As paredes celulares vegetais são estruturas essenciais para o crescimento e desenvolvimento das plantas. Além das suas diversas funções biológicas, os componentes polissacarídicos constituintes das paredes celulares (celulose, hemiceluloses e pectinas) são de vital importância como fonte natural de fibras para a nutrição humana e animal e são considerados os principais recursos renováveis do planeta, utilizados como matéria-prima para diversos processos industriais, por exemplo nos processos de produção de polpa celulósica. Todos esses fatores têm despertado grande interesse no estudo da composição e biossíntese das paredes celulares. A biossíntese dos seus polímeros se inicia no citoplasma das células, onde ocorre a formação dos precursores por uma rota metabólica complexa de biossíntese de açúcares-nucleotídeo. O entendimento da regulação dessa rota metabólica é fundamental para modular a dinâmica de biossíntese desses açúcares e assim tentar manipular as propriedades bioquímicas das paredes celulares. Nesse contexto, o presente projeto de pesquisa teve como objetivo avaliar o efeito da superexpressão do gene miox2 de Arabidopsis thaliana em plantas de Nicotiana tabacum. O produto desse gene é a enzima mio-inositol oxigenase (E.C. 1.13.99.1), cuja função é converter o mio-inositol em ácido D-glucurônico, composto central da rota de biossíntese de açúcares-nucleotídeo. Foram determinadas quatro isoformas tecido-específicas para o gene miox (miox1, miox2, miox4 e miox5) em Arabidopsis, sendo que a isoforma miox2 é a predominante em caules. Esse gene foi clonado em trabalhos anteriores realizados no laboratório e no presente trabalho, o cDNA do gene miox2 foi superexpresso em plantas de tabaco (Nicotiana tabacum) a fim de se avaliar o efeito da superexpressão na composição de carboidratos de parede celular secundária. As linhagens de plantas transgênicas obtidas, não mostraram diferenças visualmente perceptíveis em comparação aos controles, indicando ausência de alterações fisiológicas e morfológicas. Foram quantificados os monossacarídeos de paredes celulares secundárias (arabinose, ramnose, galactose, glicose, xilose, manose), os ácidos urônicos (ácido galacturônico e glucurônico) e as ligninas (solúvel e insolúvel), a partir de tecido xilemático e parênquima medular do caule. A ausência de modificações significativas nas proporções desses metabólitos, indica que as plantas exercem um estrito controle na regulação da biossíntese de paredes celulares secundárias de forma que a superexpressão do gene miox2 não provocou nenhuma alteração altamente significativa. Outros genes candidatos e os mecanismos envolvidos na sua regulação deverão ser testados quanto ao nível de transcrição, modificações pós-trancricionais e pós-traducionais a fim de entender a regulação do fluxo de carbono para a biossíntese de paredes celulares. / Cell-walls are essential structures for plant development and growth. Apart from its biological functions, the polyssacharides that make cell-walls (cellulose, hemicellulose and pectins) are the principal natural fibrous materials used for human and animal nutrition. They are also considered the most important renewable resource on earth and their use as industrial raw material is inevitable. An example is the use of wood in the production of pulp and paper. For all these reasons, the study of molecular composition and biosynthesis of plant cell-walls has been a matter of great interest for researchers over the past few years. Cell-wall polyssacharides biosynthesis begins at the cytoplasm, where a pool of UDP-glucose and other activated sugar nucleotide precursors are generated by multiple and complex interconvertion reactions. Understanding how cells control the metabolic pathways responsible for sugar nucleotide precursors synthesis, would be a primary requirement for manipulating them in an attempt to generate plants with improved properties for human use. In that context, tha aim of this research work was to analyze the effects of Arabidopsis thaliana miox2 gene overexpression in a plant model system (Nicotiana tabacum). The product of miox2 gene is myo-inositol oxygenase enzyme 2 (E.C.1.13.99.1) which converts D-glucuronic acid, an important sugar nucleotide precursor, from its substrate myo-inositol. Four isoforms of miox gene, with apparent tissue specific expression (miox1, miox2, miox4 and miox5) were already determined, but miox2 is the one primarily expressed in stems. Its cDNA was cloned from Arabidopsis thaliana in previous works and overexpressed in tobacco plants. Five normal transgenic lines were obtained, showing no phenotypically differences relative to the control line. This fact implied that miox2 overexpression did not alter any physiological nor morphological aspect of plant development. The cell-wall monossacharides (arabinose, rhamnose, galactose, glucose, xylose and mannose), uronic acids (galacturonic and glucuronic acid) and lignins (soluble and insoluble) from stem xylem and parenchymal tissue were quantified. The absence of major changes in any of the compounds measured for the transgenic lines indicated that they were able to adjust their level of carbohydrate composition. Plants seem to regulate the proportions of sugar nucleotide precursors through highly complex metabolic pathways that establish strong compensatory mechanisms. It will be necessary to study other candidate genes and some aspects of their regulation at transcriptional, postranscriptional and postransaltional level, as an attempt to understand the cell-wall carbohydrate flux.

A parede celular vegetal, estrutura essencial para as plantas, é extremamente importante para a economia humana, já que apresenta diversas utilidades, como por exemplo, fabricação de papel, fibras de vestuário, construção civil, entre outras. A maior parte da parede celular vegetal primária (aproximadamente 90%), é formada por polissacarídeos como celulose, hemiceluloses e pectinas. Os monossacarídeos, unidades formadoras dos polissacarídeos, são sintetizados, nas plantas, a partir de diferentes açúcares nucleotídeos, sendo que, o suprimento desses, pode afetar a biossíntese dos polissacarídeos da parede celular. Visando analisar o impacto da alteração do fluxo metabólico do carbono na composição da parede celular, o presente projeto de pesquisa teve como objetivo alterar a composição dos polissacarídeos da parede celular de Nicotiana tabcum, através da modulação da expressão do gene uxs, responsável pela codificação da enzima UDP-D-glucuronato descarboxilase (UDPGlcADC, EC 4.1.1.35) que converte UDP-D-glucuronato em UDP-D-xilose, importante açúcar nucleotídeo, precursor do monossacarídeo xilose. Para isso, após a clonagem do gene uxs de ervilha, foram obtidas plantas transgênicas de tabaco superexpressando esse gene. Diversas análises foram realizadas para determinação da composição química da parede celular primária e secundária dessas plantas. Pela análise de FTIR da parede celular primária, verificou-se que três linhagens transgênicas apresentaram espectrotipos consistentes, indicando uma redução na quantidade de pectinas e ligações ésteres carboxílica nessas linhagens transgênicas. Apesar de não terem sido detectadas alterações na proporção dos monossacarídeos ramnose, xilose, arabinose, manose e galactose, e na quantidade de celulose, na parede celular primária das plantas transgênicas, foram observadas diferenças na proporção de galactose não esterificada, nas linhagens que apresentaram espectrotipo. Com relação à parede celular secundária, observou-se que algumas linhagens transgênicas apresentaram maior concentração de lignina solúvel relacionada a uma redução no conteúdo de lignina insolúvel. / The plant cell wall is not only an essential structure for plants, but also an extremely important raw material in human economy. The plant cell wall has diverse utilities, for example, papermaking, textile fiber, civil construction. Polysaccharides, such as cellulose, hemicelluloses and pectins, are the major components of the primary plant cell wall (approximately 90%). These polysaccharides are formed by monosaccharides, which are synthesized in the plant from different nucleotide sugars. The suppliment of the nucleotide sugars can affect plant cell wall polysaccharides biosynthesis. Aiming at analyzing the impact of the alteration in the metabolic carbon flux on cell wall composition, the objective of this research project was to alterate the plant cell wall polysaccharides composition by the modulation of the uxs gene. This gene encodes the UDP-D-glucuronic acid decarboxylase enzyme (UDPGlcADC, EC 4.1.1.35) that promotes the conversion of UDP-D-glucuronic acid to UDP-D-xylose, an important sugar nucleotide precursor of xylose monosaccharide. To achieve this goal, the pea uxs gene was cloned and transgenic tobacco plants overexpressing this gene were obtained. Several analyses were performed to determinate the primary and secondary cell wall composition of those transgenic plants. The primary cell wall analysis by FTIR identified three transgenic lines that show different spectrotypes compared to wild type and those transgenic spectrotypes had the same features. The results indicate a reduction of pectin and ester carbonyl binding in the transgenic plants. No alterations were detected in the monosaccharide (rhamnose, xylose, arabinose, manose and galactose) proportions and the amount of cellulose in the primary cell wall of the transgenic plants. Nevertheless, differences in the proportion of unesterified galactose were observed in the same transgenic lines that showed spectrotypes. With regard to secondary cell wall, some transgenic lines showed an increase in soluble lignin which is related to a reduction in insoluble lignin.

La formation du duramen est un processus physiologique clé impliqué dans la qualité du bois puisqu'il contribue notamment à sa durabilité naturelle. L'objectif de cette thèse est de comprendre les mécanismes mis en jeu lors de la formation du duramen chez le douglas. L'étude a été menée aux niveaux phénotypiques, biochimiques et moléculaires sur plusieurs génotypes de douglas. Des études phénotypiques, il ressort que la proportion de duramen serait sous influence génétique et très peu environnementale, et que l'expansion du bois de coeur se déroule principalement en automne-hiver. Afin de caractériser la composition biochimique du bois, une nouvelle méthode a été développée. Elle repose sur la dissolution du bois dans des liquides ioniques, les solutions obtenues sont ensuite immuno-marquées à l'aide d'anticorps dirigés contre des épitopes de polymères pariétaux. Cette méthode a permis d'observer l'évolution, cerne par cerne, de la composition pariétale du bois de l'aubier externe au coeur du duramen. Certains polymères sont plus abondants dans l'aubier (arabinanes), tandis que d'autres dans le duramen (pectines, xylanes et galactanes). En parallèle, les gènes impliqués dans la formation du duramen ont été étudiés par RNA-Seq à partir de douglas appartenant à un seul génotype et abattus en hiver. Les résultats montrent que des gènes codant des facteurs de transcription, des protéines de défense, des enzymes de la voie de biosynthèse des phénylpropanoides et des enzymes impliquées dans le remodelage de la paroi sont surexprimés dans la zone de transition par rapport à l'aubier. Des hormones, l'éthylène et le jasmonate notamment, semblent jouer un rôle important dans la maturation de l'aubier. / The heartwood formation is a key physiological process involved in wood quality because it contributes to its natural durability. The goal of this thesis is to understand mechanisms involved in the heartwood formation in douglas fir. This study has been carried out at phenotypic, biochemical and molecular levels from several douglas-fir genotypes. Thanks to phenotypic analysis, we showed that heartwood proportion is probably under genetic control, and little influenced by the environment. In douglas fir, heartwood expansion mainly occurs during autumn and winter. To characterize the biochemical composition of wood, a new method has been developed. The method implies the wood dissolution in ionic liquid, the solution obtained are then analyzed by immunodetection with monoclonal antibodies against plant cell wall glycan epitopes. Thanks to this method, the wood cell wall composition has been studied, ring-by-ring, from the outer sapwood to the inner heartwood. Some polymers are more abundant in the sapwood (arabinans) while others in the heartwood (pectins, xylans and galactans). Then, genes involved in the heartwood formation have been studied by RNA-Seq from trees belonging to one genotype sampled during winter. Results show that genes encoding transcription factors, defence related proteins, enzymes involved in phenylpropanoid biosynthesis and plant cell wall modification are upregulated in transition zone compared to sapwood. Hormones, ethylene and jasmonate especially, seem to play an important role during sapwood maturation.

Le contrôle moléculaire du patterning au cours des processus développementaux est aujourd’hui bien décrit chez les organismes multicellulaires. A l’inverse, la contribution de la croissance dans l’émergence des patterns reste peu explorée, et est souvent réduite à un rôle passif. Au cours de cette thèse, j’ai étudié cette question en utilisant le méristème apical caulinaire (MAC) d’Arabidopsis comme modèle. Le méristème est un groupe de cellules en divisions situé à l’extrémité de toutes les tiges et les branches et qui génère tous les organes aériens de la plante selon un patron stéréotypé, aussi appelé phyllotaxie. Dans une première partie, j’ai étudié comment la croissance de la tige pouvait influencer le patron phyllotactique. Plus précisément, en découplant dépôt de la cellulose dans la paroi et l’orientation des microtubules, j’ai montré que le patron de phyllotaxie devenait bimodal en raison de l’induction d’une torsion lors de la croissance de la tige. Dans une seconde partie, j’ai analysé le lien entre forme du MAC et expression génétique. En particulier, j’ai pu corréler l’expression d’un gène maître : SHOOTMERISTEM LESS (STM) au degré de courbure dans le MAC. De plus, en utilisant des approches de micromécaniques, j’ai aussi pu montrer que l’expression de STM pouvait être induite par le patron de contraintes localement généré par la courbure. Pour finir, j’ai aussi étudié comment la taille du méristème influence la robustesse du pattern de phyllotaxie sur la tige en modulant la fréquence d’initiation des organes. L’ensemble de ce travail met ainsi en avant le rôle de la croissance dans le patterning, notamment via des mécanismes de rétrocontrôles géométriques et mécaniques. / The molecular mechanisms behind the emergence of patterns during developmental processes have been well described in multicellular organisms. However, the contribution of growth in patterning is still poorly understood; growth is often seen as a passive output of the activity of the patterning signals. In this PhD, I have studied the relation between growth and patterning using the shoot apical meristem of Arabidopsis as a model system. The meristem is a group of dividing cells located at the tip of every stems and branches that generates all the aerial organs of the plant following a typical spatio-temporal pattern also called phyllotaxis. In a first part, the influence of post-meristematic growth on phyllotaxis was assessed. More precisely, by uncoupling cellulose deposition from the orientation of the microtubule array, I showed that the resulting stem torsion induces the emergence of a new and robust bimodal phyllotactic pattern. In a second part, the relation between meristem shape and gene expression was analyzed. More precisely, I correlated the expression of a master regulatory gene: SHOOT MERISTEMLESS (STM) to tissue curvature in the boundary domain that separates the emerging organ from the meristem. Furthermore, I showed that STM expression can be induced by micromechanical perturbations thus suggesting that shape-derived mechanical stresses in the meristem boundary contribute to STM expression. Finally, I also studied how meristem size can influence the robustness of the pattern of phyllotaxis along the stem through a modulation of the frequency of organ initiation. Altogether, this work highlights the important contribution of growth in patterning, notably thanks to the existence of geometrical and mechanical feedbacks.

La pectine, un composant de la matrice de la paroi primaire, joue un rôle dans le contrôle de la porosité de la paroi, l’élongation et l’adhésion cellulaire et est un facteur important dans le développement de la plante. Homogalacturonane (HG), le polymère pectique le plus abondant, est sécrété sous forme méthylestérifiée et ne porte donc peu ou pas de charges négatives. La déméthylestérification d’HG par des pectines méthylestérases (PMEs) expose ensuite des charges négatives et a des conséquences importantes sur les propriétés mécaniques de la paroi, affectant des processus physiologiques et développementaux comme l’ouverture des stomates, l’initiation d’organes et la croissance cellulaire anisotropique. De multiples PME existent (chez Arabidopsis thaliana) qui peuvent être inhibées par des « PME inhibitors » (PMEIs) endogènes. L’HG déméthylestérifiée peut former des liaisons Ca²⁺-pectate qui peuvent rigidifier la paroi, mais des études récentes montrent que la déméthylestérification de HG peut également promouvoir le relâchement de la paroi et l’expansion cellulaire à travers un mécanisme inconnu. Dans ma thèse j’ai adressé ce paradoxe en étudiant le lien entre le métabolisme des pectines, le pH et l’extensibilité de la paroi. À cette fin j’ai développé et utilisé des outils génétiques et pharmacologiques pour la manipulation in vivo de l’activité PME. J’ai généré des lignées permettant la surexpression inductible de deux PMEIs différents, mais qui malheureusement s’avéraient non fonctionnelles. J’ai produit PMEI3 dans une levure ce qui m’a permis de montrer que la protéine a une activité inhibitrice pH-dépendante sur un large éventail de PMEs. Par ailleurs, j’ai utilisé et développé des senseurs ratiométriques pour la mesure du pH à la surface de la cellule. En dehors des senseurs existants, j’ai aussi essayé d’adresser les mêmes biosenseurs à la paroi. À l’aide de ces outils, j’ai ensuite étudié l’impact de la modification de l’activité PME sur le pH et la croissance cellulaire. J’ai pu observer qu’un inhibiteur chimique de la PME, l’(-)-epigallocatechin gallate (EGCG) entraînait une augmentation du pH apoplastique (pHApo) dans la racine, et ceci indépendamment de la H⁺-ATPase ; une inhibition de la croissance et une perte de l’anisotropie des cellules. Par ailleurs, un traitement avec PMEI3 ralentissait la croissance et un apport de PME entraînait une réduction du pHApo et une augmentation de la croissance. Enfin, une induction de 24h de PMEI5 causait une réduction du pHApo, ce qui est en accord avec l’activation compensatoire d’autres PMEs suite à une signalisation liée eux brassinostéroide accrue décrit précédemment. En conclusion, nos résultats suggèrent que la démethylesterification des HG crée domaines anioniques qui peuvent séquestrer des protons ce qui pourrait activer localement des protéines qui stimulent le relâchement de la paroi avec un pH optimum acide entraînant une augmentation de la vitesse de croissance cellulaire. / Pectin, a matrix component in the primary cell wall, plays a role in controlling cell wall porosity, cell elongation and cell adhesion and constitutes an important factor in plant development. The demethylesterification of homogalacturonan (HG), the most abundant pectic polymer, has vast consequences on the mechanical properties of the cell wall, and affects developmental processes such as stomata opening, organ initiation and anisotropic cell growth. HG is selectively demethylesterified in muro by pectin methylesterases (PME), which in turn can be inhibited by endogenous PME inhibitor proteins (PMEIs). Demethylesterified HG is thought to form Ca²⁺-pectate complexes, which contribute to wall stiffening, but recent evidence suggest that it can also promote cell wall loosening and expansion, through a so far unknown mechanism. In this study I addressed this paradox by investigating the link between pectin metabolism, cell wall pH and extensibility. To this end I developed and used genetic and pharmacological tools for the in vivo manipulation of PME activity. I generated inducible overexpression lines for two distinct PMEIs, which unfortunately were not functional. I also produced PMEI3 from Arabidopsis in a yeast and showed that the protein displayed an inhibiting activity on a broad range of PMEs. In addition, I developed and used tools to monitor the cell surface pH. In addition to using existing genetically-encoded ratiometric apoplastic pH sensors, I also tried to generate similar sensors targeted to the cell wall. Using these tools I then studied the impact of changes in pectin methylesterification on the cell wall pH and cell expansion. I discovered that a chemical inhibitor of PME, (-)-epigallocatechin gallate (EGCG), promoted an increase in apoplastic pH (pHApo) in root cells, independently from the inhibition of the H⁺-ATPase, and triggered root growth inhibition and abnormal cell shape. Exogenous PMEI3 application also inhibited root growth. In addition, PME application caused a decrease in pHApo and enhanced root growth. Interestingly, long-term induction of PMEI5 could reduce pHApo, consistent with the previously described activation of brassinosteroid signaling causing a compensatory increase in PME activity. Together, my study provides evidence that HG demethylesterification leads to a decrease in pHApo and an increase in cell growth in the Arabidopsis root. Our results support the view that the negatively charged pectate can sequester protons and thus may contribute to the activation of cell wall loosening proteins and cell growth.

No description available.

In den Pflanzenzellwänden befindliche Polysaccharide stehen dem Prozess nur bedingt als Energiequelle zur Verfügung, da diese in einem Komplex mit Lignin verknüpft sind. Um diese Substanzen für den Biogasprozess verfügbar zu machen und demnach den Substratumsatz bzw. die Prozesseffizienz zu erhöhen, sind geeignete Stoffe oder Techniken einzusetzen bzw. zu entwickeln. In dieser Arbeit wurde zielführend der Einsatz von unterschiedlichen Enzympräparaten in drei verschiedenen Prozessstufen bei ausgewählten Energiepflanzen mit variierender Häcksellänge untersucht. Anhand von Enzymaktivitätsbestimmungen konnten Enzympräparate für die einzelnen Stufen selektiert werden. Die ausgewählten Enzyme wurden einzeln oder in Mischung während der Silierung, direkt vor dem Biogasprozess sowie während des Biogasprozesses zum Substrat dotiert und dieses nach der jeweiligen Vorbehandlung in Batch-Gärtests vergoren. Neben der Biogas- und Methanausbeute wurde zur Bewertung der Enzymleistung der Abbau an Lignocellulose sowie die Freisetzung an niedermolekularen Kohlenhydraten ermittelt. Zusätzlich wurde das Quellen der Lignocellulose mit Hilfe eines Wasserzusatzes in Form einer Vorhydrolyse als Vorbehandlungsmethode mit allgemein positivem Ergebnis geprüft. Das Ziel der verbesserten Substratumsetzung bei Mais und Roggen und folglich einer Erhöhung der Biogasproduktion wurde durch den Zusatz ausgewählter Enzympräparate erreicht. Es konnten Grundlagen bezüglich der Wirkung von Enzymen in Biogasprozessen geschaffen werden, anhand derer deutlich wurde, dass besonders die enzymatische Behandlung in den der Methanisierung vorgelagerten Prozessstufen weiterzuentwickeln ist. / Polysaccharides of plant cell walls are of limited digestibility due to their cross-linking to lignin. In order to make the molecules available for the biogas process and thus increase the substrate utilization and process efficiency appropriate substances or techniques are needed. It was therefore the aim of this work to investigate the effects of different enzyme preparations in three digestion process stages. Selected energy plants with varying degrees of particle sizes (chopping lengths) were used as digester feedstock. Enzyme preparations for the different process stages were chosen by enzyme assays. The selected enzymes were added to the feedstock during the ensiling, directly before the biogas process or during the biogas process separate or in mixtures. Pre-treated substrates were subsequently digested in batch fermentation tests. Beside the biogas and methane yield the degradation degree of lignocellulose and the release of low molecular carbohydrates were investigated for evaluating the enzyme performance. Additionally, the swelling of lignocellulose caused by addition of water in a pre-hydrolysis process was examined as a method of pre-treatment, with generally positive results. The aim of an improved substrate conversion of maize and rye and thus an enhanced biogas production by enzymatic pretreatments was achieved. Scientific fundamentals regarding the impact of enzymes on biogas processes were established. Enzymatic pretreatments in process steps before methanation showed potential for further developments.

La composition des cellulosomes (complexes multi-enzymatiques impliqués dans la dégradation des polysaccharides de la paroi végétale) produits par Clostridium cellulolyticum varie en fonction du substrat de croissance. En particulier, l’expression d’un regroupement de 14 gènes prédits comme codants pour des hémicellulases (appelés xyl-doc) est induite par la présence de paille et non de cellulose. L’hypothèse a été faite que le système à deux composants putatif, codé par les deux gènes en amont des gènes xyl-doc, est impliqué dans cette régulation. Mes résultats montrent que le régulateur de réponse (appelé XydR) est impliqué dans l’activation de la transcription des gènes xyl-doc et d’un gène additionnel codant pour une protéine de fonction inconnue. Cette protéine possède cependant un module de liaison aux sucres prédit comme ciblant les hémicelluloses. Les régions promotrices, incluant les sites potentiels de liaison de XydR, ont été identifiées en amont des gènes régulés et un lien transcriptionnel entre tous les gènes xyl-doc a été mis en évidence.Un deuxième objectif de mon travail a été d’identifier le signal inducteur présent dans la paille susceptible d’être capté par le senseur apparenté à XydR. Il a été montré que la transcription des gènes cibles est spécifiquement induite par l’arabinose et le xylose qui sont les résidus glucidiques les plus abondants dans les hémicelluloses et donc relargués lors de leur dégradation.Finalement, des études biochimiques des produits de certains des gènes régulés ont montré qu’au moins trois des gènes codaient pour des produits impliqués dans la dégradation des hémicelluloses. / The composition of the cellulosomes (multi enzymatic complexes involved in the degradation of plant cell wall polysaccharides) produced by Clostridium cellulolyticum differs according to the growth substrate. In particular, the expression of a cluster of 14 hemicellulase-encoding genes (called xyl-doc) is induced by the presence of straw and not of cellulose. The hypothesis was made that the putative two-component regulatory system, encoded by the genes localized upstream of xyl-doc, was involved in this regulation.My results provided evidence that the response regulator (called XydR) is involved in the activation of the transcription of xyl-doc genes and of an additional gene encoding a protein of unknown function harboring a carbohydrate binding module predicted to target hemicelluloses. Promoter regions, including XydR binding sites, have been identified upstream of the regulated genes and the transcriptional link between all xyl-doc genes has been demonstrated. A second aim of my work has been to identify the inducing signal present in straw that could be sensed by the cognate sensor of XydR. It was shown that the transcription of the target genes is specifically induced by arabinose and xylose which are the most abundant sugar residues present in hemicellulose and thus released by its degradation.Finally, biochemical studies of the products of some of the regulated genes demonstrated that at least three genes encoded products involved in hemicellullose degradation.

The cell wall provides a complex and rigid structure to the plant for support, protection from environmental factors, and transport. It is mainly composed of polysaccharides, proteins, and lignin. Arabinoxylan (AX), pectin (P), and cellulose (C) are the main components of cereal cell walls and are particularly concentrated in the bran portion of the grain. Cereal arabinoxylans create networks in plant cell walls in which other cell wall polysaccharides are imbedded forming complex matrices. These networks give an insolubility profile to plant cell wall. A previous study in our lab showed that soluble crosslinked arabinoxylan with relatively high residual ferulic acid from corn bran provided advantageous <i>in vitro </i>human fecal fermentation products and promoted butyrogenic gut bacteria. In the present work, arabinoxylan was isolated from corn bran with a mild sodium hydroxide concentration to keep most of its ferulic acid content. Highly ferulated corn bran arabinoxylan was crosslinked to create an insoluble network to mimic the cereal grain cell wall matrices. Firstly, arabinoxylan film (Cax-F), pectin film (P-F), the film produced by embedding pectin into arabinoxylan networks (CaxP-F), and cellulose embedding arabinoxylan matrices (CaxC-F), and embedding the mixture of cellulose and pectin into arabinoxylan networks (CaxCP-F) were fabricated into simulated plant cell wall materials. Water solubility of films in terms of monosaccharide content was examined and revealed that Cax-F was insoluble, and P-F was partially insoluble, and nanosized pectin and cellulose were partially entrapped inside the crosslinked-arabinoxylan matrices. In a further study, these films were used in an <i>in vitro </i>human fecal fermentation assay to understand how gut microbiota access and utilize the different simulated plant cell walls to highlight the role of each plant cell wall component during colonic fermentation. <i>In vitro </i>fecal samples, obtained from three healthy donors were used to ferment the films (Cax-F, P-F, CaxP-F, CaxC-F, and CaxCP-F) and controls (free form of cell wall components -Cax, P and C). The fabricated films that were compositionally similar to cell walls were fermented more slowly than the free polysaccharides (Cax and P). Besides, CaxP-F produced the highest short chain fatty acids (SCFA) amount among the films after 24 hour <i>in vitro </i>fecal fermentation. Regarding specific SCFA, butyrate molar ratio of all films was significantly higher than the free, soluble Cax and P. 16S rRNA gene sequencing explained the differences of the butyrate proportion derived from specific butyrogenic bacteria. Particularly, some bacteria, especially in a butyrogenic genera from Clostridium cluster XIVa, were increased in arabinoxylan films forms compared to the native free arabinoxylan polysaccharide. However, no changes were observed between P and P-F in terms of both end products (SCFA) and microbiota compositions. Moreover, CaxP-F promoted the butyrogenic bacteria in fecal samples compared with pectin alone, arabinoxylan alone, and the arabinoxylan film. Differences in matrix insolubility of the film, which was high for the covalently linked arabinoxylan films, but low for the non-covalent ionic-linked pectin film, appears to play an important role in targeting Clostridial bacterial groups. Overall, the cell wall-like films were useful to understand which bacteria degrade them related to their physical form and location of the fiber polymers. This study showed how fabricated model plant cell wall films influence specificity and competitiveness of some gut bacteria and suggest that fabricated materials using natural fibers might be used for targeted support of certain gut bacteria and bacterial groups.

No description available.