during aging and both would contribute to the deterioration of hippocampal plasticity and functions. Moreover, recent data have evidenced counteracting effects of retinoids on the GC signaling pathway.The goal of the present study has been to shed more light on the interactions between both signaling pathways and their consequences on cerebral plasticity and memory processes.We have investigated them not only in a well-established nutritional model of vitamin A deficiency but also during aging. Indeed, our experimental approach has consisted inmanipulating the status in vitamin A (deficiency and/or supplementation or RA treatment) inrodents to better understand its impact on plasma and intrahippocampal corticosterone levelsand the mechanisms involved in corticosterone bioavailability. Hippocampus-dependentmemory and plasticity (adult neurogenesis and synaptic plasticity-related gene expression)have also been assessed.We have shown a hyperactivity of the glucocorticoid pathway in vitamin A-deficientrats, leading to elevated peripheral and hippocampal corticosterone levels. This is probably due to a decrease in CBG binding capacity and to the hyperactivity of the hippocampal 11β-HSD1. Furthermore, a vitamin A supplementation normalizes glucocorticoid activity and hippocampal neurogenesis levels and corrects memory deficits.Besides, in middle-aged mice, a RA treatment is able to positively modulate the retinoidsignaling pathway inducing a decreased hypersecretion of intrahippocampal corticosterone. It thus counteracts the deleterious effects of an excess of glucocorticoids on neurobiological and memory processes.Altogether, these results contribute to the demonstration that in vitamin A deficiency and during aging, the status in vitamin A modulates GC activity. This work proposes new preventive perspectives based on nutritional factors such as vitamin A in order to delay agerelated cognitive decline.

Células pluripotentes são aquelas que possuem a capacidade de dar origem às células dos três folhetos embrionários (ectoderma, mesoderma e endoderma), bem como também às células germinativas. As células-tronco embrionárias (CTE) são as células pluripotentes mais conhecidas, as quais apresentam uma elevada capacidade de diferenciação celular e autorenovação. Estas propriedades tornam as CTE potenciais ferramentas para a medicina regenerativa, porém seu uso na prática clínica enfrenta várias barreiras. Neste sentido, o acúmulo de conhecimento a respeito dos mecanismos envolvidos na manutenção da pluripotência, levou ao desenvolvimento de técnicas capazes de induzir a pluripotência em células somáticas adultas. Na maioria das abordagens, isto se dá pela expressão ectópica de fatores de transcrição envolvidos na pluripotência (como Oct4 e Nanog). Com isto em vista, torna-se evidente que estudos que levem a um melhor entendimento destas propriedades biológicas, podem levar ao desenvolvimento desta importante área. Apesar destas inovações, os mecanismos responsáveis pela manutenção ou indução da pluripotência e da autorenovação, continuam largamente inexplorados. Neste sentido, o conjunto de técnicas referidas como High Content Screening (HCS) apresenta características fundamentais que permitiriam a interrogação sistemática e em larga-escala de fatores que possam estar influenciando nestes processos. A técnica de HCS se baseia no uso de microscopia de fluorescência em placas de 96 ou mais poços, permitindo a aquisição e a análise automatizada das imagens, de forma a quantificar alterações fenotípicas nas células. O presente trabalho teve como objetivo estabelecer um modelo experimental para a avaliação funcional e em larga escala de fatores que possam influenciar a diferenciação celular. Tendo em vista a facilidade de cultivo e manuseio, a linhagem humana de células pluripotentes de carcinoma embrionário (CCE) NTera-2, foi utilizada. Para a padronização do modelo, o processo de diferenciação foi avaliado ao longo do tempo (em 2, 4 e 8 dias) na presença ou ausência de ácido transretinóico (atRA), utilizado como indutor de diferenciação celular. Para isso, os níveis transcricionais de Oct4, Nanog (marcadores da pluripotência) e de N-Caderina foram avaliados por PCR em tempo real. Finalmente, a expressão e a distribuição celular de Oct4, Nanog e da alfa-actina foi avaliada por meio de microscopia de fluorescência automatizada, com o uso de anticorpos ou faloidina marcada, utilizando um sistema de HCS (Operetta, Perkin Elmer) para a análise dos resultados. A proliferação celular das células submetidas à diferenciação foi avaliada pelo ensaio do XTT. O atRA inibiu a proliferação e induziu a diferenciação; como demonstrado, respectivamente, pelos resultados do ensaio do XTT, decaimento dos níveis de Oct4 e Nanog e, concomitante aumento de N-Caderina, ao longo do tempo. Também foi observada a diferenciação espontânea da linhagem, na ausência de atRA, porém, de forma reduzida. Finalmente, as avaliações de HCS evidenciaram que, durante o processo de diferenciação, a perda da expressão nuclear de Oct4 e Nanog está associada à alteração do fenótipo celular, com a redistribuição da actina cortical e a formação das stress fibers, caracterizando o processo de transição epitélio-mesenquima (EMT), um importante mecanismo envolvido na diferenciação celular. Os resultados obtidos neste trabalho demonstram a viabilidade do uso da linhagem NTera-2 como modelo para estudos futuros de HCS visando a identificação de moléculas que atuem na modulação de propriedades fundamentais das células tronco pluripotentes. / Pluripotent stem cells are those that possess the ability to generate cells from the three germ layers (ectoderm, mesoderm and endoderm), as well as the germ cells. The embryonic stem cells (ESC) are the best known pluripotent cells that present a high capacity of cell differentiation and self renewal. These properties of the ESC make them potential tools for the regenerative medicine, but their use in clinical practice faces several barriers. In this sense, the accumulation of knowledge about the mechanisms involved in the maintenance of pluripotency led to the development of techniques capable of inducing pluripotency in adult somatic cells. In most approaches, this is achieved by the ectopic expression of transcription factors involved in pluripotency (such as Oct4 and Nanog). With this in mind, it becomes clear that studies that provide a better understanding of these biological properties can lead to the development of this important area. Despite these innovations, the mechanisms responsible for the maintenance or induction of pluripotency and self-renewal remain largely unexplored. In this sense, the set of techniques such as High Content Screening (HCS) has fundamental characteristics that allow systematic and large-scale interrogation of factors that may be influencing these processes. The HCS technique is based on the use of fluorescence microscopy in 96-well or larger plates, allowing the automated acquisition and analysis of images, so as to measure phenotypic changes in the cells. This study aimed to establish an experimental model for functional and large-scale assessment of factors that may influence cellular differentiation. Due its simple cultivation and handling characteristics, a human lineage of pluripotent embryonal carcinoma cell (ECC) NTERA-2 was used. To standardize the model, the process of differentiation was evaluated over time (at 2, 4 and 8 days) in the presence or absence of all-trans retinoic acid (atRA), used as an inducer of cellular differentiation. The transcriptional levels of Oct4, Nanog (pluripotency markers) and Ncadherin were assessed by real time PCR. Finally, the expression and cellular distribution of Oct4, Nanog and alpha-actin was assessed by fluorescence microscopy, using antibodies or labelled phalloidin, using a HCS platform (Operetta, Perkin Elmer) for the analysis of the results. The proliferation of cells undergoing differentiation was assessed by XTT assay. atRA inhibited proliferation and induced differentiation, as shown by the XTT assay results, and the decay of Oct4 and Nanog, and concomitant increase of N-cadherin levels over time, respectively. It was also observed spontaneous differentiation in the absence of atRA although in less extent. Finally, the HCS results showed that during the differentiation process, the loss of nuclear expression of Oct4 and Nanog is associated with alteration of cell phenotype, with redistribution of cortical actin and formation of stress fibers, characterizing the epithelialmesenchymal transition (EMT), an important mechanism involved in cell differentiation. The results of this study therefore demonstrate the feasibility of using the NTERA-2 cell line as a model for future HCS studies aiming identification of molecules that act in the modulation of fundamental properties of pluripotent stem cells.

As vias de sinalização celular por meio de moléculas são um dos principais meios de controle funcional de um organismo. O entendimento das funções de moléculas sinalizadoras facilita a compreensão das vias metabólicas de um organismo, assim possibilitando uma melhor compreensão de vários eventos biológicos e também de várias doenças. A sinalização pelo ácido retinóico (AR), e seus derivados, é responsável pelo controle de várias funções, por exemplo: crescimento celular, diferenciação celular, formação da retina, desenvolvimento cardíaco e também relacionado a várias patologias como diabetes, obesidades, cânceres, e doenças cardiovasculares. A ação do ácido retinóico é controlada em dois níveis: no metabolismo de síntese/degradação e na sua utilização na sinalização para a expressão gênica. A maquinaria que controla o metabolismo inclui as enzimas de síntese do AR (aldeído desidrogenase ALDH) e as enzimas de degradação do AR (Cyp26), que controlam a distribuição espaço-temporal do AR durante a embriogênese. As ALDHs são enzimas NAD(P)+ dependentes, que oxidam uma ampla gama de aldeídos para os seus correspondentes ácidos carboxílicos, sendo ALDH1A2 a principal enzima na transformação de retinal em ácido retinóico. A maquinaria da sinalização celular por AR contém os receptores nucleares controlados por AR (RARs) que estão envolvidos com o controle da transcrição gênica. Os mecanismos de controle de expressão mais comuns são os que ocorrem na fase transcricional. Um desses mecanismos envolve proteínas que se ligam às regiões promotoras de transcrição, representadas por trechos de DNA que geralmente estão localizados próximo à região de início da transcrição, mas que também podem estar a centenas ou até milhares de pares de bases desse início. Essas proteínas modulam a maquinaria transcricional, podendo ativá-la ou inibi-la. A associação de várias técnicas como a biologia molecular, bioinformática, filogenia, análises estruturais de biomoléculas, mecânica molecular e métodos termodinâmicos tem se mostrado uma poderosa abordagem para compreensão de sistemas biológicos simplificando e agilizando o desenvolvimento do conhecimento científico. Nessa direção, esse estudo desenvolveu duas análises: a primeira estudando a evolução das funções das enzimas ALDH, utilizando-se de técnicas de genômica combinatória, filogenia, bioinformática, estrutura de biomoléculas e de biologia do desenvolvimento, tentando compreender o modo como as ALDHs, que apresentam as seqüências de aminoácidos bastante similares, puderam divergir para gerar funções diversas como a destoxificação e a sinalização. Para este estudo foram analisados os genomas de 487 organismos em busca de seqüências de ALDHs e também o genoma do organismo modelo Branchiostoma floridae. Foram obtidas 190 seqüências que foram utilizadas em uma análise filogenética para tentar compreender a função primordial e também para definir grupos de aminoácidos candidatos a marcadores das diferentes famílias de ALDHs. Essas 190 seqüências também foram modeladas estruturalmente e analisada a forma e o volume do canal onde se aloja o aldeído a ser oxidado. A partir dessas informações foi possível prever que as ALDHs passaram das funções ancestrais de controle do padrão corporal para algo mais abrangente como funções protetoras. A segunda análise, utilizando-se das estruturas tridimensionais dos fatores de transcrição ligados ao DNA em diferentes posições e submetendo esses complexos a processos de mecânica molecular, cálculos termodinâmicos e análises das ligações de hidrogênio para tentar prever os mais prováveis sítios de interação entre os receptores e o DNA. O modelo escolhido para essa análise foram os fatores de transcrição regulados por ácido retinóico o RAR e RXR utilizando a região promotora do gene RARE-2 para avaliar as mais prováveis regiões de ligação desses fatores. Para esse estudo foram construídos 71 complexos proteína-DNA que foram submetidos a processos de mecânica molecular e cálculos termodinâmicos. A partir dessas informações foi possível prever uma região de maior afinidade entre o fator de transcrição e o DNA. As análises de ligações de hidrogênio possibilitaram definir exatamente a região de interação entre os fatores de transcrição e o DNA, e também descrever as interações moleculares responsáveis pela especificidade da interação. / Cellular signaling paths through molecules are one of the main processes of functional control of an organism. The comprehension of signaling molecules functions enables one to understand the metabolic pathways of an organism, along with related biological events and several diseases. The signaling through retinoic acid (RA) and its secondary products is responsible for controlling several functions, such as cellular growth and differentiation, retinas formation and cardio development, and is also related to several pathologies such as diabetes, obesity, cancers and cardiovascular disorders. There are two levels of control of retinoic acid activity: synthesis/degradation metabolism and its use in gene expression signaling. The machinery that controls the metabolism includes RAs synthesis (aldehyde dehydrogenase ALDH) and degradation (Cyp26) enzymes, which control the space-temporal distribution of RA during the embryogenesis. The ALDHs are NAD(P)+ dependent enzymes that oxidize many types of aldehydes into the related carboxylic acids, being the ALDH1A2 the main enzyme involved in the process of transformation of retinal into retinoic acid. The machinery of cellular signaling through RA contains the nuclear receptors controlled by RA (RARs) that are involved in the control of gene transcription. The most common mechanisms of expression control are the ones that occur during the transcriptional phase. One of these mechanisms involves proteins that bind to the transcription promoter regions, represented by DNA sequences that are usually located close to the region where the transcription starts, but can also be hundreds or thousands of base pairs apart from the starting point. These proteins modulate the transcriptional machinery, being responsible for both its activation and inhibition. The association of several techniques as molecular biology, bioinformatics, phylogeny, structural analysis of biomolecules, molecular mechanics and thermodynamic methods has been shown as a powerful tool for the understanding of biological systems, simplifying and speeding up the production of related scientific knowledge. Facing this direction, the present study developed two analyses. The first one studied the evolution of ALDH enzymes functions, using the techniques of combinatory genomic, phylogeny, bioinformatics, structure of biomolecules and developmental biology, in the attempt of understanding how the ALDHs could diverge and acquire different functions as detoxification and signaling, despite the fact that they have very similar aminoacid sequences. For this study, ALDHs sequences were searched for in the genome of 487 organisms plus the model organisms, Branchiostoma floridae. All 190 sequences obtained were used in a phylogenetic analysis, in the attempt of understanding the primordial function of the enzyme and defining possible groups of conserved aminoacids in the different families of ADLHs. These 190 sequences were also structurally modeled and the shape and volume of the channel where the aldehyde is placed to be oxidized were analyzed. Based on this information, it became possible to predict that the ALDHs moved from ancestral functions of corporal pattern control to a wider spectrum of protection functions. For the second analysis we submitted the complex formed by tridimensional structures of the transcriptional factors bond to DNA in different positions to processes of molecular mechanics, thermodynamic calculi and analysis of the hydrogen bonds, in order to predict the most probable sites of interaction between the receptors and the DNA. The model chosen for this analysis were the transcription factors regulated by retinoic acid, RAR and RXR, using the promoter region of the gene RARE-2 to assay the most probable binding regions of these factors. For this study, 71 protein-DNA complexes were built and submitted to processes of molecular mechanics and thermodynamic calculi. Based on the resulting data, it became possible to predict a region of greater affinity between the transcription factor and the DNA. The analyses of hydrogen bonds enabled us to define the exact region where the interaction between the transcription factor and the DNA takes place and also enabled us to describe the molecular interactions responsible for the specificity of this interaction.

Der humane Stammzellfaktor (SCF) ist ein zentraler Wachstumsfaktor für Mastzellen in der Dermis und für Melanozyten in den Basalzellschichten der Epidermis. Er wird u. a. von Keratinozyten produziert. In dieser Arbeit wurde die mögliche Regulation der Expression von SCF aus Keratinozyten durch All-Trans-Retinsäure (RA) und Dexamethason in vitro an Hand der HaCaT-Zelllinie untersucht. Die HaCaT-Zellen wurden mit den beiden o. g. Substanzen (10 hoch -5 M bis 10 hoch -9 M) über 24 Stunden und 11 Tage inkubiert. Die Auswertung der HaCaT-Zellzahl, des Gesamt-Proteins SCF, dessen Splicevarianten (mSCF, sSCF) und der Rezeptoren von RA (RAR-alpha, -beta, -gamma) und von Dexamethason (GR-alpha, -beta) erfolgte mittels ELISA und RT-PCR. Dabei ergaben sich folgende Resultate: RA bewirkt einen Anstieg von SCF, Dexamethason bewirkt bei Kurzinkubation eine deutliche Zunahme von SCF, bei Dauerinkubation einen starken Abfall. Die RA-Rezeptoren RA-alpha und -gamma waren nach Inkubation mit RA verstärkt nachzuweisen; die Glukokortikoid-Rezeptoren GR-alpha und -beta zeigten nach Inkubation mit Dexamethason ebenfalls eine vermehrte Expression. Die Expression des Mastzellwachstumsfaktors SCF könnte deshalb unter physiologischen, pathologischen und therapeutischen Bedingungen durch Retinoide und Glukokortikoide reguliert sein. / The human stem cell factor (SCF) is a crucial growth factor for mast cells in the dermis and for the melanocytes in the basal layers of the epidermis. SCF is produced, among others, by keratinocytes. This study examines the possible regulation of the expression of SCF from keratinocytes by all-trans retinoic acid (RA) and dexamethasone in vitro by the keratinocyte cell line HaCaT. The HaCaT-cells were incubated for 24 hours or 11 days, respectively, with one of the above mentioned substances (10 to the power of -5 M to 10 to the power of -9 M). The analysis of the number of HaCaT-cells, of the total SCF protein, its splice variants (mSCF, sSCF), the receptors of RA (RAR-alpha, -beta, -gamma), and of the dexamethasone (GR-alpha, -beta) was done by ELISA and RT-PCR. The following results were found: RA induces an increase of SCF, dexamethasone at a short incubation period a considerable increase of SCF, and at long-term incubation a strong decrease. The RA-receptors RA-alpha und -gamma expression is increased after incubation with RA, and the glucocorticoid-receptors GR-alpha and -beta after the incubation with dexamethasone. Therefore, it is probable that the increase of the mast cell growth factor SCF under physiological, pathological and therapeutic conditions could be regulated by retinoic acid and glucocorticoids.

Das Neuroblastom, ein embryonaler Tumor des sympathischen Nervensystems, stellt durch seine außerordentliche Heterogenität klinisch eine große Herausforderung dar. Ziel dieser Arbeit war es, die Expression der GATA-Transkriptionsfaktoren GATA-2, -3, -4 und des Kofaktors friend-of-GATA (FOG)-2 im Neuroblastom und im sich entwickelnden sympathischen Nervensystem zu vergleichen. Davon ausgehend wurde die Rolle der Proteine im Neuroblastom näher untersucht. Es wurde gezeigt, dass alle vier Proteine in humanem Neuroblastom-Gewebe sowie in einer humanen Neuroblastom-Zelllinie (SH-SY5Y) exprimiert werden und nukleär lokalisiert sind. Lediglich Gata-4 wurde jedoch im sich entwickelnden sympathischen Nervensystem der Maus nicht exprimiert. Die Einzigartigkeit von GATA-4 bestätigte sich auch durch Microarray-Analysen von 251 Neuroblastom-Proben. Während GATA-2, -3 und FOG-2 signifikant mit Markern für eine günstige Prognose assoziiert wurden, korrelierte die GATA-4 Expression mit MYCN-Amplifikation. Interessanterweise führte die lentivirale Überexpression von GATA-4 zu einer Proliferationsinhibition humaner Neuroblastomzellen (SH-SY5Y und SH-EP) sowie zu der verstärkten Expression von DPYSL3 und Bcl-2. Zudem konnte durch das Differenzierungsagens Retinsäure die GATA-4 Expression induziert werden. So wurde in dieser Arbeit bestätigt, dass normale Entwicklungsprozesse in prognostisch günstigen Neuroblastomen intakt sind. Umgekehrt sind in Tumoren mit schlechterer Prognose diese Prozesse gestört. Die in vitro verlangsamte Proliferation sowie die Induktion von Bcl-2 nach Überexpression von GATA-4 könnten in vivo bei der schlechteren Therapierbarkeit der prognostisch ungünstigen Neuroblastome eine Rolle spielen. Es ist bekannt, dass die Behandlung mit Retinsäure u. a. durch Bcl-2 zu einer Chemoresistenz führen kann. Da die Expression von GATA-4 durch Retinsäure induziert werden und GATA-4 die Expression von Bcl-2 verstärken kann, könnte GATA-4 an der Chemoresistenz beteiligt sein. / Neuroblastoma, an embryonal tumor of the sympathetic nervous system, remains clinically challenging due to its extreme heterogeneity. The aim of this study was to compare the expression of GATA transcription factors GATA-2, -3, -4 and the cofactor friend-of-GATA (FOG)-2 in neuroblastoma and in the developing sympathetic nervous system. The functional role of these proteins in neuroblastoma was subsequently investigated based on the results of the GATA expression studies. The analysis showed that all four proteins are expressed in human neuroblastoma tissue as well as in a human neuroblastoma cell line (SH-SY5Y) and are localized in the cell nuclei. Only Gata-4, however, was not expressed in the developing murine sympathetic nervous system. Its uniqueness was also confirmed by microarray analyses of 251 neuroblastoma specimens. While GATA-2, -3 and FOG-2 were significantly associated with favorable prognostic markers, GATA-4 expression correlated with MYCN-amplification. Interestingly, lentiviral GATA-4 overexpression led to inhibited proliferation of human neuroblastoma cells (SH-SY5Y and SH-EP) as well as to increased expression of DPYSL3 and Bcl-2. In addition, GATA-4 expression could be induced by the differentiation agent retinoic acid. In conclusion, it was confirmed that normal developmental molecular pathways are intact in prognostically favorable neuroblastoma. In contrast, these developmental processes seem to be defective in tumors with unfavorable prognosis. The slowed proliferation, as observed in vitro, as well as the induction of Bcl-2 brought about by GATA-4 overexpression may contribute in vivo to the difficult treatability of prognostically unfavorable neuroblastoma. It is known that treatment of neuroblastoma with retinoic acid can lead to chemoresistance, mediated by Bcl-2 amongst others. Since retinoic acid can induce the expression of GATA-4 and GATA-4 itself can enhance the expression of Bcl-2, GATA-4 could be involved in chemoresistance.

Retinoide sind Steroide, Derivate des Vitamin A, die ihre Wirkung durch Interaktion mit Retinoid-Rezeptoren, lokalisiert im Zellkern, entfalten. Diese Retinoid-Rezeptoren, weisen funktionelle und strukturelle Ähnlichkeiten mit dem Androgenrezeptor auf. Untersuchungen an Zellkulturen zeigen, daß der Effekt von Retinoiden auf das Zellwachstum von Prostata-Epithelzellen und Prostatakarzinomzellen keiner einfachen Kinetik folgt, sondern neben der Abhängigkeit von der Retinoid-Dosis, auch von der Zellinie, insbesondere deren Androgenrezeptor abhängt. So zeigten LNCaP-Zellen Unterschiede in der Zellproliferation im Vergleich zu PC3 oder NRP154 (Prostatakarzinom Ratte) und NRP152 (Prostataepithel Ratte). Northern-blots mit Poly(A)RNA von verschiedenen Prostata-Zellinien (benigne und maligne) nach Behandlung mit Retinoic acid (RA) bestätigte dosisabhängige Unterschiede in der Expression der Androgenrezeptor (AR)-mRNA.Umgekehrt verursachte die Behandlung mit Testosteron in verschiedenen Prostata-Zellinien (benigne und maligne) Unterschiede in der Expression der Retinoid-Rezeptor-mRNA für RAR( und RAR(. Die Ergebnisse unterstützen somit die Hypothese einer Interaktion von Retinoiden und Androgenen mit deren respektiven Rezeptoren. Untersuchungen an humanem Prostatagewebe bestätigten Unterschiede in der Expression von RAR(mRNA und RAR(mRNA mittels RT-PCR. Durch immunhistochemische Untersuchungen an humanem Prostatagewebe mit Antikörpern gegen RAR ( und RAR( konnten deren Lokalisation und Expression nachgewiesen werden. Dabei zeigte sich wiederum eine erhöhte Immunreaktivität von RAR( beim Prostatakarzinom, im Gegensatz zu RAR(, das bei benignem Prostataepithelium eine deutlich stärkere Immunreaktivität aufwies. Zusammenfassend belegen unsere Untersuchungen, daß Retinoide einen meist wachstumshemmenden Effekt auf Prostatakarzinomzellinien verursachen, der wahrscheinlich neben Bindung an Retinoid-Rezeptoren (RARs`) durch Interaktion mit dem Androgenrezeptor (AR), vermittelt durch Hemmung verschiedener membrangebundener Zellproteine und Rezeptoren, wie EGF-R verursacht wird. / Retinoids are steroids, derivatives of vitamine A, that excert their activities by interaction with the retinoic acid receptors (RARs') located in the cell nucleus. The RARs possess structural and functional similarities to the androgen receptor (AR). Investigations in cell cultures demonstrated that the effect of retinoic acid (RA) on cell proliferation is dependent not only on the RA dosage, but also on the androgen receptor status of the cell line. LNCaP cells showed a difference in cell proliferation when treated with RA, as opposed to PC3 or NRP154 (rat prostate cancer cell line) and NRP152 (rat prostate epithelial cell line). Northern blots with Poly(A)RNA from different prostate cell lines (benigne and maligne, with different androgen dependency) when treated with different concentrations of RA, demonstrated a dose-dependent expression of the androgen receptor (AR)mRNA. Conversely resulted the treatment with different concentrations of testosterone to different expressions of the RAR-mRNAs. The results, therefore, support the hypothesis of an interaction of retinoids and androgen with their respective receptors. Investigations with human prostate tissue (malignant and benign) confirms differences in RAR-expression byRT-PCR and immunhistochemistry. Again, prostate cancer showed an overexpression of RAR(, whereas benign prostate tissue demonstrated an overexpression of RAR(. Our investigations, in summary, demonstrate the overall inhibitory effect of retinoids with respect to cell proliferation in prostate cancer cell lines. There is evidence , that this biologic effect is not only triggert by interaction of retinoids and androgens with their own receptors, but occurs by cross-interaction of retinoids with the androgen receptor and androgens with the RARs. Furthermore, the biologic effect of retinoids on cell growth is dependent on membrane bound receptors, such as EGF-R.