In the present study, we have approached the molecular characterization of the HCMV specific UL1. To this end a HCMV (AD169-derived HB5 background) recombinant with an HA-epitope tagged UL1 and a mutant with a full UL1 deletion in the endotheliotropic HCMV TB40/E strain were generated. Our data reveal that the UL1 is transcribed with late kinetics. pUL1 is glycosylated and localizes at the site of virus assembly and secondary envelopment in infected cells forming part of the envelope of HCMV virions. A HCMV mutant with a targeted deletion of UL1 exhibits a growth defect phenotype in retinal pigment epithelium cells but not in fibroblasts, indicating that this ORF encodes a cell-type specific tropism factor. / En aquest treball hem investigat la pauta oberta de lectura de UL1 del Cytomegalovirus humà (HCMV), el gen UL1 es específic del HCMV. Hem caracteritzat la proteïna UL1 modificada amb un epítop HA en la soca HB5, derivada de AD169. L'UL1 s’expressa com una glicoproteïna que es pot detectar a les 48 i 72h post-infecció. En fibroblasts humans infectats, UL1 co-localitza al citoplasma, al lloc d’assemblatge del virió, amb proteïnes estructurals del virus. A més a més, els anàlisis de virions AD169 purificats que contenen UL1-HA mostren que UL1 és un nou constituent de l’envolta del HCMV. La delecció de UL1 en el context de la soca TB40/E del HCMV disminueix el creixement viral de manera selectiva en determinats tipus cel•lulars, suggerint que UL1 podria estar involucrat en la regulació del tropisme cel•lular del HCMV.

Thesis (Ph.D.). / Written for the Institute of Parasitology. Title from title page of PDF (viewed 2008/02/12). Includes bibliographical references.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Bovine herpesvirus types 1 and 5 (BoHV-1, BoHV-5) are genetically and antigenic related viruses and have been associated with important economic losses to the cattle industry. The aim of this Thesis was to perform the molecular identification of BoHV-1 and BoHV-5 isolates. The first part describes the identification of 40 herpesviruses isolated from different clinical specimens and syndromes in central-southern Brazil, Argentina and Uruguay (1987 2006). The differentiation between BoHV-1 and BoHV-5 was performed by examining the size of the amplification product of a glycoprotein C gene-based PCR, designed for a low homology region of the gene. BoHV-1 isolates (n=16) were identified in cases of respiratory disease (n=3), vulvovaginitis and/or balanoposthitis (n=3), in semen of healthy bulls (n=5) and in cases of neurological disease (n=5). Samples identified as BoHV-5 (n=24) were isolated predominantly from cases of neurological disease (n=21), but also from semen of healthy bulls (n=2) and from a spleen of a calf with systemic disease (n=1). These results show that both BoHV-1 and BoHV-5 are not strictly associated with their respective diseases; yet are frequently involved in clinical conditions otherwise attributed to the other virus type. These findings also reinforce the need of correctly identifying the herpesvirus isolates as to better understand their pathogenesis and epidemiology. In the second part, it is reported the characterization of five Brazilian BoHV-1 isolates associated with neurological disease, an unusual finding. All five samples were isolated from the brain of cattle presenting neurological disease, yet histological evidences of meningoencephalitis were not observed in three cases. The isolated viruses were identified as BoHV-1 by a glycoprotein C gene-based PCR able to differentiate BoHV-1 from BoHV-5. The identity of the isolates was confirmed by nucleotide sequencing of the amplicons and by restriction analysis of PCR products from another gC region. Monoclonal antibody binding and cross-neutralization assays with BoHV-1 and BoHV-5 antisera showed a typical BoHV-1 antigenic profile. Inoculation of rabbits with these five BoHV-1 isolates did not result in neurological disease, contrasting with fatal meningoencephalitis produced by BoHV-5. Thus, the involvement of BoHV-1 in neurological disease of cattle is more frequent than previously reported, indicating the need for fast and precise means of differentiating it from BoHV-5. Likewise, the potential role of BoHV-1 in neurological disease in cattle should be further investigated. / Os herpesvírus bovino tipos 1 e 5 (BoHV-1, BoHV-5) são agentes geneticamente e antigenicamente relacionados que causam grandes prejuízos econômicos à bovinocultura. O objetivo desta tese foi o de realizar a identificação e diferenciação molecular de isolados de BoHV-1 e BoHV-5. Na primeira parte, foi relatada a identificação de 40 amostras de BoHV isoladas de diferentes casos clínicos na região Centro-Sul do Brasil, Argentina e Uruguai entre 1987 e 2006. A diferenciação entre BoHV-1 e BoHV-5 foi realizada pelo uso de um PCR para uma região de baixa homologia do gene da glicoproteína C, o que permitiu a diferenciação entre os tipos virais pelo tamanho do amplicon. As amostras identificadas como BoHV-1 (n=16) foram isoladas de doença respiratória (n=3), balanopostite e/ou vulvovaginite (n=3), do sêmen de touros saudáveis (n=5) e de casos doença neurológica (n=5). As amostras identificadas como BoHV-5 (n=24) foram, em sua maioria, isoladas de doença neurológica (n=21), mas também do sêmen de touros saudáveis (n=2) e do baço de um bezerro com doença sistêmica (n=1). Esses resultados demonstram que tanto o BoHV-1 como o BoHV-5 não estão estritamente associados às suas respectivas síndromes clínicas e que podem estar envolvidos em casos clínicos classicamente atribuídos ao outro tipo viral. Esses achados também reforçam a necessidade da correta identificação dos isolados de herpesvírus para um melhor conhecimento da sua patogenia e epidemiologia. Na segunda parte do trabalho, foram caracterizados cinco isolados de BoHV-1 provenientes de casos de doença neurológica. Esses vírus foram isolados do encéfalo de bovinos que apresentavam sinais neurológicos. Entretanto, evidências histológicas de meningoencefalite não foram observadas em três dos cinco casos. Os isolados foram identificados como BoHV-1 pela utilização de um PCR direcionado para o gene da gC. A identidade dos isolados foi confirmada pelo sequenciamento do amplicon e também por um segundo PCR para outra região do gene da gC, seguido de análise de restrição enzimática do amplicon. A caracterização antigênica com anticorpos monoclonais e testes de soroneutralização cruzada demostraram um perfil típico de BoHV-1. Esses cinco isolados também foram inoculados em coelhos, nos quais não produziram doença neurológica. Esses resultados demostram que o envolvimento de BoHV-1 em doença neurológica em bovinos é mais frequente do que o relatado anteriormente, evidenciando a necessidade de uma precisa diferenciação entre os tipos virais.

GPCRs, influencing myriads of cellular functions, are the members of the largest family of the membrane proteins. However, their structures and the signaling mechanisms still remain enigmatic. In case of the Glycoprotein Hormone Receptor (GpHR) family the structure-function relationship is less understood because of a large extra-cellular domain (ECD). This large ECD, consisting of Leucine Rich Repeats (LRRs) and membrane-proximal hinge region, is sufficient for specific binding to the hormone (Ascoli, Fanelli, & Segaloff, 2002), but for receptor activation, hormone binding is translated via a conformation wave starting at hinge region and relayed to the transmembrane domain. Several biochemical, immunological and molecular biological tools have been employed to elucidate the structure-function relationship of the hormones and their receptors. These studies also helped in deciphering some of the regions present in both the hormones and the receptors involved in maintaining the specificity of their interaction (Fan & Hendrickson, 2005; Fox, Dias, & Van Roey, 2001; Wu, Lustbader, Liu, Canfield, & Hendrickson, 1994). However, the complete understanding of the hormone‐receptor contact sites and mechanism of receptor activation are still an enigma. Understanding the molecular details of these phenomena can lead to the development of novel strategies of regulating hormone action or regulating receptor activation in a hormone independent manner. The crystal structure of FSHR ECD (amino acids 17-366) revealed that LRRs form a semicircular palm shaped structure with the C terminus region, designated as the hinge region, protruding out like a thumb. The hinge region, rather than being a separate functional unit, was found to be an integral part of the LRR domain, having two such repeats (LRR11 &12). LRR 11 is connected to LRR12 through a hairpin loop (amino acids 280-344) harboring the invariant sulfated tyrosine residue (sTyr) in YD/EY motif (X. Jiang et al., 2012). The heterodimeric hormones consisting of a common  subunit and a hormone specific  subunit, bind to the primary hormone binding site at LRR 4-6 as reported in the FSHR-FSH co crystal (Fan & Hendrickson, 2005). This primary binding of the hormone at LRR 4-6 creates a pocket (comprising of the residues P16α, L17α, F18α, F74α, L37β, Y39β, and P45β) in the hormone for secondary binding at sTyr residue. This interaction is proposed to initiate conformation change in the hinge region which further leads to FSHR activation (X. Jiang et al., 2012). Thus, the role of hinge region in GpHR activation got evolved from a linker to a switch, which decides the fate of the receptor activity (Agrawal & Dighe, 2009; Majumdar & Dighe, 2012). sTyr residue being conserved, presents itself as a potential player in activation mechanism of all the three receptors of the family (Bonomi, Busnelli, Persani, Vassart, & Costagliola, 2006; Kreuchwig, Kleinau, & Krause, 2013). Precise involvement of sTyr in GpHR activation is yet to be explored. The previous studies from the laboratory using the hinge region specific polyclonal and monoclonal antibodies established the unequivocal role of the hinge region in FSHR and TSHR activation (Agrawal & Dighe, 2009; Majumdar & Dighe, 2012). However, its function in LHR activation has not been conclusively established. Due to the unavailability of the structural information of LHR ECD/hinge, it is more difficult to study and explain the role of hinge region in LHR activation. The hormone independent signaling by point mutants of LHR also remains poorly understood. In the present study an attempt has been made to understand the role of the hinge region in LHR signaling and modulating role of LRRs in hinge mediated LHR activation. The present study was initiated with an overall objective of understanding the molecular details of LHR activation mechanism keeping hinge at the centre of the picture. To have clarity of this picture with a holistic view of the mechanism, multi-pronged approach was adopted. Initially, ScFvs against LHR hinge region were employed as tools to probe into the hormone‐receptor interactions. Antibodies against glycoprotein hormones and their receptors have often provided insights into the mechanism of hormone‐receptor interactions and signal transduction (Agrawal & Dighe, 2009; Dighe & Moudgal, 1983; Gadkari, Sandhya, Sowdhamini, & Dighe, 2007; Gadkari et al., 2007; Kene, Nalavadi, Dighe, Iyer, & Mahale, 2004; Majumdar, Railkar, & Dighe, 2012a, 2012b). In this study, Single chain Fragment variables (ScFvs) against the hinge region of LH receptor have been employed to understand the mechanism of receptor activation. The effects of LHR ScFvs on hCG-LHR interactions have been investigated and three of the ScFvs, JE10, JE4 and JG1 could bypass the hormone and activate the receptor directly, with JE10 being the most potent one. The effect on the signaling was specific for LHR as no increase in cAMP response was observed for TSHR/FSHR in presence of these ScFvs. JE10 surprisingly was unique and could alter the hCG-LHR interaction by decreasing hormone affinity and simultaneously increasing the Bmax for the hormone. JE10 binding was decreased to the pre-formed hormone receptor complex suggesting that hCG and the stimulatory antibody show stearic hindrance at the binding sites on hinge or hormone binding induces conformational change in the epitope of JE10. The change in affinity and Bmax of the hormone by JE10 could be due to unmasking of new binding sites for hormones or an allosteric effect on the protomer interaction like explained in case of a small TMD specific allosteric modulator of FSHR (Xuliang Jiang et al., 2014). JE10 could also potentiate hCG signaling at sub-saturating concentrations of hCG, the precise mechanism of which is not clear. Through TSHR-LHR chimeric mutants, a stretch from amino acids 313-349, within the hinge region, was identified as the site recognized by JE10. In order to study structural features of the JE10 epitope, LHR ECD was modeled on the basis of FSHRED crystal structure. With most of the motifs being structurally conserved (CF3 and YPSHCCAFF); the major portion of the hinge region was found to be unstructured. This unstructured region harbored the JE10 epitope as well as the functionally important conserved sTyr residue. The CD spectra of LHR hinge in presence of ScFv JE10 suggested a ScFv induced helical conformation and stabilization of the hinge loop region, which was constrained in the homology model into helices. As loop was now constrained in the Mode 2, so was the interaction of sTyr, which was now in contact with positively charged residues, probably stabilizing its charge. The YEY motif mutants further confirmed the indirect essential role of Y331 in activation of LHR by JE10. Another approach followed to study hCG-LHR interactions was use of a series of LHR N-terminal truncation mutants and truncation mutants along with one of the LHR CAM (S277Q/D578Y). The effect of these truncations on hormone binding and receptor activation was investigated. The deletion of Cysteine box (Cb-1) of LHR (present at N-terminus of ECD) leads to abrogation of hCG binding, indicating importance of this region in maintaining ECD conformation required for hormone binding. This is the most unexplored region of the ECD. Though Cb-1 does not bind to the hormone directly (as is evident from the crystal structure) but it is indirectly essential for hormone binding. The basal activity of these truncated mutants was as low as that of the wild type LHR, reconfirming that no region of LHR ECD acts as an inverse agonist for the TMD (Karges, Gidenne, Aumas, Kelly, & Milgrom, 2005). Truncation mutants with CAM (double mutants) also showed low basal activity, suggesting that intact ECD is prerequisite for keeping LHR in a conformation, best suited for hormone binding and binding of G protein for activation. That best conformation still needs to be explored. Truncation mutants did not get stimulated by JE10 also. This observation is opposite to the previous studies in which FSHR/TSHR truncated mutants could be stimulated by hinge specific antibodies (Agrawal & Dighe, 2009; Majumdar & Dighe, 2012). This difference points out to the variations in which LHR hinge-TMD interactions prevail and lead to the receptor activation. This variation was also confirmed with a previous report in which the binding of TSHR-ECL specific antisera to wild type LHR and TSHR-LHR 6 chimeric mutant suggested that hinge of LHR does not seem to be constraining the TMD (Majumdar et al., 2012b). Thus the LHR TMD itself possesses all the inhibitory interactions, also indicated by the presence of most of the activating mutations in LHR TMD (Piersma, Verhoef-post, Berns, & Themmen, 2007). Protomer interaction is the newest aspect of GpHR activation mechanism and has not reached any conclusive, physiologically relevant explanations yet. By co-transfection of wild type LHR and ECD truncated mutants, this study suggests the LHR protomer interaction and proposes the involvement of allosteric effect of ECD on LHR protomer interaction. The effect of JE10 on activating and inactivating mutants of LHR were quite interesting. The ScFv could bind to the activating mutant D578Y (associated with precocious puberty). This mutant exhibited higher basal cAMP production, but was activated even further by the ScFv. The inactivating mutant A593P is a completely inactive receptor associated with (associated with pseudo-hermaphroditism. It does not respond to the hormone at all. The ScFv JE10 binds to this receptor and stimulates cAMP production. This observation is rather striking, as it is possible to activate a completely inactive mutant that could not be stimulated by the hormone by a binder specific for the hinge region. It is not clear how the binder that interacts with the hinge region affects the function of the inactive TMD thus providing an interesting tool to investigate the interactions between the hinge region and TMD that are probably key to understand the activation of GpHR. which has been shown to be central to the GpHR activation mechanism, (Agrawal & Dighe, 2009; Majumdar et al., 2012b; Schaarschmidt, Huth, Meier, Paschke, & Jaeschke, 2014). As per the recently suggested model by Deupi et. al., that each mutation and agonist can take a different pathway during activation (Kobilka & Deupi, 2007). The activated state induced by JE10 in D578Y and A593P seems to be different from the wild type LHR, with each activated receptor state having different capacity to bind to the G protein. The difference in G protein capacity in itself reflects the different receptor turnover or different Gs uncouplings or different Gs binding affinities, which needs to be further investigated, opening up another avenue for exploration. There is a lacuna in understanding the signal relay from the hinge to TMD. However, JE10 seems to be activating the wild type LHR and the mutants directly or indirectly by modulating the 6th helix of the TMD, known to be important for hormone independent activation of LHR (Fanelli, 2000; Latronico & Segaloff, 2007; Majumdar et al., 2012b). As evident from the absence of any hinge mediated constrain on LHR TMD and absence of uncharged residues present in LHR LRRD-TMD interface (LHR ECD Model 1), LHR hinge does not seem to be maintaining significant interactions with the TMD in absence of a ligand or in its basal state. Hormone/ agonist binding or activating mutations act as a positive regulator (inducing conformation change in hinge), required to bridge the interactions between LHR hinge and the TMD, which is supported by various studies in the past (Karges et al., 2005; Majumdar et al., 2012b; Nishi, Nakabayashi, Kobilka, & Hsueh, 2002; Osuga et al., 1997; Ryu, Gilchrist, Tung, Ji, & Ji, 1998; Zeng, Phang, Song, Ji, & Ji, 2001). This interaction bridged by the conformational change in the hinge region, seems to isomerize the closed state of LHR into an activated state. The present study supports the conformational induction model for receptor activation in which intramolecular interactions between the two domains (hinge-TMD) lead to the receptor activation. In conclusion, this study presents a possible mechanism of activation of LHR by a partial agonist ScFv, which induces the conformation change in the disordered loop region (a.a.313-349) of the hinge and stabilizes it into helical state. This conformation change is predicted to be important for relaying the activation signal to the TMD. The study also demonstrates the activation of a completely inactive mutant A593P by JE10, suggesting a distinct possibility of its use as a therapeutic tool in treating infertility caused by inactivating mutations in LHR. On a second note, the study extends the role of LRRs, apart from direct hormone binding, to an indirect allosteric role in hormone binding, LHR activation and functional stability. This functional stability does not seem to be restricted to a single LHR but also depends on its interaction with nearby protomers. Though there are evidences for and against each of the above discussed possibilities, as yet there is no accepted model that explains the precise steps of receptor activation, hence, the molecular details of these interactions needs to be investigated in future.

Nous avons caractérisé cinq protéines bovines qui sont potentiellement impliquées dans la reproduction.Un travail de clonage a été initié qui permettra à terme de purifier les GPA2 et GPB5 recombinantes puis naturelles pour étudier leurs structures. GPA2 et GPB5 sont considérés comme les ancêtres moléculaires des sous-unités α et β des hormones glycoprotéiques. Nous avons montré la relative fragilité thermique de la structure quaternaire de la FSH bovine par rapport aux FSH ovine et humaine et nous avons étudié les propriétés enzymatiques de la PDI (Protein Disulfide Isomerase) en préalable à l’étude de l’activité PDI de GPA2/GPB5. Nous avons aussi purifié la phosphatidyl-ethanolamine-binding protein (PEBP) et l’ubiquitine testiculaires par chromatographie hydrophobe à très haute concentration de sulfate d’ammonium. A partir de la PEBP purifiée, on a produit des anticorps spécifiques chez le lapin qui nous ont permis d’être les premiers à développer un dosage ELISA fiable pour cette protéine. / We characterized five bovine proteins that are potentially involved in reproduction. We started with the cloning of gpa2 and gpb5 cDNAs in order to eventually purify recombinant and natural GPA2 and GPB5 to study their possible quaternary structure. GPA2 and GPB5 are the evolutionary ancestors of Glycoprotein hormones α and β subunits respectively. Meanwhile, we have shown the relative quaternary structure fragility of bovine FSH compared to human and sheep FSH. We also studied the effect of endocrine disruptors on PDI (Protein Disulfide Isomerase) before addressing GPA2/GPB5 PDI activity of GPA2/GPB5 once purified.We succeeded to purify the phosphatidyl-ethanolamine-binding protein (PEBP) and ubiquitin from bovine testis by hydrophobic interaction chromatography at very high ammonium sulfate concentration and we produced specific antibodies (anti-PEBP) in rabbits that allowed us to be the first to develop a reliable Elisa assay for this protein.

Le virus de l’hépatite C (VHC) est l’une des causes majeures de cirrhose du foie et de carcinome hépatocellulaire. Au courant de la première partie de ma thèse, nous nous sommes intéressés à caractériser plus en détail le rôle de SR-BI dans l’infection par le VHC. Bien que les mécanismes impliquant SR-BI dans la liaison du virus à l’hépatocyte aient été partiellement caractérisés, le rôle de SR-BI dans les étapes suivant la liaison du VHC reste encore largement méconnu. Afin de mieux caractériser le rôle de l’interaction VHC/SR-BI dans l’infection par le VHC, notre laboratoire à généré une nouvelle classe d’anticorps monoclonaux anti-SR-BI inhibant l’infection virale. Nous avons pu démontrer que SR-BI humain jouait un rôle dans le processus d’entrée du virus à la fois lorsde l’étape de liaison du virus à la cellule hôte mais aussi au cours d’étapes suivant cette liaison. Ainsi il serait intéressant de cibler cette fonction de SR-BI dans le cadre d’une stratégie antivirale pour lutter contre l’infection parle VHC. Dans la seconde partie de ma thèse, nous avions pour but de caractériser les mécanismes moléculaires intervenant dans la réinfection du greffon lors de la transplantation hépatique (TH). Nous avons ainsi identifiés 3 mutations adaptatives dans la glycoprotéine d’enveloppe E2 responsables de l’entrée virale augmentée du variant hautement infectieux. Ces mutations influent sur la dépendance au récepteur CD81 du VHC résultant en une entrée virale accrue. L’identification de ces mécanismes va nous permettre une meilleure compréhension de la pathogénèse de l’infection par le VHC, et est un premier pas pour le développement d’une stratégie préventive antivirale ou vaccinale. / Hepatitis C virus (HCV) is a major cause of liver cirrhosis and hepatocellular carcinoma. In the first part of my PhD, we aimed to further characterize the role of scavenger receptor class B type I (SR-BI) in HCV infection. While the SR-BI determinants involved in HCV binding have been partially characterized, the post-binding function of SR-BI remains remained largely unknown. To further explore the role of HCV-SR-BI interaction during HCV infection, we generated a novel class of anti-SR-BI monoclonal antibodies inhibiting HCV infection. We demonstrated that human SR-BI plays a dual role in the HCV entry process during both binding and post-binding steps. Targeting the post-binding function of SR-BI thus represents an interesting antiviral strategy against HCV infection. In the second part of my PhD, we aimed to characterize the molecular mechanisms underlying HCV re-infection of the graft after liver transplantation (LT). We identified threeadaptive mutations in envelope glycoprotein E2 mediating enhanced entry and evasion of a highly infectious escape variant. These mutations markedly modulated CD81 receptor dependency resulting in enhanced viral entry. The identification of these mechanisms advances our understanding of the pathogenesis of HCV infection and paves the way for the development of novel antiviral strategies and vaccines.

Made available in DSpace on 2016-06-02T20:21:35Z (GMT). No. of bitstreams: 1 6279.pdf: 1318446 bytes, checksum: 3ea93c315d61578a7b50605db41ae915 (MD5) Previous issue date: 2014-02-28 / Financiadora de Estudos e Projetos / Among the sheep parasites, Haemonchus contortus is the most prevalent and pathogenic nematode in tropical areas, causing huge economic losses. Alterations in the gene encoding the membrane P-glycoprotein (PgP) have been associated with multidrug resistance. The goal of this study was to identify single nucleotide polymorphisms (SNPs) on the PgP gene in H. contortus by comparing two isolates with different status of anthelmintic resistance. For this purpose, two ewes were experimentally infected, one with a susceptible H. contortus isolate (McMaster, Australia) and the other with a multidrug-resistant isolate (Embrapa2010, Brazil). Feces from infected animals were submitted to coproculture in order to obtain larvae and, after the slaughter of the ewes, adults H. contortus were collected from abomasum and individually submitted to DNA extraction. For the evaluation of potential molecular markers of geographic isolation, larvae originating from coprocultures of two other Brazilian isolates (Bahia and Pernambuco), with no determined resistance status, were also submitted to DNA extraction. After PCR amplification of DNA extracted from adults H. contortus, a fragment of the PgP gene was sequenced and six SNPs (position described in relation to the sequence of contig 004690 from the Wellcome Trust Sanger Institute) were identified : 508 (A> G in exon), 580 (G> A), 601 (G> C), 800 (G> A), 845 (G> T), and 878 (G> T), the last five in introns. The Fisher's exact test, applying the Bonferroni correction, revealed a significant association (P<0.01) between 508, 580, 601, 845 and 878 SNPs and the state of resistance to anthelmintics. Among these SNPs, 601 and 878 are in linkage disequilibrium and form the CC haplotype associated (P < 0.05) to resistance and the GG haplotype associated to susceptibility. Considering that there is considerable genetic differentiation between different continental areas in H. contortus, the frequencies of the SNPs were compared between the Brazilian isolates and the susceptible Australian one. It was found that the SNPs 580 and 845 may be associated with geographic isolation. We conclude that the 508, 601 and 878 SNPs in the P-glycoprotein gene can be molecular markers for multiple resistance to anthelmintics, and that the 580 and 845 SNPs can be candidate markers of geographical isolation in H. contortus. We developed software for Risk Analysis Development of Parasitic Resistance to Anthelmintics in Sheep (SARA) which will provide information that may guide the rational use of anthelmintics. / Among the sheep parasites, Haemonchus contortus is the most prevalent and pathogenic nematode in tropical areas, causing huge economic losses. Alterations in the gene encoding the membrane P-glycoprotein (PgP) have been associated with multidrug resistance. The goal of this study was to identify single nucleotide polymorphisms (SNPs) on the PgP gene in H. contortus by comparing two isolates with different status of anthelmintic resistance. For this purpose, two ewes were experimentally infected, one with a susceptible H. contortus isolate (McMaster, Australia) and the other with a multidrug-resistant isolate (Embrapa2010, Brazil). Feces from infected animals were submitted to coproculture in order to obtain larvae and, after the slaughter of the ewes, adults H. contortus were collected from abomasum and individually submitted to DNA extraction. For the evaluation of potential molecular markers of geographic isolation, larvae originating from coprocultures of two other Brazilian isolates (Bahia and Pernambuco), with no determined resistance status, were also submitted to DNA extraction. After PCR amplification of DNA extracted from adults H. contortus, a fragment of the PgP gene was sequenced and six SNPs (position described in relation to the sequence of contig 004690 from the Wellcome Trust Sanger Institute) were identified : 508 (A> G in exon), 580 (G> A), 601 (G> C), 800 (G> A), 845 (G> T), and 878 (G> T), the last five in introns. The Fisher's exact test, applying the Bonferroni correction, revealed a significant association (P<0.01) between 508, 580, 601, 845 and 878 SNPs and the state of resistance to anthelmintics. Among these SNPs, 601 and 878 are in linkage disequilibrium and form the CC haplotype associated (P < 0.05) to resistance and the GG haplotype associated to susceptibility. Considering that there is considerable genetic differentiation between different continental areas in H. contortus, the frequencies of the SNPs were compared between the Brazilian isolates and the susceptible Australian one. It was found that the SNPs 580 and 845 may be associated with geographic isolation. We conclude that the 508, 601 and 878 SNPs in the P-glycoprotein gene can be molecular markers for multiple resistance to anthelmintics, and that the 580 and 845 SNPs can be candidate markers of geographical isolation in H. contortus. We developed software for Risk Analysis Development of Parasitic Resistance to Anthelmintics in Sheep (SARA) which will provide information that may guide the rational use of anthelmintics. / Entre os parasitas de ovinos, Haemonchus contortus é o nematoide mais prevalente e patogênico em áreas tropicais, causando grandes perdas econômicas. As alterações no gene que codifica a glicoproteína-P de membrana (PgP) foram associadas com a resistência a múltiplas drogas. Assim, o objetivo deste estudo foi identificar polimorfismos de nucleotídeo único (SNPs) no gene PgP em H. contortus por comparação de dois isolados com diferentes status de resistência a anti-helmínticos. Para esse fim, uma ovelha foi infectada experimentalmente com o isolado suscetível (McMaster, Austrália) e outra ovelha com o isolado multirresistente (Embrapa2010, Brasil) de H. contortus. Fezes dos animais infectados foram submetidas à coprocultura para a obtenção de larvas e, após o abate das ovelhas, H. contortus adultos foram colhidos do abomaso e individualmente submetidos à extração de DNA. Para a avaliação de possíveis marcadores moleculares de isolamento geográfico, larvas oriundas de coprocultura de dois outros isolados brasileiros (Bahia e Pernambuco), com status de resistência não determinado, também foram submetidas à extração de DNA. Após amplificação por PCR do DNA extraído de H. contortus adultos, um fragmento do gene PgP foi sequenciado e foram identificados seis SNPs (posição descrita em relação à sequência do contig 004690 do Wellcome Trust Sanger Institute): 508 (A>G, em éxon), 580 (G>A), 601 (G>C), 800 (G>A), 845 (G>T) e 878 (G>T), os cinco últimos em íntrons. O teste exato de Fisher, por meio da correção de Bonferroni, revelou associação significativa (P<0,01) entre os SNPs 508, 580, 601, 845 e 878 e o estado de resistência a anti-helmínticos. Desses SNPs, o 601 e o 878 estão em desequilíbrio de ligação e formam os haplótipos CC, que está associado (P<0,05) à resistência, e GG, à suscetibilidade. Levando em consideração que em H. contortus há considerável diferenciação genética entre áreas continentais distintas, as frequências dos SNPs foram comparadas entre os isolados brasileiros e o isolado suscetível australiano e foi verificado que os SNPs 580 e 845 podem estar associados ao isolamento geográfico. Conclui-se que os SNPs 508, 601 e 878 no gene de glicoproteína-P podem ser marcadores moleculares para a resistência múltipla a anti-helmínticos, e os SNPs 580 e 845 candidatos a marcadores de isolamento geográfico em H. contortus. Nós desenvolvemos um software para Análise de Risco de Desenvolvimento de Resistência Parasitária a Anti- Helmínticos em Ovinos (SARA) que fornecerá informações que poderão orientar a utilização racional de anti-helmínticos. / Entre os parasitas de ovinos, Haemonchus contortus é o nematoide mais prevalente e patogênico em áreas tropicais, causando grandes perdas econômicas. As alterações no gene que codifica a glicoproteína-P de membrana (PgP) foram associadas com a resistência a múltiplas drogas. Assim, o objetivo deste estudo foi identificar polimorfismos de nucleotídeo único (SNPs) no gene PgP em H. contortus por comparação de dois isolados com diferentes status de resistência a anti-helmínticos. Para esse fim, uma ovelha foi infectada experimentalmente com o isolado suscetível (McMaster, Austrália) e outra ovelha com o isolado multirresistente (Embrapa2010, Brasil) de H. contortus. Fezes dos animais infectados foram submetidas à coprocultura para a obtenção de larvas e, após o abate das ovelhas, H. contortus adultos foram colhidos do abomaso e individualmente submetidos à extração de DNA. Para a avaliação de possíveis marcadores moleculares de isolamento geográfico, larvas oriundas de coprocultura de dois outros isolados brasileiros (Bahia e Pernambuco), com status de resistência não determinado, também foram submetidas à extração de DNA. Após amplificação por PCR do DNA extraído de H. contortus adultos, um fragmento do gene PgP foi sequenciado e foram identificados seis SNPs (posição descrita em relação à sequência do contig 004690 do Wellcome Trust Sanger Institute): 508 (A>G, em éxon), 580 (G>A), 601 (G>C), 800 (G>A), 845 (G>T) e 878 (G>T), os cinco últimos em íntrons. O teste exato de Fisher, por meio da correção de Bonferroni, revelou associação significativa (P<0,01) entre os SNPs 508, 580, 601, 845 e 878 e o estado de resistência a anti-helmínticos. Desses SNPs, o 601 e o 878 estão em desequilíbrio de ligação e formam os haplótipos CC, que está associado (P<0,05) à resistência, e GG, à suscetibilidade. Levando em consideração que em H. contortus há considerável diferenciação genética entre áreas continentais distintas, as frequências dos SNPs foram comparadas entre os isolados brasileiros e o isolado suscetível australiano e foi verificado que os SNPs 580 e 845 podem estar associados ao isolamento geográfico. Conclui-se que os SNPs 508, 601 e 878 no gene de glicoproteína-P podem ser marcadores moleculares para a resistência múltipla a anti-helmínticos, e os SNPs 580 e 845 candidatos a marcadores de isolamento geográfico em H. contortus. Nós desenvolvemos um software para Análise de Risco de Desenvolvimento de Resistência Parasitária a Anti- Helmínticos em Ovinos (SARA) que fornecerá informações que poderão orientar a utilização racional de anti-helmínticos.

La glycoprotéine P ou Pgp est une protéine de transport transmembranaire qui a pour rôle principal d'évacuer hors des cellules les xénobiotiques et les toxines. Elle agit comme une pompe à efflux et est surexprimée par certaines cellules cancéreuses. Ainsi, via ce mécanisme, les cellules tumorales peuvent devenir résistantes aux antitumoraux et conduire à l'échec des traitements lors de la chimiothérapie anticancéreuse. Aussi, la modulation de l'activité de cette protéine peut être un des moyens permettant l'amélioration des traitements anticancéreux. La Pgp possède plusieurs sites de fixation de substrats dont deux sont relativement proches spatialement : un site à stéroïdes et un site à ATP permettant d'hydrolyser l'ATP, source d'énergie nécessaire au fonctionnement de la Pgp. Notre objectif a été de synthétiser des modulateurs bivalents stéroïdes/bras/nucléosides. Pour cela, nous avons dans un premier temps préparé des analogues de bases puriques et plus particulièrement des didéazapurines, les 5- et 6-azaindoles et les trioxopyrrolopyridines correspondant puis effectué la glycosylation de ces derniers. Dans un second temps, des modulateurs stéroïdiens ont été synthétisés : plusieurs ont montré une bonne activité modulatrice de la Pgp. Enfin, des bras polyéthylènes glycols de longueurs variables ont été reliés à l'adénine pour être ensuite fixés aux stéroïdes via une fonction amide / P-glycoprotein Pgp is a transmembrane transporter protein that protects cells from potentially toxic exogenous compounds. This protein acts as a molecular pump and is overexpressed in cancer cells. So via that mechanism, tumor cells exhibit intrinsic or acquired cross-resistance to diverse chemotherapeutic agents, resulting in the failure of chemotherapy for some cancers. The modulation of the efflux activity of that protein can be one of the mean that could increase anticancer treatments efficiency. Pgp has different substrates sites, two of which are spatially close : the steroid site and the ATP site, the latter is in charge of ATP hydrolysis which give the required energy for the Pgp efflux activity. Our goal was to synthesize bivalent modulators steroids/linker/nucleosides. First we have obtained purine bases analogues and particularly didéazapurines such as 5- and 6-azaindoles and the corresponding trioxopyrrolopyridines, then we have carried out the glycosylation of those compounds. Then, steroids modulators have been synthesized : some of them have shown a good modulation activity toward Pgp. Finally, polyethylene glycols chains with different length have been grafted on adenine so that they could be attached to the steroids via an amide function

Made available in DSpace on 2016-08-17T18:39:44Z (GMT). No. of bitstreams: 1 4615.pdf: 2688296 bytes, checksum: 18c8fbe6fb83004856a32c02827d70f5 (MD5) Previous issue date: 2011-11-22 / Universidade Federal de Sao Carlos / Rabies is a zoonotic viral disease caused by a virus of the genus Lyssavirus that affects several species of mammals. Rabies remains a global public health threat that kills more than 55,000 people per year mainly in developing countries, this disease once established do not have a specific treatment. The RV envelope is composed of a glycoprotein, known as a unique antigen capable of conferring immune response against the rabies, and therefore, is the focus of research for development an efficient and safe recombinant vaccine based on this viral antigen. Cell line stably transfected S2 Drosophila melanogaster have been used in the production of many heterologous proteins and has been studied for the production of the rabies virus glycoprotein (RVGP) in our laboratory. This approach involves the selection of high producing cell populations; procedure that requires considerable periods of time (months), increasing management and costs of production. In this sense, in recent decades, many systems focused on the expression of heterologous proteins by transient expression of genes, were analyzed because they allow obtaining significant quantities of recombinant protein in a short period of time (weeks). For the use of transient transfection technology can be found a variety of methods and available agents, such as electroporation, cationic lipids, cationic polymers and calcium phosphate precipitated. The choice and optimization of each of them depends mainly on the cell type and protein being expressed. Thus, the objective of this study was to evaluate the transient expression of the glycoprotein gene of rabies virus (RVGP) in insect cells of Drosophila melanogaster S2 lineage, evaluating the vehicles transfection: calcium phosphate, cationic lipid (Cellfectin) and cationic polymer (ExGen500 and JetPEI). In order to determine the most efficient transfection agent, experiments were performed in 6 well plate and bottle of 100 mL of culture, which analyzed the influence of cell density, the concentration of DNA and transfection reagent volume on the expression of RVGP assessed by ELISA and fluorescence microscopy. Yields ranging from 50-90 ng/107cel were obtained in different experiments on multiwell plate, suggesting strong effect of ratio DNA: transfection agent used. Comparison of transfection agents showed no significant differences. In transfections made in suspension culture was analyzed the effect of the plasmid (whether or not the signal of BiP cell secretion) on the expression RVGP. When we used the plasmid containing the signal BiP (pMTiRVGP) were obtained 160 ng/107cel of RVGP production, and 200 ng/mL of volumetric production without significant differences between the different transfection agents. However, significant differences were found when we used the plasmid not containing the signal BiP (pMTRVGP), with the RVGP production was 60 ng/107cells in cells transfected with Cellfectin, ExGen500 and calcium phosphate, except in cells transfected with JetPEI was reached a production of 120 ng/107cells. In preliminary experiment bottle type "spinner" with a working volume of 60 mL were achieved expressions of 140 ng/107cel of RVGP in cells transfected with JetPEI and calcium phosphate. This suggests that optimization of culture conditions and transfection are possible to increase recombinant protein expression in cultured on a large scale. / A raiva é uma enfermidade causada por um vírus do gênero Lyssavirus que afeta várias espécies de mamíferos. Esta doença apresenta um alto custo social e econômico principalmente em países em desenvolvimento. Na superfície do vírus da raiva está localizada a glicoproteína do vírus, reconhecida como antígeno capaz de conferir resposta imunológica contra a raiva, sendo, o foco de pesquisas no desenvolvimento de uma vacina recombinante. Células da linhagem Drosophila melanogaster S2 estavelmente transfectadas têm sido usadas na produção de muitas proteínas heterólogas e tem sido estudada para a produção da glicoproteína do vírus da raiva (RVGP) em nosso laboratório. A abordagem para a obtenção de linhagens recombinantes estáveis envolve a seleção de populações celulares altamente produtoras; sendo um processo que requer consideráveis períodos de tempo (meses), uma elevada manipulação e altos custos de produção. Neste sentido, nas últimas décadas, muitos sistemas focados na expressão de proteínas heterólogas através da expressão transiente de genes foram analisados, porque eles permitem a obtenção de quantidades consideráveis de proteína recombinante em um curto período de tempo (semanas). Para o uso da tecnologia de transfecção transiente pode ser encontrada uma variedade de métodos e agentes disponíveis, tais como eletroporação, lipídeos catiônicos, polímeros catiônicos e fosfato de cálcio. Assim, o objetivo deste trabalho foi avaliar a expressão transiente do gene da glicoproteína do vírus da raiva (RVGP) em células de inseto da linhagem Drosophila melanogaster S2, avaliando os veículos de transfecção fosfato de cálcio, lipídeo catiônico (Cellfectin) e polímero catiônico (ExGen500 e JetPEI). A fim de determinar o agente de transfecção mais eficiente, foram feitos experimentos em placa de 6 poços e frasco de cultivo de 100mL, onde foram analisados a influência da densidade celular; a concentração de DNA, o volume do reagente de transfecção sobre a expressão da RVGP analisada através do método de ELISA. Quantidades de RVGP que variaram entre 50-90 ng/107cel foram obtidas nos diferentes experimentos feitos em placa, sugerindo um efeito da relação DNA: agente de transfecção. A comparação entre os agentes de transfecção não mostrou diferenças significativas. Nas transfecções feitas em cultura em suspensão foi analisado o efeito de transfectar o plasmídeo para expressão de RVGP contendo ou não o sinal de secreção celular BiP. Quando foi usado o plasmídeo contendo o sinal BiP (pMTiRVGP) foram atingidas valores de RVGP de 160 ng/107cel e produções volumétricas de 200 ng/mL, porém sem diferenças significativas entre os diferentes agentes de transfecção. Entretanto, foram encontradas diferenças quando foi usado o plasmídeo não contendo o sinal BiP (pMTRVGP), onde a produção de RVGP foi de 60 ng/107cells nas células transfectadas com Cellfectin, ExGen500 e fosfato de cálcio, porém as células transfectadas com JetPEI obtiveram uma produção de 120 ng/107cels de RVGP. Em experimento em frasco de cultivo tipo spinner com volume de trabalho de 60 mL, foram atingidas expressões de RVGP de 140 ng/107cel para células transfectadas com JetPEI e fosfato de cálcio, sugerindo que otimizações nas condições de cultivo e transfecção ainda podem ser testadas visando aumentar a expressão da proteína recombinante em cultivos em larga escala.

Made available in DSpace on 2014-06-11T19:23:46Z (GMT). No. of bitstreams: 0 Previous issue date: 2009-02-19Bitstream added on 2014-06-13T20:30:45Z : No. of bitstreams: 1 munhoz_td_me_jabo.pdf: 517533 bytes, checksum: 9d7063c670aa086ee9a1d333248d04b8 (MD5) / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) / Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) / A erliquiose canina é uma doença de alta incidência na região nordeste do Estado de São Paulo, sendo responsável pela morte de muitos cães. O diagnóstico precoce favorece a pronta instituição do tratamento e melhora o prognóstico do animal. Estudos têm apontado que a determinação da concentração de proteínas de fase aguda (PFA) pode contribuir para detecção precoce de doenças e auxiliar na predição do prognóstico. O presente estudo objetivou avaliar o perfil de proteínas de fase aguda (PFA) em cães experimentalmente infectados com Ehrlichia canis, amostra Jaboticabal, no início da infecção e após o tratamento. Para tanto, foram utilizados 10 cães sem contato prévio com hemoparasitas. Deste, cinco foram infectados e cinco serviram de controle da infecção. Hemogramas, nested PCR, detecção de anticorpos anti-E. canis e eletroforetograma de proteínas séricas foram realizados em períodos pré-determinados. Os resultados mostraram que a proteína-C reativa, ceruplasmina e a α1-glicoproteína ácida tiveram suas concentrações aumentadas antes do aparecimento dos sinais clínicos e das alterações de hemograma nos cães infectados. Os sinais clínicos da doença tornaram-se evidentes por volta do 17º dia de infecção. Trombocitopenia foi registrada a partir do 3º dia de infecção. Mórulas intracitoplasmáticas foram detectadas a partir do 15º dia. Títulos sorológicos anti-E. canis, variando de 1:2560 a 1:5120, e nPCR positiva foram evidenciados no 18º dia. Nas avaliações após o tratamento os cães infectados estavam assintomáticos, com nPCR negativo e acentuada redução dos títulos de anticorpos específicos em quatro dos cinco cães. Todas as PFA estudadas reduziram suas concentrações a títulos próximos aos iniciais. Este estudo mostrou que as mensurações das PFA contribuem para o diagnóstico precoce e predição de cura... / Canine ehrlichiosis is an endemic disease, with high incidence in the Northwest area of Sao Paulo State – Brazil and it is responsible for the death of numerous dogs. The rapid and accurate diagnosis helps the prompt establishment of treatment and improves the prognosis of the animal. Evidence has shown that the measurement of acute phase proteins (APP) can contribute for the early detection of the disease and help to predict its prognosis. This study evaluated the profile of APP in dogs experimentally infected with Ehrlichia canis, Jaboticabal – SP – Brazil sample, at the onset of the infection and after its treatment. Ten dogs, with no previous hemoparasitosis, were randomly assigned in either the infected group (5 animals), which received the bacteria, or the control group (5 animals). In pre-determined intervals, their blood was colected and hemogram, nested PCR, anti-E. canis antibodies detection and tritation and eletrophoresis of serum proteins were performed. We showed that, in infected dogs, the concentration of C-reactive protein, ceruplasmin and α-1 acid glycoprotein were increased previous to the clinical signs forthcoming and hemogram alterations. The clinical signs were evident around the 17th day of infection. Thrombocytopenia was found on the 3th day of infection. Intra-cytosolic morules were detected on the 15th day of infection. Sorologic tritation of anti-E. canis, ranging from 1:2560 to 1:5120, and positive nPCR were found on the 18th day of infection. In the post-treatment evaluation, the infected dogs were asymptomatic with negative nPCR and decreased tritation of specific antibodies in four out of five dogs. All APP analyzed were similar to basal levels. This study showed that the measurement of APP can, indeed, contribute for the early diagnosis and prediction of cure, after treatment, of the experimental acute phase of canine Ehrlichiosis.