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Les poudres propulsives pour armes sont des matériaux énergétiques dont la combustion permet l’accélération de projectiles jusqu’à des vitesses importantes. Ces matériaux énergétiques sensibles peuvent être soumis à de fortes contraintes (chocs, impacts et incendies) lors de leur utilisation. Le remplacement de certaines substances entrant dans leur formulation permet de diminuer leur vulnérabilité. En conséquence, ces poudres propulsives présentent une dynamique d’allumage différente. Ce travail de recherches est consacré à l’allumage des poudres propulsives pour armes et se présente en quatre chapitres. Un état de l’art sur le sujet est réalisé. Il porte en particulier sur la phénoménologie de l’allumage, la caractérisation de poudres propulsives, et la modélisation de l’allumage. Deux poudres propulsives sont expérimentalement analysées par thermogravimétrie, calorimétrie et spectrométrie de masse. Cette analyse permet de caractériser les différentes étapes cinétiques de la dégradation thermique de ces poudres propulsives. Un code de modélisation biphasique 2D est développé pour servir de support à la comparaison de modèles d’allumage. Le modèle implémenté décrit la chambre de combustion du canon dans les premières phases du coup de canon, lorsque le lit de poudre propulsive est compacté et que les gaz issus du dispositif pyrotechnique d’allumage le parcourent. Un modèle d’allumage est développé à partir des résultats expérimentaux obtenus au deuxième chapitre. Le code de calcul précédemment évoqué permet de comparer l’influence de différents modèles sur la propagation de l’allumage. / Gun Propellants are energetic materials whose combustion can accelerate projectiles to high speeds. These sensitive energetic materials can be subjected to high stresses (shocks, impacts and fires), potentially able to ignite them. The modification of their chemical formulation reduces such vulnerability. Consequently, these propellants have different ignition dynamics. This work focuses on the ignition of gun propellants and comes in four chapters. A state of the art on the subject is firstly made. It focuses on the phenomenology of the ignition and on energetic materials experimental characterization, and modeling of their ignition. Two gun propellants are experimentally analyzed by thermogravimetry, calorimetry and mass spectrometry. This analysis allows characterizing the various stages of the degradation kinetics of these propellants. A 2D biphasic modeling code was developed to provide support for the comparison of ignition models. It describes the combustion chamber in the early stages of the gun firing, when the propellant bed is compacted and the gases from the pyrotechnic igniter are flowing through it. An ignition model is developed from the experimental data obtained in the second chapter. The previously mentioned modeling code allows comparing the influence of different ignition models on the spreading speed of the ignition signal through the packed bed of propellant.

A Emodina (EMH) é uma das antraquinonas mais abundantes na natureza. Essa molécula vem sendo largamente usada como material de estudo científico por apresentar diversas atividades farmacológicas, tais como antiviral, antitumoral, antifungal, digestiva e outras. É conhecido que a Emodina em solução aquosa alcalina pode sofrer mais de um processo de desprotonação, apresentando-se na forma desprotonada, EM-, após a primeira desprotonação. Nesta tese de doutorado estudamos as propriedades estruturais e eletrônicas da molécula Emodina em meio solvente e em bicamadas lipídicas a fim de caracterizar as propriedades relacionadas à espectroscopia UV-Vis, à reatividade e à termodinâmica dessa molécula nesses ambientes. Realizamos cálculos quânticos com a Emodina em vácuo e em meio solvente, onde consideramos todos os possíveis sítios de desprotonação. Como resultados desses cálculos, identificamos os sítios da primeira, segunda e terceira desprotonação. Calculamos o pKa1 da Emodina em água e o pK*a1 em metanol através de simulações computacionais com o método Monte Carlo e cálculos quânticos, com o solvente descrito com o modelo contínuo polarizável. Nossos melhores valores para o pKa1 da Emodina determinados nesses solventes foram 8.4±0.5 e 10.3±1.5, que estão em boa concordância com os valores experimentais, (pKa1=8.0±0.2 e pK*a1=11.1±0.1) obtidos nesta tese para Emodina em água e metanol, respectivamente. Adicionalmente realizamos simulações com Dinâmica Molecular com as espécies EMH e EM- em bicamada lipídica de DMPC, para investigar a nível atômico as interações dessas espécies com a bicamada e determinar as posições preferenciais dessas espécies nesse ambiente anfifílico. Os resultados dessas simulações mostraram que as espécies EMH e EM- ficam inseridas na bicamada, na região polar dos lipídios, próximos aos gliceróis. Esses resultados corroboram as nossas medidas do espectro de absorção dessas espécies em bicamada lipídica, onde mostramos de forma qualitativa, que ambas as espécies ficam inseridas na bicamada, na região das cabeças polares dos lipídios. A análise das propriedades estruturais da bicamada na vizinhança das espécies da Emodina como área por lipídio e densidade eletrônica dos lipídios, mostrou que o efeito da EM- na estrutura da bicamada lipídica é maior do que o da EMH. Esses resultados corroboram as nossas medidas de DSC(Differential Scanning Calorimetry) das espécies da Emodina na bicamada. / Emodin (EMH) is one of the most abundant anthraquinone derivatives found in nature. This molecule has been used widely as research material, due to its biological and pharmacological activities such as antiviral, anticancer, antifungal, digestive and antibacterial activities. It is known that Emodin in alkaline aqueous solution can undergo more than one deprotonation, leading to the specie EM- in the first deprotonation process. In this PhD thesis, we studied the structural and electronic properties of this molecule in several solvents and lipid bilayers, in order to characterize the properties related to UV-Vis absorption spectroscopy, reactivity and thermodynamics of this molecule in these environments. Performing quantum mechanics (QM) calculations for all possible deprotonation sites and tautomeric isomers of Emodin in vacuum and in water, we identified the sites of the first, second and third deprotonations. We calculated the pKa1 of Emodin in water and pK*a1 in methanol with free energy perturbation method, implemented in the Monte Carlo simulation, and with QM calculations, where the solvent was treated as a polarizable continuum medium. Our best values for pKa1 of Emodin in these solvents were 8.4±0.5 and 10.3±1.5, which are in very good agreement with the experimental values obtained in this thesis pKa1=8.0±0.2 and pK*a1=11.1±0.1, for water and methanol, respectively. Additionally, we performed molecular dynamics simulations of both species in fully hydrated lipid bilayers of DMPC to investigate at atomic detail the molecular mechanism of the interaction of these species with lipid membrane and its preferred positions in this amphiphilic environment. As results of these simulations, we obtained that both species of Emodin have a strong tendency to insert into the lipid bilayer, remaining near the glycerol group of DMPC. These results corroborate our measured absorption spectra of these species in the bilayer, which qualitatively showed that both species are within the bilayer, inserted in the lipid headgroup region. Our results also show that the effect of EM- specie in the lipid bilayer structure is stronger than the EMH, which corroborate our DSC(Differential Scanning Calorimetry) measurements.

A doença de Chagas, causada pelo protozoário flagelado Trypanosoma cruzi, é uma doença tropical que enseja morte/morbidade de milhões de pessoas na América Latina. Por processos migratórios, vem-se estendendo ao sul dos Estados Unidos, Canadá, Europa, Austrália e Japão. Essa doença tem sido considerada super-negligenciada pela indústria farmacêutica, já que os dois fármacos disponíveis para o seu tratamento foram introduzidos há mais de quarenta anos e apresentam baixa eficácia com vários efeitos colaterais severos. Mais recentemente, a Organização Mundial da Saúde considerou a doença de Chagas, dentre outras, como a doença da pobreza! Com esse cenário completamente desfavorável aos portadores da doença, é necessária a descoberta, desenvolvimento e introdução de novos fármacos para o tratamento eficiente e seguro da doença de Chagas. <br />Dentro desse contexto, este trabalho representa uma importante contribuição para o entendimento das razões moleculares da ação farmacológica de substâncias químicas bioativas de interesse à farmacoterapia da doença de Chagas. Ao nível molecular, a enzima pertencente à via de síntese de novo de nucleotídeos de pirimidinas, diidroorotato desidrogenase do Trypanosoma cruzi (TcDHODH), é um alvo promissor para a descoberta e desenvolvimento de candidatos a fármacos de interesse para o tratamento da doença de Chagas. <br />Os conceitos e ferramentas da química medicinal computacional, tais como os ensaios virtuais in silico, foram usados para a identificação de inibidores da TcDHODH. Vinte e seis substâncias inéditas como inibidores da TcDHODH foram adquiridos comercialmente e avaliados experimentalmente através da Calorimetria de Titulação Isotérmica (ITC) para a determinação do mecanismo de inibição e da constante cinética de afinidade (Kiapp). <br />Na etapa de docagem molecular, o objetivo era identificar moléculas que apresentassem uma boa afinidade pelo sítio ativo da enzima TcDHODH. A primeira série de ligantes selecionados dos métodos in silico, apresentou inibição enzimática na concentração de micromolar com eficiência média de ligante de 0,50 kcal mol-1 átomo-1. Devido à baixa massa molecular (aproximadamente 200 kDa) e a alta eficiência de ligante, essa série foi considerada como constituída de excelentes substâncias com elevado poder de reconhecimento biomolecular. Por isso, foram caracterizadas como substâncias passíveis de otimização no processo do-ligante-para-substância matriz. <br />As enzimas TcDHODH e DHODH de Leishmania major (LmDHODH) têm sítios ativos com elevado grau de similaridade. Portanto, usando a enzima LmDHODH como padrão de substituição da TcDHODH é possível fazer a descrição do modo de interação do co-complexo TcDHODH-inibidor. O modo de ação descrito através da resolução da estrutura cristalográfica de raios-X, além de validar ortogonalmente os resultados cinéticos obtidos por ITC - que identificou as substâncias como inibidores competitivos (por interação direta no sítio ativo da enzima TcDHODH), geraram hipóteses farmacofóricas para a busca de novas moléculas (chamadas de segunda geração), agora com padrão superior de reconhecimento molecular do sítio da TcDHODH. Para validar complementarmente a hipótese, foi demonstrado que os inibidores da TcDHODH inibem, similarmente, a LmDHODH. <br />Uma análise cuidadosa da estrutura tridimensional da enzima TcDHODH, demostrou a possibilidade de ocupação do sítio S2 que se estende além da região do sítio catalítico S1, permitindo assim o aumento da afinidade biomolecular com os inibidores. Além disso, o sítio S2 não é encontrado na estrutura da proteína de humanos (HsDHODH), podendo ser uma região passível de seletividade frente à enzima TcDHODH. <br />O emprego adequado dessa hipótese resultou na otimização dos ligantes identificados previamente para substâncias mais potentes que inibiram a enzima de forma competitiva em relação ao substrato diidroorotato (DHO) em valores Kiapp de 121 &plusmn; 14 nM e 190 &plusmn; 10 nM. <br />A técnica de ITC foi fundamental no processo de descoberta de inibidores enzimáticos, pois se mostrou extremamente susceptível à determinação da interação intermolecular enzima-inibidor, permitindo acompanhar a cinética da reação e obter os valores da constante de afinidade de maneira precisa e acurada. Com isso, a taxa de acerto obtida nesta tese foi de 46%, considerando-se apenas as substâncias com valores de Ki app < 100 &micro;M. Esse é um número favoravelmente apreciável, já que na literatura ele gira em torno de 1-10% quando o planejamento in silico é realizado, quando comparado às taxas de acerto dos métodos de ensaio em larga escala (HTS), entre 0-2 %, os resultados alcançados neste trabalho são ainda mais significativos. <br />Além disso, as substâncias químicas selecionadas através da integração de métodos in silico e biocalorimétricos apresentam elevado grau de complexidade no processo biomolecular de interação enzima-ligante, que permite classificá-las para as fases seguintes da gênese planejada de fármacos. / American trypanosomiasis or Chagas disease, caused by the haemoflagellate Trypanosoma cruzi, is a tropical disease that affects millions of people in Latin America. Epidemiology of Chagas disease in non-endemic countries is attained by immigration as the disease also affects people in the United States, Canada, Europe, Australia and Japan. However, the United States are not to be written off as an area of nonendemicity for Chagas disease like Europe or Asia because the southern states have enzootic T. cruzi transmission that involves triatomine species and hosts such as raccoons, opossums, and domestic dogs. Even though, this disease has been considered as a super-neglected from the big Pharma Industry viewpoint since the only available drugs for its treatment were introduced in the market more than forty years ago and worsen is that they have low efficacy and cause various severe side effects. <br />Although the current clinical scenario is of course discouraging and is far from being even a soothing treatment for those who suffer from the disease, it prompt ones to set efforts towards the need of discovering and developing new efficacious and safe drugs to treat Chagas disease. <br />Our research group covers the concept of enzymes acting as targets for the action of drugs. Once T. cruzi has many druggable targets, the dihydroorotate dehydrogenase enzyme (TcDHODH) that belongs to the de novo pyrimidine nucleotide synthetic pathway has been chosen for the search of new inhibitors that may be of use in the treatment of Chagas disease. To accomplish with this and considering that inhibitors are molecules that decrease enzyme activity leading to parasite death, we used the concepts and tools of modern computational medicinal chemistry such as in silico screening of small molecules that bind to the active site of the TcDHODH. <br />After a thoroughly program of virtually screening thousands of compounds, 26 were purchased from commercially available sources and experimentally assayed against the TcDHODH using Isothermal Titration Calorimetry (ITC) in order to determine the mechanism of inhibition and the kinetic affinity constant (Kiapp). <br />The first series of inhibitors selected from our in silico strategy were evaluated by ITC to yield compounds that inhibited the TcDHODH in the micromolar concentration range with an average of 0.50 kcal mol-1 atom-1 ligand efficiency (LE). Because the assayed compounds have low molecular weight (ca. 200 kDa) and high LE, which bring them to the specific bimolecular pattern recognition all of them were considered good inhibitors capable of being selected to enter the hit-to-lead optimization process. <br />The detailed description of the ligand-enzyme mode of binding (MOB) is thoroughly accomplished by solving the X ray crystal structure of the surrogate Leishmania major DHODH enzyme (LmDHODH), which has a high degree of similarity with the enzyme TcDHODH. The MOB credited to be in the active site of the TcDHODH orthogonally validated the ITC kinetic experimental data obtained for all ligands as competitive inhibitors that interact at the active site of the TcDHODH and helped to generate pharmacophoric hypotheses for the search of new second generation molecules acting against the enzyme TcDHODH.  Analyzing the 3D structure of the TcDHODH along with its surrogate LmDHODH, we envisaged the possibility of compounds to extend their side chain beyond the region of the catalytic site (called S1), and interacting in a region called S2, so to increase binding affinity. Moreover, the TcDHODH S2 site that is not found in the 3D protein structure of humans (HsDHODH) is likely to offer new insights for the search of inhibitors whose binding to this S2 site can pave the roads towards the needed structural basis for selective inhibition of TcDHODH. <br />The most potent compounds inhibited the enzyme competitively with respect to the substrate dihydroorotate (DHO) at Kiapp values of 121 &plusmn; 14 nM and 190 &plusmn; 10 nM, which constitutes high affinity TcDHODH inhibitors. The ITC technique was pivotal to this process of enzyme inhibitors discovery, because it proved to be extremely sensitive thus allowing to monitor the kinetics of the reaction and to obtain precise and accurate values of affinity constants. <br />The hit rate obtained in this work, considering only those compounds with Kiapp < 100 &micro;M, was 46%. This is a really high number, since literature values range from 1 to 10% when the planning new inhibitors via in silico methods when compared to the success rates obtained by the methods of testing on large scales (HTS), 0-2 %, the results achieved in this work are even more significant. Moreover, the compounds selected through the integration of in silico and calorimetric methods showed a high degree of complexity in the process of bimolecular enzyme-ligand recognition, which allows to pass them to the next phase of the drug design process.

En Europe, suite à la fermeture de nombreux sites sidérurgiques, une utilisation croissante de laitiers de haut-fourneau d’origine et d’âge variés voit le jour depuis plusieurs années. Cette évolution conduit à une diversification de la composition chimique et minéralogique des laitiers. Connaître l’influence de ces caractéristiques sur la réactivité des laitiers utilisés en substitution du clinker dans les ciments de haut-fourneau (CEM III) devient, dès lors, primordial pour assurer les performances de tels ciments.<p><p>Dans ce contexte, le présent travail a pour but d’investiguer l’influence de la composition chimique et de l’âge des laitiers sur leur réactivité tant par des essais physico-mécaniques que par une caractérisation physico-chimique et minéralogique de CEM III/B à différentes échéances d’hydratation. L’effet néfaste du vieillissement des laitiers est clairement mis en exergue et son impact diffère selon la composition chimique de départ du laitier. Les ions aluminium engendrent une accélération de l’hydratation et une amélioration des résistances physico-mécaniques à jeune âge mais, à long terme, ils conduisent à une perte de ces dernières. Concernant l’influence des ions titane dans les laitiers, la tendance générale observée est une diminution des performances physico-mécaniques.<p><p>Sur base de ces résultats, une évaluation de la représentativité de moyens accélérés d’estimation de la réactivité des laitiers est effectuée. Il est mis en évidence que seules les mesures de résistances physico-mécaniques classiques permettent d’évaluer correctement la réactivité des différents laitiers.<p><p>Une évaluation de la détermination de la teneur en constituants de CEM III/B par la méthode Rietveld est menée par comparaison avec la méthode de dissolution sélective de la norme EN 196-4 et le dosage des constituants par pesée. Moyennant une utilisation adaptée de cette méthode, les résultats obtenus à l’aide de celle-ci sont très encourageants.<p><p><p>In Europe, following the closure of many steel plants, an increased use of blast furnace slag (BFS) of various age and origin was born for several years. This evolution leads to a diversification of the chemical and mineralogical composition of the BFS. Knowing the influence of these characteristics on the reactivity of slag used in substitution of clinker in blast-furnace cement (CEM III) becomes, therefore, crucial to ensure the performance of such cements. <p><p>In this context, this work aims to investigate the influence of chemical composition and age of BFS on their reactivity by both physico-mechanical and physico-chemical and mineralogical characterization of CEM III/B at different times of hydration. The adverse effect of ageing of BFS is clearly highlighted and its impact varies depending on the chemical composition of the BFS. Aluminum ions generate an acceleration of the hydration and improve mechanical strength at early age, but at long term, they lead to a loss of the strength. Regarding the influence of titanium ions in the BFS, the general trend is a decrease of the physical and mechanical performance.<p><p>Based on these results, an assessment of the representativeness of accelerated means of estimating, the BFS reactivity is done. It is emphasized that only measures of physical and conventional mechanical strength can accurately assess the reactivity of different BFS. <p><p>An evaluation of the determination of the amount of CEM III/B components by the Rietveld method is based upon comparison with the selective dissolution method from the EN 196-4 norm and components determination by weight. Through appropriate use of this method, the results obtained are very encouraging.<p> / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

Dans cette thèse, nous avons effectué une étude de la stabilité thermique de quelques matériaux, utilisés comme cathodes dans les batteries au lithium-ion (BLIs), afin de contribuer à l’amélioration de leur fonctionnement. Deux matériaux, potentiellement prometteurs pour les applications d’envergure des BLIs – telles que les véhicules électriques –, ont été choisis pour cette étude. Il s’agit du phosphate de fer lithié (LiFePO4) et de l’oxyde de nickel et de manganèse de structure-type spinelle (LiMn1.5Ni0.5O4). En plus de l’étude du mécanisme de décomposition de ce dernier, l’effet de la substitution partielle du manganèse dans le matériau original (LiMn2O4) par du nickel sur la réactivité a été mise en évidence. Ces études ont été menées grâce à la calorimétrie adiabatique afin de simuler les conditions thermiques retrouvées dans des BLIs où l’environnement est quasi-adiabatique. L’effet de trois méthodes de synthèse sur la réactivité a été examiné pour LiFePO4. Nos résultats ont montré que, contrairement aux autres matériaux de cathodes, la stabilité thermique globale de LiFePO4 est peu affectée par la méthode de synthèse. Toutefois, cette stabilité intrinsèque dont le LiFePO4 bénéficie ne le met pas à l’abri des conditions d’abus de source externes. Ainsi, nous avons développé une nouvelle classe d’additifs électrolytiques pour la protection de LiFePO4 contre la surcharge. Ces derniers consistent en l’incorporation d’une navette redox dans un liquide ionique; tirant ainsi profit des avantages des deux espèces. Notre approche nous a permis d’atteindre une concentration aussi élevée qu’une mole par litre de notre additif dans des électrolytes conventionnels. Nous avons montré qu’à une concentration optimale de 0.7 M, ces liquides ioniques fonctionnalisés ont assuré la protection de LiFePO4 contre la surcharge pour plus de 200 cycles; et ce, sans affecter ses performances électrochimiques. Finalement, pour ce qui est du deuxième matériau de cathode, nous avons établi un mécanisme de décomposition de LiMn1.5Ni0.5O4 à hautes températures en présence de l’électrolyte. En plus, notre étude a montré que la substitution partielle du manganèse par le nickel dans LiMn2O4 pour augmenter son potentiel opérationnel a affecté à la baisse sa stabilité thermique; et ce, à des températures aussi basses que 60 °C. / In this thesis, we have investigated the thermal stability of cathode materials used in lithium-ion batteries (LIBs). Using accelerating rate calorimetry, the study was carried out on two of the most attractive cathode materials for large scale LIBs; namely, lithium iron phosphate (LiFePO4) and nickel-manganese spinel oxide (LiMn1.5Ni0.5O4). While the impact of partial nickel substitution for manganese in LiMn2O4 was investigated for LiMn1.5Ni0.5O4 along with its decomposition mechanism, the effect of the synthetic method was evaluated for LiFePO4. Our results have demonstrated that the high intrinsic thermal stability of LiFePO4 was only slightly affected by the synthetic method within the three studied routes. In order to enhance the safe operation of this material by providing a protection form electrical abuse during overcharge, we have developed a new class of overcharge protection additives. By combining a redox shuttle with an ionic liquid, we were able, for the first time, to dissolve the additive for protection against overcharge at concentrations up to 1 M in conventional electrolytes for LIBs. Our results have shown an overcharge protection of LiFePO4 for over 200 cycles, using an optimal concentration of 0.7 M, without compromising its electrochemical performances. Finally, by studying the thermal behavior of LiMn1.5Ni0.5O4 at different temperatures, we were able to establish the decomposition mechanism of this material. Moreover, our study has proven that the presence of nickel in LiMn1.5Ni0.5O4, that ensures the high voltage of this cathode material, is also responsible for the very poor thermal stability of this material at temperatures as low as 60 ºC.

La protéine NS5A est essentielle pour la réplication et l'assemblage du virus de l'hépatite C (VHC), et elle constitue une cible thérapeutique prometteuse pour le développement d'antiviraux. Cependant, aucune fonction claire n'a encore été décrite pour NS5A, et les connaissances structurales restent limitées. Ainsi, nous avons caractérisé l'état intrinsèquement désordonné des domaines D2 et D3 de NS5A en décrivant leurs espaces conformationnels et leurs potentialités de repliement en combinant différentes méthodes biophysiques. Nous avons aussi mis en évidence la variabilité structurale du domaine D2 au sein des génotypes du VHC, ce qui pourrait être en rapport avec les différences de pathogénie et d'efficacité des thérapies observées selon les génotypes. L'interaction de D2 et D3 avec la cyclophiline humaine A (CypA) a été étudiée par résonance plasmonique de surface (SPR). Bien que des mutations au sein du domaine D2 rendent la réplication du VHC moins dépendante de la présence de CypA, ces mutations n'empêchent pas la liaison entre D2 et CypA. En revanche, elles induisent des perturbations structurales qui pourraient affecter la cinétique d'interconversion des conformères de D2. Nous avons montré par SPR que D2 et D3 interagissent avec le domaine de fixation à l'ADN du récepteur nucléaire FXR. Cette interaction pourrait inhiber la fixation de FXR sur sa cible ADN, suggérant une implication de NS5A dans la modulation de l'activité transcriptionnelle de ce récepteur nucléaire. L'ensemble de ces informations, nous a permis de proposer un modèle de la structure globale de NS5A permettant une meilleure compréhension des propriétés structurales et fonctionnelles de cette protéine énigmatique / NS5A is essential for HCV replication and particle assembly, and constitutes a very promising drug target. However, no clear function has yet been described for NS5A, and structural knowledge remains limited. We characterized the intrinsically disordered nature of NS5A domains D2 and D3, and describe their folding propensity and their overall conformational behaviour by combining different biophysical methods. We also highlighted the structural variability of D2 domain in HCV genotypes, which might be correlated with the disparities observed between genotypes in terms of pathogenesis and efficiency of therapies. The interactions between D2 and D3 with human cyclophilin A (CypA) was analysed by surface plasmon resonance (SPR). We showed that mutations in the D2 domain conferring resistance of HCV replication to CypA inhibitors did not prevent the interaction between D2 and CypA. However, they induce structural perturbations that may affect the kinetics of conformers interconversion of D2. We also showed by SPR that D2 and D3 interact with the of DNA-binding domain of the nuclear receptor FXR (farnesoid X receptor alpha). This interaction reduce the binding of FXR to its DNA target, suggesting an involvement of NS5A in the modulation of the transcriptional activity of FXR. All this data led us to propose a model of the overall structure of NS5A, which provides a useful template for a better understanding of structural and functional properties of this enigmatic protein

L’anhydrase carbonique IX (AC IX h) est une enzyme souvent associée à un mauvais pronostic, à la progression tumorale et à la régulation du pH extracellulaire des cellules tumorales sur un plan moléculaire. L’AC IX est très peu exprimée dans les tissus sains mais par contre, elle est surexprimée au sein de la masse tumorale, ce qui permet de la qualifier comme une cible thérapeutique potentielle. Une nouvelle classe d’inhibiteurs d’anhydrase carbonique IX a été conçue et synthétisée par notre équipe. Cette série de composés présente une solubilité aqueuse faible, limitant ainsi son développement pharmaceutique. La complexation de ces composés avec des cyclodextrines offre la possibilité d’améliorer leur solubilité et leur biodisponibilité sans affecter leur structure originale. Des études de complexation entre nos composés et diverses cyclodextrines ont été réalisées, afin de déterminer le complexe supramoléculaire le plus adéquat. Les études des complexes Analyte / Cyclodextrine ont été réalisées par deux techniques complémentaires, la résonance magnétique nucléaire et l’électrophorèse capillaire. La complexation de six sulfonamidodiarylpyrazoles originaux avec six cyclodextrines (&#61537;-, &#61538;- et &#61543;- CDs, hydroxypropyle HP-&#61538;-CD, méthyle Me-&#61538;-CD ou amino NH2-&#61538;-CD) a été étudiée au pH physiologique. Les constantes de complexation, la stœchiométrie et l’étude structurale des complexes ont alors été déterminées. Par ailleurs, la présence d’un centre d’asymétrie dans la série des alcools secondaires, synthétisés sous leurs formes racémiques, a orienté nos travaux vers le développement de méthodes séparatives à l’échelle préparative afin de disposer de quantités suffisantes d’énantiomères permettant la détermination de leurs affinités pour la cible. Les séparations chirales ont été mises au point par chromatographie liquide haute performance, par chromatographie en phase supercritique ou par électrophorèse capillaire. La caractérisation de quatre analytes vis-à-vis de l’anhydrase carbonique II (AC II) a été réalisée, dans un premier temps, par des études d’interaction moléculaire utilisant des méthodes biophysiques qui ne nécessitent pas de marquage des partenaires, la résonance plasmonique de surface, la calorimétrie de titration isotherme et la thermal shift assay. L’objectif de cette comparaison était de valider les résultats obtenus mais aussi de sélectionner la méthode d’analyse permettant l’étude d’une grande série de composés avec l’isoforme d’intérêt (AC IX). Les résultats obtenus nous ont conduits à choisir la résonance plasmonique de surface (RPS) comme technique de choix pour l’étude de l’affinité des sulfonamidodiarylpyrazoles. Les affinités de seize composés pour trois isoformes (AC II, IX et XII) ont ensuite été déterminées par RPS. Des affinités de l’ordre du nanomolaire ont été obtenues pour les trois isoformes. De cette étude, deux composés possédant une affinité intéressante pour l’AC IX et une sélectivité AC IX versus AC II ont été selectionnés. De plus, l’étude de l’affinité des composés optiquement purs a permis de mettre en évidence une énantioselectivité isoforme dépendante. / Carbonic anhydrase (CA) IX expression is increased upon hypoxia and has been proposed as a therapeutic target since it has been associated with poor prognosis, tumor progression and pH regulation. A new class of human carbonic anhydrase IX (hCA IX) inhibitors, diarylpyrazole sulfonamide derivatives, has been synthesized in our team. These compounds have a very limited water solubility which limits their pharmaceutical development. The complexation with cyclodextrins (CDs) offers the possibility to improve their solubility without affecting their original structure and has proved to be one of the most effective. The studies of the complexes formed between our compounds and various CDs have been performed, in order to choose the most appropriate CD. We investigate by NMR and capillary electrophoresis the complexes formed between six original diarylpyrazole sulfonamide derivatives and six CDs (native &#61537;-, &#61538;- and &#61543;- CDs, hydroxypropylated HP-&#61538;-CD, methylated Me-&#61538;-CD or amino NH2-&#61538;-CD) at physiological pH. Futhermore, as these compounds have a chiral center, it was essential to separate their enantiomers and verify their optical purities before envisaging the study of their pharmacological activity. The enantiomeric purification was performed by three separative methods, the high performance liquid chromatography, the supercritical fluid chromatography and the capillary electrophoresis. This study permit to obtain optically pure compound in order to determine affinity of carbonic anhydrase. To determine the affinities of derivatives with isoforms, we performed first a comparison of three label-free methods for quantitative assessment of binding strength between carbonic anhydrase II and sulfonamides derivatives. The formation constants have been determined by surface plasmon resonance, isothermal titration calorimetry and thermal shift assay, which characterize the interaction between two partners. This study was useful to select and to validate the surface plasmon resonance (SPR) for the molecular interaction between carbonic anhydrases and all our derivatives. Affinities of sixteen compounds for three carbonic anhydrase isoforms (CA II, IX and XII) were then determined by SPR. These compounds have nanomolar affinities for three isoforms. Two compounds have affinities with great interest for the isoform CA IX, and a good selectivity CA IX versus CA II and should be considered as lead compounds. Additionally, some of optically pure compounds have shown an enantioselectivity for the AC isoforms

Downstream regulatory element antagonist modulator (DREAM) is involved in various interactions with targets both inside and outside of the nucleus. In the cytoplasm, DREAM interacts with the C-terminal fragments of presenilins to facilitate the production of β-amyloid plaques in Alzheimer’s disease. In the nucleus, Ca2+ free DREAM directly binds to specific downstream regulatory elements of prodynorphin/c-fos gene to repress the gene transcription in pain modulation. These interactions are regulated by Ca2+ and/or Mg2+ association at the EF-hands in DREAM. Therefore, understanding the conformational dynamics and stability associated with Ca2+ and/or Mg2+ binding to DREAM is crucial for elucidating the mechanisms of interactions of DREAM with DNA or presenilins. The critical barrier for envisioning the mechanisms of these interactions lies in the lack of NMR/crystal structures of Apo and Mg2+DREAM. Using a combination of fluorescence spectroscopy, circular dichroism, isothermal titration calorimetry, photothermal spectroscopy, and computational approaches, I showed that Mg2+ association at the EF-hand 2 structurally stabilizes the N-terminal alpha-helices 1, 2, and 5, facilitating the interaction with DNA. Binding of Ca2+ at the EF-hand 3 induces significant structural changes in DREAM, mediated by several hydrophobic residues in both the N- and C-domains. These findings illustrate the critical role of EF-hand 3 for Ca2+ signal transduction from the C- to N-terminus in DREAM. The Ca2+ association at the EF-hand 4 stabilizes the C-terminus by forming a cluster consisting of several hydrophobic residues in C-terminal domain. I also demonstrated that association of presenilin-1 carboxyl peptide with DREAM is Ca2+ dependent and the complex is stabilized by aromatic residues F462 and F465 from presenilin-1 and F252 from DREAM. Stabilization is also provided by residues R200 and R207 in the loop connecting a7 and a8 in DREAM and the residues D450 and D458 in presenilin-1. These findings provide a structural basis for the development of new drugs for chronic pain and Alzheimer’s disease treatments.

Les carbones poreux ont été largement utilisés et étudiés ces dernières années. Ce travail de recherche porte sur la préparation de matériaux carbonés mésoporeux modifiés ou non par de l'azote. Tout d'abord, un carbone mésoporeux pur a été synthétisé. Puis des atomes d'azote ont été introduits dans ce carbone mésoporeux par deux méthodes de dopage ("in situ" et "post-synthèse" respectivement). La comparaison des propriétés acido-basiques dans des conditions différentes pour les trois types de matériaux mésoporeux carbonés, avec ou sans diazote, a été faite grâce à des techniques calorimétriques. Ces carbones mésoporeux ont aussi été utilisés dans l'adsorption de polluants, le stockage de l'hydrogène et en tant que supports pour les métaux précieux et l'oxyde de fer en catalyse. Les différentes performances dans ces applications ont été mises en relation avec les différentes propriétés structurelles et surfaciques causées par le dopage au diazote / Porous carbon materials are widely used and studied in recent years. In this work, three kinds of mesoporous carbon materials were prepared. Firstly, cost-effective pure mesoporous carbon was synthesized. Then nitrogen atoms were introduced into the mesoporous carbon by “in situ” and “post” doping methods respectively. The comparisons of the acid-base properties in different conditions of the three kinds of mesoporous carbon materials with or without nitrogen were studied and revealed by different calorimetric techniques. The three kinds of mesoporous carbons were also applied in pollutants adsorption, hydrogen storage and as supports of precious metals and iron oxide in catalysis. The different performances in applications were related to the different structural and surface properties caused by the N-doping