Les amphipoles (APols) sont devenus des outils importants pour la stabilisation, le repliement, et les études structurales et fonctionnelles in vitro des protéines membranaires (MPs). Les MPs sont les unités fonctionnelles des biomembranes et représentent environ un tiers des protéines qui sont codées par le génome. La première partie de mon travail est dédiée à la cristallisation de MPs piégée par des APol. La cristallisation directe de protéines solubilisées en APol sera d'une grande importance pour la biologie structurale. Cependant, malgré des efforts considérables, il n'est pas certain que les complexes MP/APol peuvent être utilisés pour former des cristaux bien ordonnés utilisables en cristallographie des rayons X. Le premier objectif de cette thèse est de montrer que les MPs piégées par des APol peuvent être cristallisées in meso. Pour faire cela, nous avons utilisé des bicouches amphiliques interconnectées qui sont ajustables pour certaines MPs. Cette méthode a été récemment développée dans notre laboratoire. Nous avons utilisé la bactériorhodopsin (BR) piégée avec APol A8-35 comme système modèle pour nos études cristallographiques. Le premier cristal obtenu diffractait à 3 Å, alors qu'une nouvelle méthode de cristallisation en nanovolume, exploitant des précipitants secs, améliore les pics de diffraction aux rayons X observés jusqu'a 2 Å. La structure de BR a été résolue à 2 Å et s'est révélée identique aux autre structures obtenues précédemment à partir de protéine solubilisée en détergents. Nous suggérons que le protocole proposé, de cristallisation in meso, est applicable aux MPs solubilisées avec des APols.La deuxième partie est liée aux applications des APols pour les études de MPs à l'aide de spectroscopie Raman exaltée de surface (SERS). La spectroscopie SERS a énormément évolué depuis sa découverte en 1970. C'est un outil analytique puissant pour sélectionner les molécules qui adsorbent sur des nanoparticules et des nanostructures à base de métaux nobles, possiblement au niveau de la molécule unique. Malheureusement les études de MPs sont loin de l'application courante du SERS à cause de la difficulté résultante de la nature amphiphilique des MPs. La capacité des APols à piéger les MPs et de les garder solubles, stables et fonctionnelles ouvre la voie pour des applications extrêmement intéressantes des études SERS, éventuellement au niveau de la molécule unique. De plus, le deuxième objectif de ce travail de thèse était de démontrer la faisabilité de l'utilisation de SERS avec des MPs piégées par des APols. Le même modèle (BR/A8-35) a été utilisé pour les études cristallographiques et pour les agrégats de NP d'argent. Cette tâche a été réalisée a un niveau suffisant pour commencer des études de MPs avec la méthode SERS.Le premier chapitre de cette thèse commence avec des informations générales à propos de l'importance des études de MPs et les problèmes inhérents à leur manipulation. Plus loin dans le chapitre, un bref résumé des APols, de leurs propriétés et leurs applications est présenté. La majeure partie de l'introduction est dédiée aux points importants des différentes approches de cristallisation de MPs et de spectroscopie Raman, en particulier SERS spectroscopie, et leurs applications aux protéines. La fin de la partie “Introduction” présente les conclusions à propos des applications des APols pour les études de cristallographie aux rayons X et pour les études de spectroscopie SERS sur les MPs, définissant les objectifs principaux pour ce travail. Le chapitre “Materials and methods” consiste en une description détaillée des matériels et des protocoles utilisés dans cette étude. Le résultat des études de cristallisation et de SERS et leurs interprétations sont présentés comme deux différentes parties dans le dernier chapitre “Results and discussions”. Le chapitre “Conclusions and perspectives est présent dans chaque partie. / Amphipols (APols) have become important tools for the stabilization, folding, and in vitro structural and functional studies of membrane proteins (MPs). MPs are the main functional units of biomembranes and represent roughly one-third of the proteins encoded in the genome. The first part of my work was dedicated to crystallization of a MP trapped by APol. Direct crystallization of MPs solubilized in APols would be of high importance for structural biology. However, despite considerable efforts, it is still not clear whether MP/APol complexes can be used to form well-ordered crystals suitable for X-ray crystallography. The first major goal of this PhD thesis work was to show that APol-trapped MP can be crystallized in meso. To perform it we utilized special, flexibly adjustable for a certain MP, interconnected amphiphilic bilayers (IAB) approach which has been recently developed in our laboratory. We used bacteriorhodopsin (BR) trapped with APol A8-35 as a model system for our crystallization studies. The first obtained crystals diffracted to 3 Å, while a new developed type of high throughput nanovolume crystallization, exploiting dry precipitants, shifted the observed X ray diffraction peaks beyond 2 Å. The structure of BR was solved to 2 Å and found to be indistinguishable from previous structures obtained with a detergent-solubilized protein. We suggest that the proposed protocol of in meso crystallization is generally applicable to APol-trapped MPs.The second, to a certain extent, complementary part of the present work was related to application of APols to the surface-enhanced Raman scattering (SERS) studies of MPs. SERS spectroscopy has been developed dramatically since its discovery in the 1970s. It is a powerful analytical tool for selective sensing of molecules adsorbed onto noble metal nanoparticles (NPs) and nanostructures, including at the single molecule (SM) level. Unfortunately, MPs studies are far away from the main stream of SERS applications due to the great handling difficulties resulting from the amphiphilic nature of MPs. The ability of APols to trap MPs and keep them soluble, stable and functional opens the way for highly interesting applications of SERS studies, possibly at the SM level. Thus, the second goal of this PhD thesis work was to prove our concept of feasibility of SERS with MPs trapped by APols. Using the same as in the crystallization studies model BR/A8-35 complexes and silver NP aggregates, the task was fulfilled to a degree enough to start with the SERS studies of MPs.The first chapter of the PhD thesis begins with general information about the importance of MP studies and the problems with their handling. Further in this chapter, a brief overview of APols, their properties and applications is presented. The largest part of the “Introduction” is dedicated to main points of different MP crystallization approaches and Raman spectroscopy, in particular SERS spectroscopy, and their applications to proteins. The end of the “Introduction” part presents the conclusions about APol application for X-ray crystallography and SERS spectroscopy studies of MPs, setting the main goals for the present work. The “Materials and methods” chapter consists of detailed description of the materials and protocols used in this study. The results of crystallization and SERS studies and their interpretations are presented as two different parts in the last “Results and discussions” chapter. The “Conclusions and perspectives” sections accompany each of these parts.

Detection of explosives has always been a challenging issue all over the world. Different analytical techniques and instrumentation methods have been explored to obtain a 100% fail proof detector. Some technologies have matured and have been deployed in the field already. However, active research is still being pursued to make the ultimate explosive detection device. The present thesis broadly addresses the development of Raman spectroscopy based techniques for the detection of explosives. Although Raman spectroscopy has technologically developed and has become a regular tool for chemical identification, its use in the field of detection of explosives has been limited. Two aspects of detection were addressed in this thesis. The first part consists of the detection of minute quantities or traces of explosives using a Raman based method. In order to approach this problem, surface enhanced Raman spectroscopy (SERS), an offshoot of Raman spectroscopy was explored. Chapters 2-4 deal with developing efficient SERS substrates. In this endeavour, the first and the most obvious choice as SERS substrates were silver (Ag) nanoparticles (NPs). However, we were exploring methods that could be simple one-pot synthesis methods, cost-effective and without employing strong reducing agents (green). Therefore, Ag NPs were synthesized using biosynthetic route. These nanoparticles were used to study their SERS efficiency. Sub-nano molar concentration of dye as well explosive like trinitrotoluene (TNT) and hexanitrohexaazaisowurtzitane (CL-20) could be obtained for both the clove reduced as well as pepper Ag nanoparticles. Hence Ag NPs are very efficient SERS substrates. In the second part of the work on SERS, bimetallic nanoparticles with core-shell (Agcore-Aushell) architecture were synthesized, characterized and tested for SERS activity. After successful synthesis and characterization of the bimetallic nanoparticles, these were tested for their SERS activities using a dye molecule and an explosive molecule. SERS spectra could be obtained for the bimetallic nanoparticles. It was observed that the sensitivity of these NPs were almost at par with the mono-metallic Ag NPs. In order to bring SERS from laboratory to field, a more practical approach was to prepare solid SERS substrates or SERS substrates on solid platform. In the next chapter, we ventured into the most abundant material which forms the backbone of the organic world, carbon. Various carbonaceous materials ranging from chemically synthesized graphene, graphene oxide, multi-walled carbon nanotube (MWCNT), graphite and activated charcoal were explored as potential substrates for surface enhanced Raman spectroscopic applications. The analytes chosen for this particular study were some fluorescent molecules such as rhodamine B (RB), rhodamine 6G (R6G), crystal violet (CV), Nile blue A (NBA) and a non-fluorescent molecule acetaminophen, commonly known as paracetamol. Enhanced Raman signals were observed for the fluorescent molecules, especially for the molecules whose absorbance maxima are near the excitation wavelength of the laser (514.5 nm). The most interesting outcome of this work was obtaining enhanced Raman signals of nanomolar concentration of R6G on activated charcoal. However, for the non-fluorescent molecule, paracetamol, Raman spectra could not be observed beyond -5 10M concentration for all the carbon substrates including chemically synthesized graphene and MWCNT. This study was crucial in our quest for an ideal SERS substrate. Our observations let us to conclude that chemically synthesized graphene was not the only candidate for the preparation of SERS substrates. Since carbon materials efficiently adsorb and also provide a separate channel for energy decay (fluorescence quenching), even activated charcoal could be employed as a SERS platform. However, carbon alone could not provide an effective solution for the preparation of SERS substrates. Therefore, combining the plasmonic effect of the metal nanoparticles with the efficient adsorption and fluorescence quenching of carbon materials would be ideal. In the next part of the carbon studies, graphene-Ag composites which were either prepared by in situ reduction process or physically mixed were studied for SERS activity. An ideal SERS substrate should possess the following properties: (i) Support plasmon, thereby provide SERS enhancement (ii) Easy to fabricate or synthesize (large scale/bulk) (iii) Ensure high reproducibility and sensitivity (iv) Low false alarm from matrix chemicals (v) Cost effective (vi) Solid substrate (in the form of chip, pellet, slide etc.) Hence, as a final study, carbon silver based composites were explored. R6G was chosen as an analyte again and SERS experiments were conducted. Raman signals at low concentration could be obtained for the carbon-Ag composites as well. In addition, feasibility experiments were also conducted for an explosive molecule, FOX-7. From these preliminary experiments we observed that carbon-metal NP composites can be efficient, cost-effective SERS substrates that will overcome the current issue. The previous chapters dealt with the trace detection of explosives. The next part of the thesis deals with the development of the Raman spectroscopic methods for non-invasive detection of concealed objects. Chapters 4 and 5 primarily focus on explosives detection. Spatially offset Raman spectroscopy (SORS) instrumentation was developed in the laboratory for non-invasive detection solid and liquid explosives. Several experiments were carried out to detect concealed materials inside high density polyethylene (HDPE) containers, coloured glass bottles, envelopes etc. with this technique, Raman signals of materials could be retrieved even within 4 mm thick outer-layer. SORS imaging experiments were also performed on bilayered compounds, tablets etc. However, while performing the SORS experiments, it was observed that due to the restriction in geometry imposed by the method, the signals from the inner-layers could be obtained only up to a certain depth. This posed a serious limitation of SORS for practical scenarios, where the thickness of the outer layer may be tens of mm. In such situation, SORS may not be an effective method. We then performed Raman experiments using a transmission geometry using a series of samples. The transmission Raman (TR) experiments yielded better SNR for the inner (concealed) material as compared to the outer material. Although transmission Raman experiments yielded better signal but these experiments were again geometry dependent, hence, less flexible and TR experiments did not provide information about the position of the underlying materials. In order to obtain complete information, it was necessary to understand photon migration in a multiple scattering medium. It is known that a photon in a multiple scattering medium may be approximated to undergo a random-walk. Statistically, the photon that undergoes multiple scattering in a medium loses its sense of origin (direction), hence, there is a finite probability to observe the exiting photon in any direction. Rayleigh and NIR based imaging modalities have been conducted using this model. Diffuse optical tomographic (DOT) measurements also deal with measuring the photons that have exited the sample after undergoing multiple scattering in a turbid medium. If it was possible to collect the Rayleigh photons or the diffuse photons in DOT experiments, in principle, Raman photons could also be collected from several directions. It was then proposed that if Rayleigh scattered photons can exit at 4π solid angle from a sample, then it can be assumed that some Rayleigh photons may convert to Raman photons, which in turn, shall have a finite probability to exit the sample from all the sides (4π solid angles). This idea of collecting Raman photons has never been discussed before! Thus, as expected based on the above principles, we were able to record Raman scattered photons at all angles and on all sides. This new technique has been termed as ‘Universal Multiple Angle Raman Spectroscopy (UMARS)’. Monte Carlo simulation studies were also performed to understand the distribution of photons in a multiple scattering medium. Simulation studies also revealed that Raman photons exited from all sides of the medium at varying percentages. Hence, several fiber optic probes were designed for illumination and collection to perform the UMARS experiments for samples concealed at depths beyond 20 mm. UMARS was not only applied successfully for the detection of concealed explosives, but also for biologically relevant samples as well. In fact a pharmaceutical tablet as thick as 7 mm was also tested with UMARS and signals could be successfully obtained. Since the UMARS signals were obtained from all possible angles, imaging experiments were also conducted to obtain sample specific information. Frequency-specific images of bilayer materials could be obtained. In the case where one material was concealed within another, the reconstruction of the frequency-specific intensities in a contour plot revealed the position of the concealed layer. One of the most challenging and exciting studies that was conducted was to use UMARS to obtain shapes of hidden materials. Several shapes such as dumbbell, ellipsoid etc were fabricated (made of glass) and were filled with a test chemical, trans-stilbene (TS). This shape was placed inside an outer material like ammonium nitrate (AN) that was taken in a glass beaker. The diameter of the beaker was varied from 25 mm to 60 mm. A series of UMARS measurement was carried out with 10 collection fiber optic probes. The spatial resolution (vertical) was varied from 200 μm to 1 mm. Series of UMARS images were obtained which were then processed and the intensity of the individual fibers were averaged (CCD row pixels) based on the image of the individual fiber on the CCD. The frequency specific intensity of the materials was utilized to reconstruct 2D or a 3D shape. The shapes of the objects could be clearly discerned using UMARS imaging. This marks a major step for the development of UMARS as a 3D imaging modality. UMARS experiments conducted so far have affirmed our belief that this technology can be used as an effective technique for screening solid and liquid samples at airports, railway stations and other entry points. 3D imaging for biomedical diagnostics will provide molecular information in addition to the location and shape of an object inside a tissue such as calcified masses and bones. In the final part of the thesis, 2D Raman correlation spectroscopic method was applied to understand the dynamics of a system that was subjected to external perturbation. In the field of explosive processing and formulations, large batches are generally prepared. However, it is very difficult to ascertain the molecular or structural changes that occur during the processing of these formulations in situ. Analytical methods to monitor the changes online are limited. Raman spectroscopy can be an effective technique for such measurements. This process however, generates a large number of spectra. In such cases, it becomes cumbersome to handle such large number of data and obtain meaningful information. 2D correlation spectroscopy can be applied under such situations. 2D correlation analysis generates essentially two maps, synchronous and asynchronous. In this study, 2D Raman correlation spectroscopy was applied to ammonium nitrate that was subjected to temperature variations. 2D maps were constructed to obtain information about the structural changes associated with temperature. The synchronous map reveals the overall similarity of the intensity changes. Whereas, the 2D asynchronous maps provide the sequence of changes that occur. Based on the set of well defined rules proposed by Isao Noda, the synchronous and the asynchronous correlation maps were analysed. Hence, generalized 2D correlation spectroscopy can be extended to any kind of perturbation and will prove useful in understanding the structural dynamics. The objective of the thesis was to explore various facets of Raman spectroscopy that would be useful in the field of high energy materials specifically in the detection of explosives. Attempts were made for the development of trace detection of explosives using Raman based technique, SERS. In addition, bulk detection of concealed explosives was performed non-invasively using SORS and UMARS. In the field of high energy materials, these techniques will find immense applications. Raman spectroscopy, as we saw is a very important technique that can be used as a stand-alone method and can also be interfaced with other analytical or imaging modalities. This treatise is an example where the strength of this powerful spectroscopic method has been explored to some extent.

Raman optical activity (ROA) is a powerful probe of the structure and behaviour of biomolecules in aqueous solution for a number of important problems in molecular biology. Although ROA is a very sensitive technique for studying biological samples, it is a very weak effect and the conditions of high concentration and long data collection time required limit its application for a wide range of biological samples. These limitations could possibly be overcome using the principle of surface enhanced Raman scattering (SERS). The combination of ROA with SERS in the form of surface enhanced ROA (SEROA) could be a solution for widening the application of ROA. In the last few years, the generation of reliable SEROA spectra of biomolecules has been problematic due to non-homogenous colloidal systems forming and low signal-to-noise ratios which complicated detection of the true SEROA signal from the analyte. L- and D-enantiomers give full or partially mirror image chiroptical spectra, this property of enantiomers can be employed to prove the chiroptical activity of the SEROA technique. In this thesis we employed a hydrophilic polycarbopol polymer as stabilising media which has led to the first report of mirror image SEROA bands for enantiomeric structures. This new technique of incorporating the hydrogel polymer as a means to stabilise the colloidal system has proven to be reliable in obtaining high quality SEROA spectra of D- and L-enantiomers of ribose and tryptophan. In an extension of the hydrogel-stabilised SEROA work, we also demonstrate that single nanoparticle plasmonic substrate such as silver silica nanotags can enhance the weak ROA effect. These dye tagged silica coated silver nanoparticles have enabled a chiral response to be transmitted from a chiral analyte to the plasmon resonance of an achiral metallic nanostructure. The measurement of mirror image SERROA bands for the two enantiomers of each of ribose and tryptophan was confirmed for this system. The generation of SEROA for both systems was achieved and confirmed SEROA as a new sensitive tool for analysis of biomolecular structure. In a related project, Raman and ROA spectra were measured for adenosine and seven of its derivative ribonucleotides. Both of these spectroscopic techniques are shown to be sensitive to the site and degree of phosphorylation, with a considerable number of marker bands being identified for these ribonucleotides. Moreover, the SERS studies of these ribonucleotides were also performed. The obtained SERS spectra were shown similar features that confirm these analytes interact with the surface in a similar manner, hence limiting the structural sensitivity of this method towards phosphate position. Short dipeptides such as diketopiperazine (DKP) have been investigated during the last decades as both natural and synthetic DKPs have a wide variety of biological activities. Raman and ROA spectra of linear and cyclic dialanine and diserine were measured to charecterize their solution structures. Density functional theory (DFT) calculations were carried out by a collaborator to assist in making vibrational band assignments. Considerable differences were observed between the ROA bands for the cyclic and linear forms of both dialanine and diserine that reflect large differences in the vibrational modes of the polypeptide backbone upon cyclicization. In this study, the ROA spectra of cyclic dialanine and diserine have been reported for the first time which demonstrated that ROA spectroscopy when utilised in combination with computational modelling clearly provides a potential tool for characterization of cyclic peptides.

<p>Noble metal nanostructures display collective oscillation of the surface conduction electrons upon light irradiation as a form of localized surface plasmon resonance (LSPR) properties. Size, shape and the refractive index of surrounding environment are the key features that controls the LSPR properties. Surface passivating ligands have the ability to modify the charge density of nanostructures to allow resonant wavelength to match that of the incident light, a phenomenon called “plasmoelectric effect,”. According to the drude model Red and blue shifts of LSPR peak of nanostructures are observed in the event of reducing and increasing charge density, respectively. However, herein we report unusual LSPR properties of gold triangular nanoprisms (Au TNPs) upon functionalization with para-substituted thiophenols (X-Ph-SH, X = -NH₂, -OCH₃, -CH₃, -H, -Cl, -CF₃, and -NO₂). Accordingly, we hypothesized that an appropriate energy level alignment between the Au Fermi energy and the HOMO or LUMO of ligands allows delocalization of surface plasmon excitation at the hybrid inorganic-organic interface, and thus provides a thermodynamically driven plasmoelectric effect. We further validated our hypothesis by calculating the HOMO and LUMO levels and also work function changes of Au TNPs upon functionalization with para substituted thiol. We further utilized our unique finding to design ultrasensitive plasmonic substrate for biosensing of cancer microRNA in bladder cancer and owe to unpresidential sensitivity of the developed Au TNPs based LSPR sensor, for the first time we have been utilized to analysis the tumor suppressor microRNA for more accurate diagnosis of BC. Additionally, we have been advancing our sensing platform to mitigate the false positive and negative responses of the sensing platform using surface enhanced fluorescence technique. This noninvasive, highly sensitive, highly specific, also does not have false positives technique provide strong key to detect cancer at very early stage, hence increase the cancer survival rate. Moreover, the electromagnetic field enhancement of Surface-Enhanced Raman Scattering (SERS) and other related surface-enhanced spectroscopic processes resulted from the LSPR property. This dissertation describes the design and development of entirely new SERS nanosensors using flexible SERS substrate based on unique LSPR property of Au TNPs and developed sensors shows excellent SERS activity (enhancement factor = ~6.0 x 106) and limit of detection (as low as 56 parts-per-quadrillions) with high selectivity by chemometric analyses among three commonly used explosives (TNT, RDX, and PETN). Further we achieved the programable self-assembly of Au TNPs using molecular tailoring to form a 3D supper lattice array based on the substrate effect. Here we achieved the highest reported sensitivity for potent drug analysis, including opioids and synthetic cannabinoids from human plasma obtained from the emergency room. This exquisite sensitivity is mainly due to the two reasons, including molecular resonance of the adsorbate molecules and the plasmonic coupling among the nanoparticles. Altogether we are highly optimistic that our research will not only increase the patient survival rate through early detection of cancer but also help to battle the “war against drugs” that together is expected to enhance the quality of human life. </p> <p> </p>

Im Rahmen dieser Arbeit wurden die Wechselwirkung von Indium (In) und Magnesium (Mg) als Topelektroden auf zwei Perylen-Derivativen, 3,4,9,10-Perylentetracarbonsäure Dianhydrid (PTCDA) und Dimethyl-3,4,9,10- Perylentetracarbonsäure Diimid (DiMe-PTCDI) untersucht. Die Metal/organische Schichten wurden auf S-passivierten GaAs(100):2x1-Substraten hergestellt und unter Ultrahochvakuum (UHV)-Bedingungens aufgedampft. Als Hauptcharakterisierungsmethode wird die Raman-Spektroskopie eingesetzt, die eine nicht-destruktive Methode ist,und auch in situ Untersuchungen des Wachstumsprozesses ermöglicht. Die experimentell Ergebnisse haben gezeigt, dass alle aufgedampft Metallen auf die organische Schichten von PTCDA und DiMe-PTCDI eine Verstärkung des aktive Raman Signals von interne Schwingungsmoden fördern, begleitet durch die Aktivierung von normalerweise Infrarotaktivemoden. Diesem Phänomen als Oberflächenverstärkte Raman-Spektroskopie (SERS) genannt ist. Das Mg Wachstum auf beiden Molekularstrukturen wurde durch die viel niedrigere Diffusion des Metalls in die organischen Molekülen im Vergleich zum Indium, es war durch die Bewahrung des von externe molekulare Schwingungsmoden nach das Metallswachstum, und in ersten Mal in einem Ramanexperiment beobachtet. Die PTCDA/Mg Strukturen formen sich durch zwei Stufen des Metallwachstum, die erste gehört zu einer neuen molekularen Struktur für eine Mg Schicht dünner als 2.8 nm, wo das PTCDA Molekühl des Sauerstoff-Atoms von die dianhydride Gruppe verliert. Die zweite gehört zu das SERS Spektrum von die vorherige Struktur. Im Fall von Mg/DiMe-PTCDI Heterostrukturen, den Molekühl wird gut bewahrt, wo die Raman Verschiebung an der diimide Gruppe wird nicht modifiziert. Auch von dieser Struktur eine interessante Eigenschaft wurde durch die Kopplung zwischen diskret Moleküleigenschwingungen am 221 cm^-1, 1291 cm^-1 und 1606 cm^-1 des organischen Materials und den elektronischen Kontinuum-Zuständen des Mg-Metallkontakts. Ihre entsprechenden Energieliniengestalten werden gut durch die Breit-Wigner-Fano-Funktion beschrieben. Die Untersuchungen auf dem vorherigen Heterostrukturen half, die Kanalbildung von Pentacen-basierten organische Feldeffekt-Transistoren (OFETs) experimentell zu analysieren, und in ersten Mal in einem Ramanexperiment durchgeführt. Der organische Kanal war gebildet durch die organische Molekularstrahldeposition (OMBD) unter UHV-Bedingungens der Pentacen Moleküle, und es war mit eine Evaporationsrate von ca. 0.65 Å/min aufgedampft. Nach jede Aufdampfung von ca. 0.1 nm des organische Moleküle, den Strom und den Ramansignal in den Kanal wurden in situ gemessen. Die minimale nominelle Dicke des organischen Materials erforderlich für den effizienten Ladungstransport durch den OFET Kanal wurde um ungefähr 1.5 nm nomineller Einschluss oder 1.1 Monolagen (ML) zu sein. Eigenschaften der ersten Monolagen werden gut im Vergleich mit dickeren Schichten definiert, wo die 1.1 ML eine gestrecktes Natur wegen seines direkten Kontakts mit dem Gate-Isolator präsentieren. Es wurde gefunden, dass der leitende organische Kanal bzw. -organische erhöhende Schicht (OBL)- eine Druckdeformierung hat. Dieses Phänomen durch die rote Verschiebung der Ramanbanden beobachtet war. Das Ausgangskennlinienfeld des OFETs wurden nach die letzte aufgedampft organische Schicht gemessen. Es wurde gefunden, dass der Drain-Strom einem Relaxationsprozesse mit zwei Zeitkonstanten hat, wo eine in der Ordnung von 10¹ min ist und die zweite unter 10² min. Ein ähnliches Experiment mit der Beleuchtung des Kanals mit einer 676.4 nm Laserquelle, es erhöht der Drain- Strom und lässt ummodifiziert die Zeitkonstanten. In der Ergänzung, die OFET-Strukturen waren ex situ durch Landungstransientspektroskopie (QTS) unstersucht. Die QTS Spektren zeigten positive und negative Banden zum Gesamtsignal der relaxierte Ladung in Bezug auf die einzigartige Biaspulsepolarität. Wir haben dieses Phänomen als ,,anomales Verhalten des QTS-Signals“ genannt, und in ersten Mal in einem QTS-Experiment beobachtet. Bei Wiederholung der QTS-Messung innerhalb ca. 100 min, die QTS-Spektre eine langsame Relaxationsprozesse von Störstellen am 5 μs in bereich ca. 63 min < 10^2 min hat. Die Einfangsquerschnitten sind Zeitabhängig, es bedeutet, dass die Störstellendichte nicht Konstant im Lauf der Betriebs des OFET bleibt. Dafür des Drain-Strom verändert sich und die Beweglichkeit unabhängige des elektrisches Feld ist. Experimentell Untersuchungen auf dem OFETs mit der Kombination der Ramanspektroskopie und elektrischen Felder zeigten eine Erhöhung des Ramanseinfangsquerschnitt in endliche Bereich als die chemische SERS-Verstärkung von In bzw. Mg auf die Perylen-Derivativen PTCDA und DiMe-PTCDI. Nach den Ausschaltung des elektrisches Felds den Ramansignal des Pentacen-basierten OFET eine Relaxationsprozesse mit Zeitkonstant von ca. 94 min hat. Deshalb ist die Summe von Störstellensdichte wegen dieser am organische/anorganische Grenze plus dieser dass die elektrisches Felds am die organische Halbleiter induziert.

Surface-enhanced Raman scattering (SERS) microscopy is a novel method of optical imaging for the localization and quantification of target molecules in cells and tissue specimens. The major advantages of SERS over fluorescence are quantification and spectral multiplexing due to the small line width of vibrational Raman bands. The position of the plasmon band of both hollow gold/silver nanoshells and silica-encapsulated gold nanoclusters can be tuned for maximum SERS enhancement upon red laser excitation, which is optimal for minimizing the disturbing autofluorescence of tissue. In this work, silica-encapsulated and non-encapsulated SERS particles were used for the localization of target proteins in prostate tissue specimens. Two different biofunctionalization methods were established for each type of SERS particles. The cross-linking method based on s-NHS/EDC chemistry was modified for covalently conjugating proteins to hollow gold/silver nanoshells and gold nanostars in order to minimize the aggregation of SERS nanoparticles during and after cross-linking. As an alternative to covalent conjugation chemistry, the noncovalent binding of antibodies to the SERS particles via an adapter protein (protein A/G) was established. The influence of several factors that determine the quality of results obtained by SERS imaging, such as the number of immuno-SERS conjugates, incubation time, antigen retrieval and blocking buffer, were investigated. Rapid SERS microscopy with 30 msec acquisition time per pixel was enabled by using silica-encapsulated gold nanoclusters for the localization of p63 proteins on prostate tissue specimens from healthy donors. Two-color SERS experiments for the parallel localization of PSA and p63 were performed with silica-encapsulated and non-encapsulated nanoshells. The quality of the results depends less on the nature of the surface chemistry of the nanoparticles (with or without silica encapsulation), but more on the blocking buffer and the antigen retrieval method. Silica-encapsulated gold nanoclusters were also used for the simultaneous quantification of three cytokines (IL1, IL8 and TNF- α) in a SERS-based sandwich immunoassay with a detection limit of ca. 0.3 pM. Keywords: Raman, SERS microscopy, biocompatibility of nanoparticles, cross-linking, antigen unmasking methods, antigen detection, immunohistochemistry, immunoassay.

No description available.

Diese Arbeit ist ein empirischer Versuch zu verstehen, warum und wie Energieunternehmen Nachhaltigkeit durch Sustainability Accounting and Reporting institutionalisieren und wie sie von zahlreichen institutionellen Mechanismen im Rahmen der Institutionentheorie und der Stakeholder sowie aus deren Ansprüchen im Rahmen der Stakeholder Theorie beeinflusst werden, Theorien, die sich gegenseitig bedingen. Diese Arbeit möchte sich anhand normativer und deskriptiver Literatur über die Praktikabilität des Konzeptes und der Systeme informieren und durch die Entwicklung einer Fallstudie ein praktisches Beispiel vorstellen. Ziel dieser Arbeit ist die Entwicklung eines unternehmerischen Nachhaltigkeitssystems des Fallbeispielunternehmens, das pragmatisch zielgetrieben und – basierend auf den strategischen Schwerpunkten des Managements – auf die Einflüsse und Ansprüche der Stakeholder abgestimmt ist. Dafür wird die Fallstudie das Konzept des Sustainability Accounting and Re-porting anhand des regionalen Energieversorgungsunternehmens ReVU untersuchen und die Institutionalisierung prüfen. Im Rahmen der Stakeholderanalyse werden auch die Branche und der Wettbewerb auf ihre Nachhaltigkeit untersucht. Somit ist zu überprüfen, ob auch für ReVU Nachhaltigkeit ein Thema ist, in welcher Form und Ausprägung es zu implementieren wäre und welchen Nutzen es überhaupt bringen könnte. Im Ergebnis ist zu sehen, dass verschiedene institutionelle Mechanismen und das Stakeholdermanagement auf das nachhaltige Handeln des Unternehmens einwirken. Besonders ist im Moment der normative Druck der gesellschaftlichen Erwartungen aufgrund aktueller Ereignisse zu spüren, der auf die regulative Gesetzgebung der Energie- und Klimapolitik wirkt und die Energiewende beschleunigt. Diese nachhaltige Entwicklung ist auch kulturell-kognitiv in der Branche und bei den Wettbewerbern zu sehen. Dadurch ist ein deutlicher Wettbewerbsdruck zu bemerken, der auf dem Zusammenspiel von normativen, regulativen und kulturell-kognitiven Mechanismen beruht und durch das mimetische Verhalten zu einem Isomorphismus von nachhaltigen Strategien und Maßnahmen sowie Managementsystemen mit dem besonderen Bezug zur Ökologie führt.

Die Raman-Spektroskopie ist eine der nützlichsten optischen Methoden zur Untersuchung der Phononen organischer und anorganischer Materialien. Mit der fortschreitenden Miniaturisierung von elektronischen Bauelementen und der damit einhergehenden Verkleinerung der Strukturen von der Mikrometer- zur Nanometerskala nehmen das Streuvolumen und somit auch das Raman-Signal drastisch ab. Daher werden neue Herangehensweisen benötigt um sie mit optischer Spektroskopie zu untersuchen. Ein häufig genutzter Ansatz um die Signalintensität zu erhöhen ist die Verwendung von Resonanz-Raman-Streuung, das heißt dass die Anregungsenergie an die Energie eines optischen Überganges in der Struktur angepasst wird. In dieser Arbeit wurden InAs/Al(Ga)As-basierte Multilagen mit einer Periodizität unterhalb des Beugungslimits mittels Resonanz-Mikro-Raman-Spektroskopie und Raster-Kraft-Mikroskopie (AFM) den jeweiligen Schichten zugeordnet. Ein effizienterer Weg um die Raman-Sensitivität zu erhöhen ist die Verwendung der oberflächenverstärkten Raman-Streuung (SERS). Sie beruht hauptsächlich auf der Verstärkung der elektromagnetischen Strahlung aufgrund von lokalisierten Oberflächenplasmonenresonanzen in Metallnanostrukturen. Beide oben genannten Signalverstärkungsmethoden wurden in dieser Arbeit zur oberflächenverstärkten Resonanz-Raman-Streuung kombiniert um geringe Mengen organischer und anorganischer Materialien (ultradünne Cobalt-Phthalocyanin-Schichten (CoPc), CuS und CdSe Nanokristalle) zu untersuchen. Damit wurden in beiden Fällen Verstärkungsfaktoren in der Größenordnung 103 bis 104 erreicht, wobei bewiesen werden konnte, dass der dominante Verstärkungsmechanismus die elektromagnetische Verstärkung ist. Spitzenverstärkte Raman-Spektroskopie (TERS) ist ein Spezialfall von SERS, bei dem das Auflösungsvermögen von Licht unterschritten werden kann, was zu einer drastischen Verbesserung der lateralen Auflösung gegenüber der konventionellen Mikro-Raman-Spektroskopie führt. Dies konnte mit Hilfe einer Spitze erreicht werden, die als einzelner plasmonischer Streuer wirkt. Dabei wird die Spitze in einer kontrollierten Weise gegenüber der Probe bewegt. Die Anwendung von TERS erforderte zunächst die Entwicklung und Optimierung eines AFM-basierten TERS-Aufbaus und TERS-aktiver Spitzen, welche Gegenstand dieser Arbeit war. TERS-Bilder mit Auflösungen unter 15 nm konnten auf einer Testprobe mit kohlenstoffhaltigen Verbindungen realisiert werden. Die TERS-Verstärkung und ihre Abhängigkeit vom Substratmaterial, der Substratmorphologie sowie der AFM-Betriebsart wurden anhand der CoPc-Schichten, die auf nanostrukturierten Goldsubstraten abgeschieden wurden, evaluiert. Weiterhin konnte gezeigt werden, dass die hohe örtliche Auflösung der TERS-Verstärkung die selektive Detektion des Signals weniger CdSe-Nanokristalle möglich macht.

Ce travail de thèse se focalise sur le couplage du microscope à force atomique haute–vitesse (HS-AFM) et de la spectroscopie Raman exaltée de surface (SERS) pour la détection des biomolécules. Nous avons élaboré un protocole de fabrication pour produire les substrats “SERS-actifs”. L’efficacité des substrats de nanoparticules cristalline d’or, d’argent ou bimétallique argent–or a été évaluée. Nous avons étudié l’impact des propriétés optiques et morphologiques des substrats sur l’intensité Raman en analysant des échantillons tests tels que la bipyridine éthylène et le bleu de méthylène. Nous nous sommes interessés à trois problematiques biologiques distinctes par analyses HS-AFM et SERS. Dans un premier cas, nous avons détecté la signature chimique de protéine cytochrome b5. Ce travail a été suivi par des études sur le changement de conformation de la protéine de choc thermique leuconostoc oenos Lo 18 en fonction de la concentration et du pH. La dernière application consiste en l’analyse des interactions membrane – virus. Afin de réaliser les analyses simultanées Raman/AFM, nous avons adapté notre protocole de fabrication pour couvrir la surface des pointes AFM commerciales par des nanoparticules d’or cristallines. Les études de diffusion Raman exaltée par effet de pointe (TERS) ont été effectuées sur les échantillons de disulfure de molybdène pour évaluer la qualité des pointes TERS. Pour finir, nous présentons une nouvelle configuration de couplage HS-AFM et spectroscopie Raman. Nous discutons des modifications et des défis rencontrés. / This thesis focuses on the coupling of High–Speed Atomic Force Microscopy (HS-AFM) and Surface Enhanced Raman Spectroscopy (SERS) for biomolecule analysis. We have designed a fabrication protocol to manufacture “SERS-active” substrates. The efficacy of gold, silver and gold-silver bimetallic crystalline nanoparticle substrates were evaluated. We have investigated the impact of optical and morphological features of the substrates on Raman signal intensity by analyzing well-known samples such as bipyridine ethylene and methylene blue molecules. We took an interest in three distinct biological problematics with HS-AFM and SERS analyses. First, we have detected the chemical signature of cytochrome b5 protein. This study was followed by the investigation of conformational changes of small heat shock leuconostoc oenos Lo 18 protein in function of pH level and concentrations. The last application consists to the analyse a membrane and a virus interaction. In order to realize simultaneous Raman/AFM analysis, we have adapted our fabrication protocol to cover the surface of commercial AFM probes by crystalline gold nanoparticles. Tip – Enhanced Raman Spectroscopy (TERS) studies were performed on molybdenum disulfide to evaluate the quality of TERS probes. In the last part of this work, we have designed a new setup to combine Ando’s HS-AFM setup with Raman spectroscopy. We present the modifications that have been carried out and the challenges that we have encountered.