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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
121

Distribuição do colágeno tipo I, colágeno tipo III e versican na lâmina própria da prega vocal humana de fetos e adultos: método histoquímico e imunoistoquímico / Collagen type I, collagen type III and versican distribution within the lamina propria of fetal and adult human vocal fold : histochemical and immunohistochemical method

Buhler, Rogerio Borghi 22 October 2008 (has links)
A matriz extracelular apresenta importante papel na fisiologia da fonação sendo necessário o conhecimento de seus componentes. Poucos estudos sobre os componentes da matriz em fetos e a ausência de relatos do versican nesta faixa etária, bem como a necessidade de aprofundar os conhecimentos sobre os componentes da matriz em adultos, resultaram na elaboração deste estudo. Analisar a presença e distribuição do colágeno tipo I, colágeno tipo III e proteoglicano versican na lâmina própria da prega vocal de laringes fetais e adultas é o objetivo do estudo. No grupo fetal foram estudadas 7 laringes obtidas de cadáveres variando de 28 a 36 semanas de idade gestacional. No grupo adulto foram estudadas 20 laringes, 10 do sexo masculino, com média de idade de 66 anos, e 10 do sexo feminino com média de idade de 70 anos, com idades pareadas. Utilizou-se método imunoistoquímico para avaliar a expressão do versican no grupo fetal e adulto. Para a avaliação das fibras colágenas utilizou-se o método da Picrosirius polarização no grupo fetal e imunoistoquímico no grupo adulto. A quantificação das fibras colágenas e do versican foi realizada por meio de análise digital de imagens. Os resultados do grupo fetal mostraram uma distribuição homogênea das fibras colágenas formando uma estrutura monolaminar com um entrelaçamento entre as fibras denominado arranjo em cesta de vime; em relação ao versican, este apresentou uma densidade maior na camada superficial e intermediária da lâmina própria. Os resultados do grupo adulto mostraram uma menor densidade de colágeno tipo I na camada intermediária quando comparado à camada superficial (p<0.001) e camada profunda (p=0.005). O colágeno tipo III apresentou distribuição mais homogênea nas camadas da lâmina própria, com uma densidade estatisticamente menor na camada intermediária quando comparada à camada profunda (p=0.001), mas sem diferença estatística na camada superficial. O versican apresentou densidade menor na camada superficial quando comparado à camada intermediária (p=0.036) e camada profunda (p=0.013). Houve menor densidade de versican nas mulheres quando comparado aos homens, percebida apenas na camada superficial. Quando todas as camadas foram consideradas conjuntamente houve uma correlação positiva entre a densidade de versican e colágeno tipo III (r=0.57; p=0.010). Este estudo mostrou as diferenças na distribuição dos componentes da matriz nas camadas da lâmina própria em dois grupos etários proporcionando uma discussão sobre as implicações destes achados na fisiologia vocal e sugerindo que as estruturas glóticas já estariam preparadas para a vocalização ao nascimento / Extracellular matrix has an important rule in the vocal fold physiology and the knowledge about your components is necessary. Fewer studies about matrix extracellular and no studies about versican in fetuses, and the necessity to improve the knowledge about extracellular matrix components in adults group came us to the elaboration of this study that has the objective to analyze the presence and distribution of collagen type I, type III and versican in human vocal fold lamina propria of fetal and adult larynges. Seven fetal larynges obtained from 28- to 36- week-old cadaveric fetuses were studied. Twenty larynges were obtained from adults (10 males and 10 females). Mean age of males was 66 and 70 from females, without significant statistical difference between groups. For the analysis of versican expression, immunohistochemical reactions were carried out in fetal and adult group. The larynges were analyzed through Picrosirius polarization method and immunohistochemistry to visualize the collagen fibers, in fetal and adult group respectively. Collagen fibers and proteoglycan were quantified using a digital image analysis system. In fetuses, the collagen fibers system exhibited homogeneous distribution pattern in a monolaminar layer and spatial arrangement as in a wicker basket; predominance of versican distribution was found out on the superficial and intermediate layer of vocal fold lamina propria. In adult group, there was a lower collagen type I density in the intermediate layer when compared to the superficial (p<0.001) and the deep layers (p=0.005). Collagen type III presented a lower density in the intermediate layer when compared to the deep layer (p=0.001) but without differences in the superficial layer. There was a lower versican density in the superficial layer when compared to the intermediate layer (p=0.036) and deep layer (p=0.013). There was a lower versican density in the lamina propria of females when compared with males. The difference was noted in the superficial layer only. When all layers are considered together there was a positive correlation between versican and collagen type III densities (r=0.57; p=0.010). This study shows the differences in the extracellular matrix components distribution in lamina propria vocal folds in fetal and adult group permitting a discussion about the implications in vocal fold physiology and suggesting that laryngeal structures will be prepared to vocalization at birth
122

Estudo histológico da matriz extracelular do músculo cricofaríngeo em cadáveres de diferentes idades / Histological study of extracellular matrix of cricopharyngeus muscle in different ages

Raquel Aguiar Tavares 07 October 2009 (has links)
O músculo cricofaríngeo desempenha um importante papel na deglutição. Acredita-se que seu comportamento elástico seja dependente não apenas do componente muscular, mas também do tecido conectivo intramuscular. O objetivo desse estudo foi analisar a presença e a distribuição do colágeno total, colágenos tipo I e III, fibras elásticas, fibronectina e versican no endomísio do músculo cricofaríngeo em cadáveres de diferentes idades. Vinte e sete músculos foram obtidos mediante autópsia de indivíduos de ambos os sexos com idades entre 28 e 92 anos. Foram realizadas colorações histoquímicas, Método Picrossírius e Método Resorcina-fuccina com oxidação prévia pela oxona, e imunoistoquímicas, para colágeno tipo I, tipo III, fibronectina e versican. A medida dos elementos estudados foi feita por meio de um sistema de análise de imagens que incluía um microscópio, conectado a um computador por meio de uma câmera de vídeo. Foi utilizado o software Image pro Plus, versão 4.1. Para cada caso, quinze imagens não sobrepostas de cada coloração no aumento de 400x foram analisadas. A área de marcação positiva dentro do endomísio do músculo cricofaríngeo foi determinada por um padrão de cor específico para cada coloração. A área de cada elemento da matriz extracelular foi expressa como porcentagem da área total do estudada. Os dados foram expressos em medianas e intervalos interquartílicos. A correlação entre idade e os diferentes elementos da matriz extracelular foi realizada por meio da correlação de Spearman. O teste de Mann-Whitney para distribuição não paramétrica foi utilizado para comparar as áreas porcentuais e os indivíduos de diferente sexo. Todos os testes foram realizados pelo software SPPS versão 13.0 e foi admitido um calor de significância com p < 0,05. O colágeno foi o elemento mais abundante dentre os estudados. Encontrou-se fibras elásticas longitudinais à fibra muscular, finas fibras transversais entre as fibras musculares e espessamento as fibras elásticas nos pólos da fibra muscular. Foi encontrada uma grande variação no conteúdo de fibronectina e versican entre os casos. Não foi evidenciada diferença estatisticamente significativa entre os elementos estudados, o sexo e a idade. Os resultados sugerem que a presença e distribuição desses elementos são importantes para a função do músculo cricofaríngeo e para a manutenção da homeostase. A porcentagem de colágeno encontrada é condizente com a característica esfinctérica do músculo e o arranjo de fibras elásticas contribui para o comportamento elástico e a capacidade de rapidamente reassumir a posição tônica após a abertura durante as deglutições. As variações da quantidade de fibronectina e versican, podem ser resultante da susceptibilidade a fatores agressores. A ausência de alterações com a idade pode significar que o músculo não esteja sujeito às mesmas alterações decorrentes da idade que outros músculos esqueléticos / The cricopharyngeus muscle is thought to play an important role in swallowing and related activities. Its elastic behavior is likely to depend not only on its muscular components, but also on the intramuscular connective tissue. Our objective is to analyze the presence and distribution of total collagen, type I and III collagen, elastic fibers, fibronectin and versican in cricopharyngeus muscle endomysium in adults of a wide age range. Twenty-seven cricopharyngeus muscles obtained from male and female cadavers (age range, 28-92 years-old) were analyzed with the Picrosirius method, oxidized Weigert resorcin-fuchisin, immunohistochemistry. Quantification of stained areas in the cricopharyngeus endomysium with different techniques was performed by an image analysis system connected to a light microscope. The correlation between age and the density of different extracellular matrix proteins was tested using Spearman test. T-tests for independent samples were used to analyze the influence of gender and smoking habit on the fractional areas of extracellular matrix. Collagens had the highest density among the analyzed components. Elastic fibers surrounded each muscle cell, longitudinal to their long axis, associated to traversing fibers, forming a fiber network embedding muscle cells. There was a wide variation on fibronectin and versican content among cases. There were no statistical significance for analysis made between those components of extracellular matrix and age andgender. Our findings suggest that presence and distribution of these extracellular matrix components are important to cricopharyngeus muscle homeostasis. The elastic fibers arrangement can contribute for the cricopharyngeus muscle elastic behavior and ability to rapidly reassume its tonic position after opening during swallows. Variations in the expression of fibronectin and versican can beresultant of its injury susceptibility. The absence of changes on extracellular components during aging could mean that cricopharyngeus muscle is not susceptible to similar age changes as other skeletal muscles
123

Interações celulares em ambiente tridimensional entre células híbridas dendríticas-tumorais e linfócitos humanos: em busca de estratégias de aprimoramento de vacina antitumoral. / Cell interactions in three-dimensional environment between dendritic cell-tumor hybrid cells and human lymphocytes: looking for antitumor vaccine enhancement strategies.

Cruz, Karen Steponavicius Piedade 30 July 2015 (has links)
Células híbridas dendríticas-tumorais vem sendo usadas em vacinas terapêuticas contra o câncer e tem mostrado resultados promissores, porém seu comportamento e funções são insuficientemente conhecidos. O presente trabalho pretende estudar a interação dessas células híbridas com diferentes subpopulações de linfócitos T em um ambiente 3D com colágeno tipo III. Nossos resultados indicaram que as células híbridas do grupo Fusão Tumoral interagiram tanto com linfócitos CD4 quanto com CD8. Linfócitos CD4 interagiram 2 vezes mais no grupo Fusão Linhagem do que nos outros grupos e sua interação foi de apenas com um único linfócito. Linfócitos CD8 do grupo Fusão Tumoral interagiram mais tempo quando comparado aos outros grupos. Não foi observada IL-2 na culturas onde as células híbridas estavam presentes e a proliferação de linfócitos no grupo Fusão Tumoral também não foi observada. Assim, a cocultura 3D foi capaz de demonstrar a importância de um protocolo personalizado para cada tipo de tumor, levando em consideração as características únicas de cada tumor. / Dendritic cell-tumor cell hybrids have been used in therapeutic vaccines against cancer and has shown promising results, but their behavior and functions are insufficiently known. In this context, this study aims the interaction of these hybrid cells with different subpopulations of T cells in a 3D environment with collagen type III. Our results indicated that cells in Tumor Fusion group interacted with both CD4 and CD8 T lymphocytes. CD4 lymphocytes interacted 2 times more in the SKBR-3 Fusion group than another groups and their interaction was only with a single lymphocyte. CD8 lymphocytes interaction with the Tumor Fusion group resulted in longer interactions when in comparison with the another groups. No IL-2 was observed in cultures where the hybrid cells were present and the proliferation of lymphocytes in Tumor Fusion group was not observed. Thus, the 3D co-culture was able to demonstrate the importance of a custom protocol for each type of tumor, taking into consideration the unique characteristics of each one.
124

Thermal History and Deep Overpressure Modelling in the Northern Carnarvon Basin, North West Shelf, Australia

He, Sheng January 2002 (has links)
The Northern Carnarvon Basin is the richest petroleum province in Australia. About 50 gas/condensate and oil fields, associated mainly with Jurassic source rocks, have been discovered in the sub-basins and on the Rankin Platform since 1964. The basin is located at the southern end of the North West Shelf of Australia. It can be mainly subdivided into the Exmouth, Barrow, Dampier and Beagle Sub-basins, the Rankin Platform and Exmouth Plateau. The sub-basins are rift-related grabens and half-grabens developed during the Jurassic to the earliest Cretaceous and contain over 10 kilometres of Mesozoic and Cainozoic sedimentary rocks, among which are several thousand meters of Jurassic rocks. The formations of the Jurassic and the lower part of the Barrow Group of Early Cretaceous age in the sub-basins of the Northern Carnarvon Basin were found to be overpressured with excess pressures of 5-29 MPa at depths of 2900-3600 m indicated by repeat formation tests (RFTs) and drill stem tests (DSTs). The characteristics of organic matter, thermal history and thermal maturity, pressure seal and overpressure evolution in the sub-basins are crucial to a proper understanding of the nature and dynamic processes of hydrocarbon generation and migration in the basin. Based on organic geochemical data, the important source rocks in the basin are Jurassic organic-rich fine-grained rocks including the Murat Siltstone, the rift-related Athol Formation and Dingo Claystone. The Mungaroo Formation of the Middle-Upper Triassic contains gas-generating source rocks. These formations recognised to be organic rich based on 1256 values of the total organic carbon content (TOC, %) from 17 wells. Average TOC values (calculated from samples with TOC < 15 %) are about 2.19 % in the Mungaroo Formation, about 2.09 % in the Murat Siltstone and about 1.74 % in the Athol Formation and Dingo Claystone. / Data from kerogen element analysis, Rock-Eval pyrolysis, visual kerogen composition and some biomarkers have been used to evaluate the kerogen type in the basin. It appears that type III kerogen is the dominant organic-matter type in the Triassic and Jurassic source rocks, while the Dingo Claystone may contain some oil-prone organic matter. The vitrinite reflectance (Ro) data in some wells of the Northern Carnarvon Basin are anomalously low. As a major thermal maturity indicator, the anomalously low Ro data seriously hinder the assessment of thermal maturity in the basin. This study differs from other studies in that it has paid more attention to Rock-Eval Tmax data. Therefore, problems affecting Tmax data in evaluating thermal maturity were investigated. A case study of contaminated Rock-Eval data in Bambra-2 and thermal modelling using Tmax data in 16 wells from different tectonic subdivisions were carried out. The major problems for using Tmax data were found to be contamination by drilling-mud additives, natural bitumen and suppression due to hydrogen index (HI) > 150 in some wells. Although the data reveal uncertainties and there is about ±3-10 % error for thermal modelling by using the proposed relationship of Ro and Tmax, the "reliable" Tmax data are found to be important, and useful to assess thermal maturity and reduce the influence of unexpectedly low Ro data. / This study analyzed the characteristics of deep overpressured zones and top pressure seals, in detail, in 7 wells based on the observed fluid pressure data and petrophysical data. The deep overpressured system (depth greater than 2650-3000 m) in the Jurassic formations and the lower part of the Barrow Group is shown by the measured fluid pressure data including RFTs, DSTs and mud weights. The highly overpressured Jurassic fine-grained rocks also exhibit well-log responses of high sonic transit times and low formation resistivities. The deep overpressured zone, however, may not necessarily be caused by anomalously high porosities due to undercompaction. The porosities in the deep overpressured Jurassic rocks may be significantly less than the well-log derived porosities, which may indicate that the sonic-log and resistivity-log also directly respond to the overpressuring in the deep overpressured fine-grained rocks of the sub-basins. Based on the profiles of fluid pressure and well-log data in 5 wells of the Barrow Sub-basin, a top pressure seal was interpreted to be consistent with the transitional pressure zone in the Barrow Sub-basin. This top pressure seal was observed to consist of a rock layer of 60-80 % claystone and siltstone. The depths of the rock layer range from 2650 m to 3300 m with thicknesses of 300-500 m and temperatures of 110-135 °C. Based on the well-log data, measured porosity and sandstone diagenesis, the rock layer seems to be well compacted and cemented with a porosity range of about 2-5 % and calculated permeabilities of about 10-19 to 10-22 M2. / This study performed thermal history and maturity modelling in 14 wells using the BasinMod 1D software. It was found that the thermal maturity data in 4 wells are consistent with the maturity curves predicted by the rifting heat flow history associated with the tectonic regime of this basin. The maximum heat flows during the rift event of the Jurassic and earliest Cretaceous possibly ranged from 60-70 mW/m2 along the sub-basins and 70-80 mW/m2 on the southern and central Exmouth Plateau. This study also carried out two case studies of thermal maturity and thermal modelling within the deep overpressured system in the Barrow and Bambra wells of the Barrow Sub-basin. These case studies were aimed at understanding whether overpressure has a determinable influence on thermal maturation in this region. It was found that there is no evidence for overpressure-related retardation of thermal maturity in the deep overpressured system, based on the measured maturity, biomarker maturity parameters and 1D thermal modelling. Therefore, based on the data analysed, overpressure is an insignificant factor in thermal maturity and h hydrocarbon generation in this basin. / Three seismic lines in the Exmouth, Barrow and Dampier Sub-basins were selected and converted to depth cross-sections, and then 2D geological models were created for overpressure evolution modelling. A major object of these 2D geological models was to define the critical faults. A top pressure seal was also detected based on the 2D model of the Barrow Sub-basin. Two-dimensional overpressure modelling was performed using the BasinMod 2D software. The mathematical 2D model takes into consideration compaction, fluid thermal expansion, pressure produced by hydrocarbon generation and quartz cementation. The sealed overpressured conditions can be modelled with fault sealing, bottom pressure seal (permeabilities of 10-23 to 10-25 M2 ) and top pressure seal (permeabilities of 10-19 to 10-22 m2). The modelling supports the development of a top pressure seal with quartz cementation. The 2D modelling suggests the rapid sedimentation rates can cause compaction disequilibrium in the fine-grained rocks, which may be a mechanism for overpressure generation during the Jurassic to the Early Cretaceous. The data suggest that the present-day deep overpressure is not associated with the porosity anomaly due to compaction disequilibrium and that compaction may be much less important than recurrent pressure charges because most of the porosity in the Jurassic source rocks has been lost through compaction and deposition rates have been very slow since the beginning of the Cainozoic. / Three simple 1D models were developed and applied to estimate how rapidly the overpressure dissipates. The results suggest that the present day overpressure would be almost dissipated after 2 million years with a pressure seal with an average permeability of 10-22 M2 (10-7 md). On the basis of numerous accumulations of oil and gas to be expelled from the overpressured Jurassic source rocks in the basin and the pressure seal modelling, it seems that the top pressure seal with permeabilities of 10-19 to 10-22 M2 (10-4 to 10-7 md) is not enough to retain the deep overpressure for tens of millions of years without pressure recharging. Only if the permeabilities were 10-23 m2 (10-8 md) or less, would a long-lived overpressured system be preserved. This study suggests that hydrocarbon generation, especially gas generation and thermal expansion, within sealed conditions of low-permeability is a likely major cause for maintaining the deep overpressure over the past tens of millions of years. Keywords: Thermal history; Deep overpressure; Type III kerogen; Rock-Eval Tmax; Thermal maturity; Palaeoheatflow modelling; Pressure seal; 2D deep overpressure modelling; Pressure behaviour modelling; Overpressure generation; Northern Carnarvon Basin.
125

ROLE DE L'EXOENZYME S DE PSEUDOMONAS AERUGINOSA DANS LA VIRULENCE BACTERIENNE : ETUDE FONCTIONNELLE DU DOMAINE GAP ET DE SES CIBLES SUR LA REPONSE IMMUNITAIRE CHEZ DROSOPHILA MELANOGASTER

Avet-Rochex, Amélie 03 October 2005 (has links) (PDF)
L'exoenzyme S, une toxine de type III, de Pseudomonas aeruginosa possède un domaine GAP (GTPase Activating Protein) (ExoSGAP) inhibant les Rho GTPases (Rho, Rac, Cdc42) et la phagocytose dans les cellules de Mammifères en culture. J'ai utilisé une approche de transgenèse chez Drosophila melanogaster en utilisant un système d'expression tissu-spécifique inductible (UAS-Gal4) afin d'exprimer ExoSGAP. Nous avons montré qu'ExoSGAP cible in vivo les Rho GTPases Rho, Rac1, Rac2 et Cdc42. ExoSGAP affecte la résistance des mouches aux infections en inhibant la phagocytose des bactéries par les plasmatocytes, des cellules de type macrophage, mais n'a pas d'effet sur les voies NF-kB. Une approche génétique a permis d'identifier de nouvelles cibles de la toxine, en recherchant des gènes dont la dérégulation modifie le phénotype d'œil ou d'aile induit par l'expression d'ExoSGAP. Nous avons identifié plusieurs gènes pouvant avoir un rôle dans les voies des JNK et NF-kB Ces résultats valident une stratégie d'étude des toxines de type III par transgenèse chez la drosophile.J'ai parallèlement montré la spécificité de la GTPase Rac2 dans la résistance des mouches aux infections bactériennes. Rac2 participe notamment à la phagocytose.<br />Les travaux du Dr. H. Tricoire ont permis d'identifier 180 gènes dont la dérégulation modifie la réponse des mouches à un stress oxydant. J'ai testé 105 de ces lignées pour leur résistance aux infections, afin d'étudier une corrélation possible entre la réponse aux stress oxydant et infectieux. Ce crible a permis de montrer l'implication d'une protéine à domaine lectine PSLR (Pseudomonas Sensitive Lectin Receptor) dans la réponse immunitaire de la drosophile.
126

Caractérisation fonctionnelle et mécanisme de l'inhibition de ExsA, régulateur clef du Système de Sécrétion de Type III de Pseudomonas aeruginosa.

Thibault, Julie 08 January 2010 (has links) (PDF)
L'expression des gènes codant pour le Système de Sécrétion de Type III (SST3), facteur de virulence majeur de Pseudomonas aeruginosa, est activée par ExsA. Ce facteur de transcription appartient à la famille des régulateurs de type AraC/XylS caractérisés par un domaine de fixation à l'ADN comportant deux motifs hélice-tour-hélice. L'activité de ces protéines est généralement régulée par la fixation d'un ligand sur un domaine supplémentaire non conservé. Ce ligand peut être de nature protéique dans le cas de certains régulateurs contrôlant la synthèse de SST3. Ainsi, l'activité transcriptionnelle de ExsA est inhibée par l'anti-activateur ExsD. L'étude de la fonctionnalité de ExsA et de ses domaines par des approches in vitro et in vivo a révélé que le domaine C-terminal de ExsA est bien le domaine de fixation à l'ADN et que deux monomères se fixent sur le promoteur de l'opéron des gènes de régulation du SST3 (pC). Ce domaine isolé possède une affinité pour pC et une activité transcriptionelle inférieure à celle de ExsA. En effet, la fixation efficace de ExsA sur le promoteur pC requiert sa dimérisation à travers son domaine N-terminal. La dernière hélice  de ce domaine N-ter semble jouer un rôle majeur dans la dimérisation de ExsA. Le deuxième objectif de ma thèse était de comprendre l'interaction entre ExsA et ExsD et d'identifier le mécanisme grâce auquel l'inhibiteur empêche ExsA d'activer la transcription des gènes du SST3. Après co-production des deux protéines, le complexe ExsA/ExsD a été purifié puis caractérisé. ExsA et ExsD forment un complexe hétérodimérique au sein duquel l'inhibiteur empêche le facteur de transcription de se fixer à l'ADN.
127

Virulence mechanisms of pathogenic Yersinia : aspects of type III secretion and twin arginine translocation

Lavander, Moa January 2005 (has links)
<p>The pathogenic bacteria Yersinia pestis and Y. pseudotuberculosis are related to the degree where the former is considered a subspecies of the latter, and still they cause disease of little resemblance in humans. Y. pestis is the causative agent of lethal bubonic and pneumonic plague, while Y. pseudotuberculosis manifests itself as mild gastroenteritis. An important virulence determinant for these species is their ability to secrete and inject toxins (Yop effectors) into immune cells of the infected host, in a bacterium-cell contact dependent manner. This ability depends on the extensively studied type III secretion system, a highly complex multicomponent structure resembling a needle. The induction of Yop secretion is a strictly controlled event. The two structural type III secretion components YscU and YscP are here shown to play a crucial role in this process, which is suggested to require an YscP mediated conformational change of the C-terminus of YscU. Proteolytic cleavage of YscU within this domain is further revealed to be a prerequisite for functional Yop secretion. The needle subcomponent itself, YscF, is recognised as a regulatory element that controls the induction of Yop effectors and their polarised delivery into target cells. Potentially, the needle might act as a sensor that transmits the inducing signal (i.e. target cell contact) to activate the type III secretion system. Secondly a, for Yersinia, previously unexplored system, the Twin arginine translocation (Tat) pathway, is shown to be functional and absolutely required for virulence of Y. pseudotuberculosis. A range of putative Yersinia Tat substrates were predicted in silico, which together with the Tat system itself may be interesting targets for future development of antimicrobial treatments.</p>
128

Virulence mechanisms of pathogenic Yersinia : aspects of type III secretion and twin arginine translocation

Lavander, Moa January 2005 (has links)
The pathogenic bacteria Yersinia pestis and Y. pseudotuberculosis are related to the degree where the former is considered a subspecies of the latter, and still they cause disease of little resemblance in humans. Y. pestis is the causative agent of lethal bubonic and pneumonic plague, while Y. pseudotuberculosis manifests itself as mild gastroenteritis. An important virulence determinant for these species is their ability to secrete and inject toxins (Yop effectors) into immune cells of the infected host, in a bacterium-cell contact dependent manner. This ability depends on the extensively studied type III secretion system, a highly complex multicomponent structure resembling a needle. The induction of Yop secretion is a strictly controlled event. The two structural type III secretion components YscU and YscP are here shown to play a crucial role in this process, which is suggested to require an YscP mediated conformational change of the C-terminus of YscU. Proteolytic cleavage of YscU within this domain is further revealed to be a prerequisite for functional Yop secretion. The needle subcomponent itself, YscF, is recognised as a regulatory element that controls the induction of Yop effectors and their polarised delivery into target cells. Potentially, the needle might act as a sensor that transmits the inducing signal (i.e. target cell contact) to activate the type III secretion system. Secondly a, for Yersinia, previously unexplored system, the Twin arginine translocation (Tat) pathway, is shown to be functional and absolutely required for virulence of Y. pseudotuberculosis. A range of putative Yersinia Tat substrates were predicted in silico, which together with the Tat system itself may be interesting targets for future development of antimicrobial treatments.
129

Type III Secretion Mediated Translocation of Effector Exoenzymes by Pseudomonas aeruginosa / Injektion av gifter via typ III sekretionssystemet hos bakterien Pseudomonas aeruginosa

Sundin, Charlotta January 2003 (has links)
No description available.
130

Molekularbiologische Charakterisierung Shiga Toxin 1-konvertierender Bakteriophagen und des phagenkodierten Typ III Effektorproteins NleA4795

Creuzburg, Kristina 08 June 2007 (has links) (PDF)
Shiga Toxin (Stx)-konvertierende Bakteriophagen besitzen eine konservierte lambdo-ide Genomstruktur, weisen aber ein hohes Maß an genetischer Diversität auf. Aus diesem Grund wurden die bereits vorhandenen Sequenzdaten der Stx1-Phagen CP-1639 des Escherichia coli O111:H- Stammes 1639/77 und BP-4795 des E. coli O84:H4 Stammes 4795/97 vervollständigt und analysiert. Im Gegensatz zu dem induzierbaren Bakteriophagen BP-4795 fehlen CP-1639 einige Gene, die für den lytischen Lebenszyklus eines Bakteriophagen notwendig sind. Daher handelt es sich bei CP-1639 um einen kryptischen Prophagen, der nicht mehr in der Lage ist das Wirtschromosom zu verlassen und intakte Phagenpartikel zu bilden. Die Integra-tionsstellen wurden innerhalb des Gens yehV für BP-4795 und ssrA für CP-1639 bestimmt. In unmittelbarer Umgebung des Integrationsortes von CP-1639 befindet sich ein eigenständiges integratives Element. Dieses besteht aus drei offenen Lese-rahmen unbekannter Herkunft, sowie einem Integrasegen und kann auch ohne Assoziation mit Phagen-DNA auftreten. Phagen können zusätzlich zu ihrem Genom Gene bakteriellen Ursprungs tragen. Diese können unter anderem infolge von Transpositionen oder einer unkorrekten Exzision der Phagen-DNA aus dem Wirtschromosom während des lytischen Lebenszyklus in das betreffende Phagengenom eingebaut werden. Eines solches Gen des Bakteriophagen BP-4795 kodiert das Typ III Effektorprotein NleA4795, dessen Funktionalität nach dem C-terminalen Einbau von neun Codons des Hämagglutinin (HA)-Epitopes des humanen Influenzavirus in die Sequenz des Gens nleA4795 überprüft wurde. Dies erfolgte unter Verwendung der Western Blot Analyse durch die Expression dieses Fusionsproteins in dem Wildtyp-Stamm 4795/97 und in der Deletionsmutante 4795escN des Stammes 4795/97. Die Typ III Sekretionssys-tem (T3SS)-inaktive Mutante 4795escN wurde im Verlauf dieser Arbeit hergestellt. Diese Untersuchungen zeigten ebenfalls, dass zur Sekretion von NleA4795 ein in-taktes T3SS notwendig ist. Weiterhin zeigte die Infektion einer HeLa-Zelllinie mit NleA4795-HA exprimierenden Bakterienstämmen und die anschließende Analyse mit Hilfe der Immunfluoreszenz, die Translokation des Proteins in eukaryotische Wirts-zellen. Darüber hinaus deuten die Ergebnisse dieser Untersuchung auf eine Lokali-sation von NleA4795-HA innerhalb des Trans-Golgi Netzwerkes hin. Die Verbreitung des Gens nleA wurde in insgesamt 170 Shiga Toxin-produzierenden E. coli und enteropathogenen E. coli Stämmen untersucht. Dies führte zur Identifika-tion von 14 verschiedenen Varianten des Gens nleA in 149 der überprüften Stämme, wobei mit Ausnahme von zwei Isolaten ebenfalls ein Markergen des T3SS nachge-wiesen werden konnte. Neben drei bereits bekannten Varianten konnten elf neue Varianten identifiziert werden, deren abgeleitete Aminosäuresequenzen sich zu 71% bis 96% glichen. Sequenzunterschiede traten insbesondere aufgrund der Deletion oder Insertion von vier bis 51 Aminosäuren im Mittelteil der potentiellen Proteine auf. Weiterhin deuten die Ergebnisse dieser Untersuchungen eine Assoziation bestimm-ter Varianten des Gens nleA mit spezifischen E. coli Serogruppen an. Southern-Blot Hybridisierungen zeigten, dass etwa ein Viertel der nleA-positiven Stämme zwei Ko-pien dieses Gens in ihrem Genom tragen. Hierbei handelt es sich meist um zwei verschiedene Varianten. In fast allen Fällen kodiert eine dieser Varianten, aufgrund einer Punktmutation oder Insertion eines IS-Elementes, ein verkürztes und vermut-lich nicht funktionelles Protein. Mit Hilfe von Transduktionsexperimenten konnten verschiedene Varianten des Gens nleA im Genom induzierbarer Phagen nachge-wiesen werden, was auf eine Verbreitung des Gens nleA durch den horizontalen Gentransfer hinweist.

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