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Untersuchung von akustischen Strömungen im kHz- und GHz-Bereich / Observation of acoustic streaming in the kHz- and GHz-rangeNowak, Till 23 January 2014 (has links)
Bei Einkopplung von Schall in ein Fluid können durch nichtlineare Effekte und Dämpfung Strömungen erzeugt werden. Diese Strömungen, die ihre Energie aus einem Impulsübertrag der Schallwelle auf die Flüssigkeit beziehen, werden akustische Strömungen genannt (engl.: acoustic streaming). Dieser Impulsübertrag hängt u.a von der Dämpfung der Schallwelle im Medium ab: bei stärkerer Dämpfung nimmt der Impulsübertrag zu und entsprechend die Geschwindigkeit der induzierten Strömung. Eine wichtige Rolle in der vorgelegten Arbeit spielt die Dämpfungserhöhung im Fall in der Flüssigkeit vorhandener Blasen. Dies ist insbesondere bei allen Prozessen von großer Bedeutung, in denen durch intensive (Ultra-)Schallfelder die Blasen in der Flüssigkeit selbst erzeugt werden (akustische Kavitation). Hier entstehen durch die mit den Blasen verbundene Dissipation sehr viel größere akustische Strömungsgeschwindigkeiten als im Fall ohne Kavitation. Zudem werden durch die Volumenoszillation und die Translation der Kavitationsblasen weitere Strömungen auf Skala der Blasengröße induziert.
Mit einem in der Arbeit neu entwickelten Versuchsaufbau lassen sich Strömungen auf größeren und mittleren Skalen bis zu einzelnen Blasen in akustischen Kavitationsblasenfeldern abbilden und untersuchen. Durch die Farbtrennung eines speziellen Fluoreszenzmikroskopes ist es möglich, die Flüssigkeitsströmungen und die Kavitationsblasen simultan und getrennt aufzunehmen.
Die Abhängigkeit der akustischen Strömungen von verschiedenen Einflussparametern wie Schallleistung, Temperatur und Gasgehalt der Flüssigkeit werden am Beispielfall einer bei 17 kHz betriebenen Ultraschall-Sonotrode (Schallhorn) in Wasser untersucht. Insbesondere der Übergang vom nicht kavitierenden zum kavitierenden Fall ist hier von Interesse, was durch die Möglichkeit eines statischen Überdrucks im Experiment gut beeinflusst werden kann. Es zeigt sich wie erwartet mit dem Einsetzen von Kavitation eine starke Zunahme der akustischen Strömungsgeschwindigkeiten, woraus auf den stark erhöhten Dämpfungskoeffizienten für Schallausbreitung geschlossen werden kann. Ebenfalls werden die sehr schnellen Mikroströmungen auf Blasenebene dokumentiert. Eine genauere Analyse ergibt auch das Auftreten von subharmonischem Verhalten bei Blasendynamik und Strömungsfeld.
An speziellen Ultraschallwandlern werden zudem die rein akustischen Strömungen (ohne Auftreten von Kavitation) bei extremen, bisher für Dickenschwinger nicht erreichbaren Schallfrequenzen bis zu 2 GHz in Wasser experimentell untersucht. Hierzu wird ebenfalls der Fluoreszenz-Aufbau verwendet, Es zeigen sich relativ hohe Strömungsgeschwindigkeiten in Form eines vom Wandler weggerichteten Jets, der sich auch weit jenseits der Eindringtiefe des Schalls in die Flüssigkeit erstreckt. Dieses Verhalten wird ebenfalls numerisch mit einer Finite-Elemente-Methode modelliert. Hier wird neben ausführlichen, aber sehr zeitaufwändigen Rechnungen auch erfolgreich eine vereinfachte Simulation der akustischen Strömungen in dem betrachteten Fall sehr hoher Frequenz angewandt.
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Étude du réseau d'interactions entre les protéines du Virus de l'Hépatite CRacine, Marie-Eve January 2007 (has links)
Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal.
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Vliv exprese vanZTei a vanZg na rezistenci ke glykopeptidovým antibiotikům u Staphylococcus aureus / The effect of vanZTei and vanZg expression on resistance to glycopeptide antibiotics in Staphylococcus aureusZieglerová, Leona January 2015 (has links)
A membrane protein VanZTei which is encoded by the gene vanZ from the vanA glycopeptide resistance gene cluster is a part of the large family of VanZ proteins. VanZTei confers resistance to teicoplanin in Enterococcus faecalis without the presence of other proteins encoded by the cluster. The aim of my work was to compare the ability of two orthologous proteins VanZTei and VanZg (from the genome of Enterococcus faecium) to confer resistance to glycopeptides in Staphylococcus aureus RN4220 and Enterococcus faecium. We have shown that VanZg increases resistance to teicoplanin (Tei) 8 to 16 times the and also to dalbavancin (Dalb) 8 times. VanZTei also confers resistance to Tei and Dalb, but the increase is only twofold. Conversely VanZTei confers resistance to newly synthetized glycopeptides more effectively than VanZg (fourfold increase of resistance confered by VanZTei and two to fourfold increase of resistance confered by VanZg). It suggests that both proteins have different specificity to antibiotics. In despite the mutants of S. aureus RN4220 VanZTei pRMC2 with increased resistance to teicoplanin (MICTei> 8 µg/ml) in which the resistance is dependent on vanZTei expression were selected. These resistant mutants do not carry mutation in a gene vanZTei or in its ribosomal binding site. Neither of the...
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Localização in situ e caracterização molecular da bactéria endossimbionte de Pleurotus ostreatus / In situ localization and molecular characterization of Pleurotus ostreatus endosymbiont bacteriaYara, Ricardo 30 June 2006 (has links)
O fungo Pleurotus ostreatus pertence ao grupo de basidiomicetos que degradam madeira. Este cogumelo cultivado em todo mundo apresenta grande rusticidade e produtividade, e pode ainda ser usado em processos de biorremediação e biopolpação. Devido a seu potencial biotecnológico, torna-se interessante a compreensão da interação deste com outros microrganismos. Neste sentido, recentemente foi observada a presença de bactérias associadas a P. ostreatus em culturas in vitro, que apresentavam grande pleomorfismo. A partir desta observação foram elaborados ensaios que visaram a confirmação da presença de bactérias. Para tanto, foi utilizada a estratégia do "Ciclo Completo de Análise do rRNA" (full-cycle rRNA analysis) empregada em microrganismos não cultiváveis ou de crescimento fastidioso, além do emprego de técnicas de microbiologia básica, e de estudos de ultraestrutura. Os estudos de microbiologia básica indicaram que se tratava de um microrganismo fastidioso e que se desenvolvia melhor na presença do fungo em sistema de co-cultivo em meios contendo Tween 80 ou Tween 20. Por sua vez, a análise de ultraestrutura demonstrou a presença de estruturas pleomórficas, tanto internamente como externamente à hifa. Em relação ao "Ciclo completo de Análise do rRNA" este se iniciou pela amplificação e seqüenciamento de parte do rDNA bacteriano, que revelou a proximidade desta bactéria com o Complexo Burkholderia cepacia (CBC). A partir desta seqüência, foi realizado um estudo de bioinformática que indicou sondas específicas para este grupo de bactérias. Completando o Ciclo completo de Análise do rRNA, foram realizados ensaios de hibridização in situ fluorescente (FISH) para a confirmar a relação entre as estruturas bacterianas e a seqüência obtida. Este método comprovou a presença das bactérias no interior das hifas de P. ostreatus. Este trabalho constitui o primeiro relato de bactérias pleomórficas pertencente ao complexo B. cepacia associados a P. ostreatus. / The fungus Pleurotus ostreatus, which belongs to white rot basidiomycete group, is a widely cultivated mushroom; this species has high productivity and rusticity, besides its use in biobleaching and bioremediation processes. This biotechnological potential justifies microbial interaction studies between this fungi and others microorganisms. In P. ostreatus mycelia, it has been observed pleomorphic bacteria growing on agar media. This research describes several assays to confirm bacterial presence in this sample. Therefore, the full-cycle rRNA analysis (described for unculturable or fastidious microorganism), ultrastructure and basic microbiology approaches were employed. Basic microbiology approaches indicated slow growing bacteria, which grown faster near to fungi colonies in solid media amended with Tween 80 or Tween 20 (co-culture system). Ultrastructure studies confirm the presence of intracellular and extracellular pleomorphic bacteria. The full-cycle rRNA analysis started with 16S rDNA amplification and sequencing. This approach demonstrated a relation between these bacteria with Burkholderia cepacia complex. By bioinformatics analysis was determinate which DNA probes can be use to identified this bacterial group. The last step for full-cycle rRNA analysis was applying fluorescent in situ hybridization (FISH). This technique confirmed the relationship between 16S rDNA bacterial sequence and bacterial forms. This is the first time that a pleomorphic bacteria from B. cepacia complex is found associated with P. ostreatus.
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Avaliação in vitro da viabilidade de Enterococcus faecalis e Candida albicans nos túbulos dentinários após a aplicação de hidróxido de cálcio e clorexidina gel 2% / In vitro evauluation of the viability of Enterococcus faecalis and Candida albicans in dentinal tubules after placement of calcium hydroxide and chlorhexidine gel 2%Delgado, Ronan Jacques Rezende 12 June 2007 (has links)
Uma infecção pulpar pode resultar na colonização microbiana de todo sistema de canais radiculares incluindo os túbulos dentinários. Estes microorganismos e seus produtos tóxicos são responsáveis pelo desenvolvimento e persistência da periodontite apical de origem endodôntica. O presente estudo objetivou avaliar a viabilidade de E. faecalis e C. albicans em túbulos dentinários após a aplicação de hidróxido de cálcio, clorexidina gel 2%, hidróxido de cálcio associado à clorexidina gel 2% e soro fisiológico, através da análise por cultura microbiológica e microscopia de fluorescência. Para tanto 120 raízes de dentes humanos foram padronizadas e autoclavadas, sendo posteriormente divididas em 2 grupos (n= 60) para contaminação com E. faecalis e C. albicans por 21 dias. Em seguida, foram divididas em 8 grupos (n= 15) para aplicação das substâncias antimicrobianas nos canais radiculares e posterior incubação em estufa por 14 dias. Amostras da dentina radicular na extensão de 0 - 100 µm e de 100 - 200 µm foram coletadas e submetidas à cultura microbiológica através do plaqueamento em meios de cultura. Após 48 horas de incubação promoveu-se a avaliação das UFC. Paralelamente, as amostras foram processadas para análise em microscopia de fluorescência com auxílio de marcadores fluorescentes específicos, a fim de se determinar a proporção de microorganismos viáveis e não viáveis. Outros 6 espécimes foram preparados para análise em MEV. Os resultados mostraram uma maior capacidade de penetração intratubular para E. faecalis quando comparado a C. albicans. A aplicação de medicação intracanal resultou em significativa redução da viabilidade dos microorganismos quando comparado ao grupo controle independente da medicação aplicada e em ambas as porções da dentina radicular avaliadas. Entretanto, ao compararmos individualmente as medicações, observamos o melhor desempenho da clorexidina gel 2 % e da associação de hidróxido de cálcio e clorexidina gel 2% sem diferença significante entre elas. O hidróxido de cálcio apresentou os piores resultados para desinfecção dos canais radiculares contaminados com E. faecalis e C. albicans. Estes achados foram confirmados tanto pela cultura microbiológica quanto pela microscopia de fluorescência. A cultura microbiológica e a microscopia de fluorescência são métodos adequados e complementares para avaliação da viabilidade de E. faecalis e C. albicans e a eficácia da clorexidina gel 2% e da associação hidróxido de cálcio e clorexidina gel 2% justificam seu uso em endodontia como medicação intracanal. / A pulp infection can result in a microbial colonization of the entire root canals system, including dentinal tubules. These microorganisms and their toxic product are responsible for the development and persistence of apical periondontitis from endodontic source. The present study aimed to evaluate E. faecalis and C. albicans viability in dentinal tubules after the application of calcium hydroxide, chlorhexidine gel 2%, calcium hydroxide associated to chlorhexidine gel 2% and physiological solution, through the analysis by microbiological culture and fluorescence microscopy. For that, 120 human teeth root were standardized and submitted to autoclave, and after ere divided into 2 groups (n=60) for E. faecalis and C. albicans contamination for 21 days. Following this, they were divided into 8 groups (n=15) for application of antimicrobial substances in the root canals and subsequent incubation for 14 days. Samples from root dentin with 0 - 100 µm and 100 - 200 µm of extension were collected and submitted to microbiological culture.After 48 hours of incubation, it was performed the evaluation of colony-forming units (CFU). At the same time, the samples were processed for fluorescence microscopic analysis with the assistance of specific fluorescent markers, in order to determine the proportion of viable and non-viable microorganisms. Other 6 specimens were prepared for the analysis of scanning electron microscopy. Results demonstrated a higher capacity of penetration in the tubules for E. faecalis than for C. albicans. The application of intracanal medication resulted in significant reduction of microorganisms viability when compared to the control groups independently of the medication used and in both evaluated portions of root dentin. However, when one compares individually the medications, it was observed a better performance of chlorhexidine gel 2% and the association of calcium hydroxide with chlorhexidine gel 2% without a significant difference between them. Calcium hydroxide had the worst results for disinfection of root canal contaminated with E. faecalis and C. albicans. These findings were confirmed for the microbiological culture as well as for the fluorescence microscopy. The microbiological culture and the fluorescence microscopy are adequate methods and complementary for the evaluation of E. faecalis and C. albicans viability and the efficacy of chlorhexidine gel 2% and the association of calcium hydroxide with chlorhexidine gel 2% warrant their use in Endodontics as an intracanal medication.
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Estudo, via simulação molecular, da interação de dois peptídeos da região 115-129 da miotoxina II do veneno da serpente Bothrops asper com membranas celulares. / Estudo, via simulação molecular, da interaão de dois peptídeos da região 115-129 da miotoxina II do veneno da serpente Bothrops asper com membranas celularesLourenzoni, Marcos Roberto 13 June 2005 (has links)
As ligações de hidrogênio (LH), fundamentais na determinação da estrutura da água, proteínas, etc., são muito importantes no reconhecimento molecular e nos mecanismos de reações enzimáticas. A determinação da energia das LHs intramoleculares em proteínas e intermoleculares entre uma proteína e o solvente água, porque fornece informações sobre a estrutura secundária, terciária e quaternária das proteínas. Um método para quantificar e qualificar as LHs foi desenvolvido utilizando critérios de distância, geométricos e energéticos a partir das trajetórias obtidas por simulações de dinâmica molecular. O método foi testado com o monômero de uma fosfolipase A2 homodimérica, sem atividade catalítica, isolada do veneno da Bothrops asper(BaspMT-II). No dímero, a análise das LHs mostrou que elas são também essenciais na manutenção da estrutura quaternária. Essa análise permitiu identificar movimentos do tipo dobradiça acompanhados da formação transitória, na interface dimérica, de LHs controladas pelo triptofano na posição 77. Esses movimentos podem estar associados à ação danosa às membranas, uma vez que podem promover a inserção da região C-terminal na membrana. Estudos prévios mostraram que o peptídeo sintético (3Y codificado pelos aminoácidos 115-129 da BaspMT-II) apresenta atividade bactericida e citolítica. Um outro peptídeo (3W), mutante de 3Y, no qual três resíduos tirosina são substituidos por triptofano, apresenta um aumento do dano às membranas e do efeito miotóxico. Os mecanismos de ação desses peptídeos e as suas estruturas foram estudados por dinâmica molecular, dicroísmo circular (DC), microscopia de fluorescência e monocamadas de Langmuir (Mlang). As adsorções dos peptídeos em monocamadas de ácido dimiristoil fosfatídico (DMPA) e dimiristoilfosfatidilcolina (DMPC) se processam por mecanismos diferentes ocasionados pelas diferentes naturezas físico-químicas dos resíduos tirosina e triptofano. A microscopia de fluorescência acoplada a Mlang de DMPA com 3W adsorvido mostra um aumento da fluidez da monocamada, enquanto que o 3Y modifica os domínios do DMPA para pequenas estruturas circulares. Foram realizadas simulações dos peptídeos 3Y e 3W em meio aquoso e nas regiões interfaciais água/n-hexano e água/bicamadas de DMPC. Os resultados confirmam os obtidos por Mlang, demonstrando que os peptídeos interagem diferentemente com as membranas por adotar conformações alternativas definidas previamente. Essas conformações, diferentes das observadas em meio aquoso, dependem da natureza da interface. As estruturas encontradas no final das simulaçoes corroboram o mecanismo proposto por Mlang, assim como as estruturas sugeridas por DC. Isso sugere que a atividade biológica reduzida do peptídeo 3Y ocorre porque os seus dois resíduos Leu se adsorvem na interface sem penetrá-la. Ao contrário de 3W, os resíduos carregados do peptídeo 3Y não estão localizados corretamente para promover uma interação suficientemente atrativa para permitir a sua inserção na membrana celular. / Hydrogen bonds (HB) are highly important in the determination of the structure of the water and proteins. They also play a important role in molecular recognition and in enzyme reaction mechanisms. The determination of protein/water intermolecular and protein intramolecular HB energies provide information with respect to the formation and stabilization of secondary, tertiary and quaternary protein structure. A method that quantifies and qualifies the properties of HB was developed using distance, geometric and energy criteria as applied to data obtained from the atomic trajectories generated by molecular dynamics simulations. The method was tested with a monomer of a catalytically inactive homodimeric phospholipase A2 from Bothrops asper(BaspMT-II) venom. HBs at dimmer interface are essential for maintaining the quaternary structure, and are highly conserved during hinge-like movements of the dimmer. HB formed by tryptophan residue at position 77 controls this movement. These motions can be associated to the membrane damaging action since they facilitate the insertion of the C-terminus into the cellular membrane. Previous studies have shown that synthetic peptide (3Y, coding the amino acids 115-129 of BaspMT-II ) presents bactericidal and cytolitic activities. A peptide variant ( 3W ), in which tyrosine residues were substituted by tryptophan residues, presents an enhanced membrane damaging activity increased miotoxic effect. The mechanism of action of the peptides and their structures were studied by molecular dynamics simulations, circular dichroism (CD), fluorescence microscopy and Langmuir monolayers (Mlang). The adsorption of the peptides on a monolayer composed of dimiristoyl phosphatidic acid (DMPA) and dimiristoylphosphatidyl choline (DMPC) occurs through different processes due to the differences in the physic-chemical nature of the tyrosine and tryptophan residues. Fluorescence microscopy together with Mlang of DMPA with adsorbed 3W indicates an increase of the membrane fluidity while small circular domains are formed with DMPA. Simulations were conducted with the 3Y and 3W peptides in aqueous media, is a water/n-hexane and water/DMPC bilayers. The results confirm the Mlang results, showing that the peptides interact differently with the membranes by adopting alternative previously defined conformations. These two conformations, both of which are different to those observed in water, are dependent of the nature of the interfaces. The final simulated configurations confirm the mechanism proposed by Mlang and the structures proposed by CD. It is suggest that the reduced biological activity of the 3Y peptide is due to the two Leu residues that only adsorb to the cellular membrane without penetrating the bilayer. In contrast to the 3W peptide, no charged residue is correctly located to promote the interaction and insertion of the 3Y peptide into the membrane.
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Influenza matrix protein M1Jungnick, Nadine 21 December 2011 (has links)
Die Aufklärung der Prozesse, die zur Zusammensetzung des Influenza A Virus führen, ist Bestandteil für die Bekämpfung dieser Infektionskrankheit. Der Viruspartikel setzt sich aus einer Hülle, der darunter liegenden Matrix und dem Genom zusammen. Das Genom ist als Bündel aus acht Ribunucleoproteinkomplexen organisiert. Die Hülle besteht aus einer Membran, die mit Sphingomyelin und Cholesterol angereichert ist und den darin eingebetteten Membranproteinen Hämagglutinin, Neuraminidase und dem Protonenkanal M2. Die unter der Hülle liegende Matrix wird von einem einzigen Influenzaprotein formiert: Dem Matrixprotein M1. Es spielt eine Schlüsselrolle im Replikationszyklus des Virus in der Zelle. Es interagiert mit dem genetischen Material, mit den Membranproteinen und der Lipidmembran der Hülle. Die vorliegende Arbeit gibt Auskunft, welche Lipide eine Rolle in der M1-MembranWechselwirkung spielen. Die Liste der identifizierten Lipide umfasst neben dem bereits bekannten Phosphatidylserin auch Phosphatidylglycerol und Phosphatidsäure. Verschiedene Phosphatidylinositole konnten ebenfalls identifiziert werden. Als stärkster M1 Bindungspartner trat dabei Phosphatidylinositol-4-Phosphat zutage. Weitere auf Mutanten basierende Untersuchungen zeigten, dass der membranbindende Bereich nicht auf eine einzelne Domäne in M1 festgelegt werden kann. Die N-terminale M1-Domäne mit ihrem Oberflächen-exponierten, positiv geladenen Areal und die C-terminale Domäne interagierten mit Modellmembranen. Das Resultat dieser Interaktionen konnte mittels mikroskopischer Untersuchungen an gigantischen unilamellaren Vesikeln dokumentiert werden. Für M1 und für eine Mutante, die nur aus der N-terminalen M1-Domäne besteht, konnte eine von anderen viralen Proteinen unabhängige homooligomere Organisation auf der Membran gezeigt werden. Diese M1-Cluster könnten während der Zusammensetzung des Viruspartikels als Fundament für die Eingliederung aller weiteren viralen Komponenten dienen. / about the assembly process of the influenza A virus particle is essential for the development of effective approaches for prevention and treatment of this virus infection. The virus particle consists of an envelope, an underlying matrix, and the encapsulated genome. The genetic material is organized as bundle of eight ribonucleoprotein complexes that encode for eleven proteins. The envelope consists of a lipid bilayer that is enriched in sphingomyelin and cholesterol. The viral spike proteins, hemagglutinin and neuraminidase, as well as the proton channel M2 are embedded into this membrane. The matrix can be found below the envelope. It is formed by one single protein, the matrix protein M1. M1 plays a crucial role during the replication of the virus in the cell. It interacts with the genetic material, with the envelope proteins and with the lipid bilayer of the envelope. The results of this study reveal in detail which lipids are targeted by M1. The set of identified lipids contains phosphatylglycerol and phosphatidic acids as new binding partners, beside the known phophatidylserine. Additionally, several phosphatidylinositols were identified. Phosphatidylinositol-4-phosphate was the strongest binding partner from this group. Mutant-based analysis revealed that M1 owns more than one membrane binding site. The positively charged area in the N-terminal and the C-terminal domain mediated membrane association of the respective mutant protein. The final constitution of M1 on the membrane was characterized by confocal fluorescence microscopy on giant unilamellar vesicles. Full length M1 and a mutant that consisted only of the N-terminal part of M1 showed lateral clustering of homooligomers on the vesicle surface. The clusters formed independently of any other viral component. A function as fundament for the incorporation of the other viral components can be assumed for these clusters.
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Recherche des assemblages moléculaires actifs en biolubrification en vue du diagnostic et de la thérapeutique précoce de pathologies articulaires / Research of active molecular assemblies in biolubrication in view of diagnosis and early treatment of joint diseasesMatei, Constantin Ionut 19 December 2012 (has links)
Les maladies ostéoarticulaires représentent environ 10% de l’ensemble des pathologiessurvenant en France chaque année. Les difficultés pour identifier les causes de ces maladiesproviennent pour une part d’un manque de compréhension du mécanisme de lubrificationd’une articulation synoviale saine. Dans ce contexte, un premier objectif de ce travail a été d’analyser la structurediscontinue du liquide synovial à partir de prélèvements animaux sains et de la reproduire àpartir de composants biomoléculaires commerciaux afin de comprendre le mécanisme delubrification dans le cas sain. Le deuxième objectif de cette thèse a été d’analyser l’évolution de la structure et despropriétés lubrifiantes du liquide synovial dans le stade précoce de pathologies noninflammatoiresou inflammatoires à partir de prélèvements pathologiques humains. Afind’étudier plus finement l’évolution de la lubrification pathologique cette thèse a visé àdévelopper aussi des modèles de lubrifiants obtenus à partir de cultures cellulaires desynoviocytes humains en combinant l’action de facteurs inflammatoire (cytokines).L’ensemble des résultats montre l’importance de la structure supramoléculaire duliquide synovial dans l’obtention de bonnes propriétés lubrifiantes ; cette relation devraitconstituer d’une part un paramètre clé dans le diagnostic précoce des pathologies articulaireset d’autre part une voie de développement de liquides thérapeutiques à base de lubrifiantsnanostructurés / Osteoarticular diseases account for approximately 10% of all diseases occurring inFrance each year. The difficulties in identifying their causes are also due to a deficiency inunderstanding the lubrication mechanism of healthy synovial joint.In this context, the first objective of the present study was to analyze the discontinuousstructure of synovial fluid samples from healthy animals and to reproduce it using commercialbiomolecular components in order to understand the lubrication mechanism in the healthycase. The second objective of this thesis was to analyze the evolution of the structure andthe lubricating properties of synovial fluid in the early stage of non-inflammatory andinflammatory diseases using pathological human fluid samples. In order to study moreprecisely the evolution of pathological lubrication this work aimed to develop lubricantmodels obtained from cell cultures of human synoviocytes adding the action of pathologicalinflammatory factors (cytokines). All together the results show the importance of the supramolecular structure of thesynovial fluid in obtaining good lubricating properties what may be a key parameter in theearly diagnosis of joint diseases and even more a chance to develop therapeutic fluids basedon nanostructured lubricants
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Efeito da glicose sobre os mecanismos de extrusão de prótons em células MDCK. / Effect of glucose on mechanisms of proton extrusion in MDCK cells.Damasceno, Rosélia dos Santos 14 June 2010 (has links)
Este estudo investigou o efeito da glicose sobre a atividade e expressão da isoforma 1 do trocador Na+/H+ (NHE1) e da H+-ATPase do tipo vacuolar, em células MDCK (Mardin Darby Canine Kidney), linhagem derivada de rim de cão, que apresenta características similares às células principais e intercalares das porções distais do néfron. Por microscopia de fluorescência, se avaliou a velocidade de recuperação do pHi (dpHi/dt) e a capacidade tamponante (<font face=\"symbol\">bi). A partir desses parâmetros, se calculou o efluxo de H+ (JH+). Por Western blot, se avaliou a expressão de NHE1 e da subunidade E da H+-ATPase do tipo vacuolar. Resultados: Na condição controle o efluxo de H+ foi de 6.27 ± 0.51 mM/min (n = 9). O tratamento agudo com glicose (25 mM) aumentou o efluxo de H+ via NHE1, o qual foi modulado pela PI3 cinase. Na mesma condição, não se observou alterações na atividade da H+-ATPase. O tratamento crônico com glicose (25 mM) induziu significante aumento do efluxo de H+, via NHE1 e H+-ATPase. O efeito estimulador da glicose sobre a atividade de NHE1 e H+-ATPase foi dependente da atividade da p38 MAP cinase. Além disso, o tratamento crônico com glicose (25 mM) induziu fosforilação do sistema ezrin/radixin/moesin (ERM) e Akt. Conclusões: Nossos resultados indicam que no tratamento agudo com glicose (25 mM), o NHE1 foi modulado pela PI3 cinase. Contudo, no tratamento crônico com glicose (25 mM), a atividade do NHE1 foi modulada pelo sistema ERM/Akt e a atividade da H+-ATPase foi modulada pela p38 MAP cinase. / This study investigated the effect of glucose on the activity and expression of Na+/H+ exchanger isoform 1 (NHE1) and vacuolar H+-ATPase, in Mardin Darby Canine Kidney (MDCK) cells from dog kidney, with similar characteristics to principal and intercalated cells of the distal nephron. The pHi recovery rate (dpHi/dt) and the buffering capacity (<font face=\"symbol\">bi) was evaluated through fluorescence microscopy. From these parameters the H+ efflux (JH+) was calculated. By Western blot, the NHE1 and H+-ATPase (E subunit) expression was evaluated. Results: In the control situation the H+ efflux was 6.27 ± 0.51 mM/pH units (n = 9). Acute treatment with glucose (25 mM) increased the H+ efflux via NHE1, which was modulated by PI3 kinase. In the same condition, the H+-ATPase activity did not change. Chronic treatment with glucose (25 mM) induced significant increase in H+ efflux via NHE1 and H+-ATPase. The stimulatory effect of glucose on the NHE1 and H+-ATPase activity was dependent on p38 MAP kinase activity. Furthermore, chronic treatment with glucose (25 mM) induced Ezrin/radixin/moesin (ERM) and Akt phosphorylation. Conclusions: Our results indicate that during the acute treatment with glucose (25 mM), the NHE1 is modulated by PI3 kinase. However, during chronic treatment with glucose (25 mM), NHE1 activity was modulated by the ERM/Akt system and of H+-ATPase activity was modulated by p38 MAP Kinase.
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Imagerie de fluorescence à haute résolution : étude de la localisation nucléolaire de la protéine de la nucléocapside du VIH / Nucleolar distribution of the HIV-1 nucleocapsid protein investigated by the super-resolution microscopyGlushonkov, Oleksandr 06 April 2018 (has links)
Au cours de ce travail de thèse expérimental, nous nous sommes intéressés à l’étude de la localisation nucléaire et nucléolaire de la protéine de la nucléocapside (NC) du VIH-1. Des études antérieures menées au laboratoire avaient mis en évidence une très forte accumulation de la NC dans les nucléoles. Ce compartiment nucléaire est connu pour être ciblé par de nombreux virus afin de promouvoir leur réplication. Des expériences de microscopie électronique avaient révélé la structure complexe du nucléole et montré qu’il est composé de trois sous-compartiments : les centres fibrillaires, le compartiment fibrillaire dense et le compartiment granulaire dans lesquels se déroule la synthèse des ribosomes. Afin de caractériser la localisation de la NC dans ces trois sous-compartiments, nous avons développé une approche de microscopie optique à haute résolution permettant d’obtenir des images à deux couleurs avec une résolution spatiale améliorée. Pour cela, nous avons mis au point un protocole qui permet d’utiliser simultanément une protéine fluorescente photocommutable et un fluorophore organique introduit par immunomarquage. Après avoir minimisé les aberrations optiques et corrigé les dérives mécaniques inhérentes au montage, nous avons visualisé simultanément la localisation de la NC surexprimée dans des cellules HeLa avec des marqueurs spécifiques des trois sous-compartiments nucléolaires (immunomarquage). La microscopie de fluorescence à haute résolution a permis de résoudre pour la première fois les différents compartiments et de montrer que la NC se localise préférentiellement dans le compartiment granulaire. Finalement, des expériences préliminaires avec des cellules vivantes ont permis de mettre en évidence que la NC est transportée de manière active dans le noyau et qu’elle pourrait interagir directement avec des protéines nucléolaires / During this experimental thesis work, we investigated the nuclear and nucleolar localization of the nucleocapsid protein (NC) of HIV-1. Previous studies performed in our laboratory evidenced a strong accumulation of NC in a subnuclear structure called nucleolus. Playing role in multiple cellular processes, nucleolus is often targeted by viruses to promote their replication. Electron microscopy revealed three nucleolar components (fibrillar centers, dense fibrillar component and granular component) associated to specific steps of the ribosome biogenesis. To characterize the distribution of the NC in these three sub-compartments and therefore shed light on the nucleolar localization of NC during the replication cycle, we developed a high-resolution optical microscopy approach. After having minimized the optical aberrations and corrected the mechanical drifts inherent to the imaging setup, the NC-mEos2 fusion protein overexpressed in HeLa cells was visualized simultaneously with immunolabeled nucleolar markers. The use of high-resolution fluorescence microscopy enabled us to resolve for the first time the three nucleolar compartments and to demonstrate the preferential localization of NC in the granular compartment of nucleolus. Finally, preliminary experiments performed with living cells showed that NC is actively transported in the nucleus and therefore may interact directly with nucleolar proteins.
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