This thesis is devoted to designing and applying advanced algorithmical and statistical tools for analysis of NGS data related to cancer and infection diseases. NGS data under investigation are obtained either from host samples or viral variants. Recently, random peptide phage display libraries (RPPDL) were applied to studies of host's antibody response to different diseases. We study human antibody response to breast cancer and mouse antibody response to Lyme disease by sequencing of the whole antibody repertoire profiles which are represented by RPPDL. Alternatively, instead of sequencing immune response NGS can be applied directly to a viral population within an infected host. Specifically, we analyze the following RNA viruses: the human immunodeficiency virus (HIV) and the infectious bronchitis virus (IBV). Sequencing of RNA viruses is challenging because there are many variants inside population due to high mutation rate. Our results show that NGS helps to understand RNA viruses and explore their interaction with infected hosts. NGS also helps to analyze immune response to different diseases, trace changing of immune response at different disease stages.

Standard purification processes in large scale antibody production are largely dependent on Protein A chromatography. Protein A binds specifically to many subclasses of IgG with high affinity. However, in order to elute the proteins, the pH needs to be lowered. Since lowering of the pH can be detrimental to some antibodies, a milder purification process is of great interest. A variant of Protein A, called ZCa, has previously been engineered to bind to IgG in a calcium-dependent manner. The antibody binds to ZCa when calcium is present and releases when calcium is removed. For the IgG1 subclass, the elution still requires a slight lowering of the pH, which is why there is room for improvement of the molecule. A phage display selection has been performed with the aim to obtain calcium-dependent IgG1 binders that are able to release the antibodies upon calcium depletion at neutral pH. In addition, an attempt on increasing the alkaline stability of the binders was made. Sequence analysis of the selection output showed almost no indications of increased alkaline stability. Instead, M13K07 helper phages were exposed to new selections for increased alkaline tolerance which might be useful in future phage display selections. Even though the binders selected for in this project did show some promising characteristics, none of them were able to elute upon calcium depletion at neutral pH as aimed for. However, one of the variants did show promising results during most of the performed characterizations. Most interestingly, the elution properties of this variant could indicate a higher calcium-dependence in the interaction with the target than that of ZCa, although further characterizations need to be performed in order to draw any conclusions about possible improvements of this protein domain.

The glycine riboswitch is a structured RNA found upstream of genes in mRNA transcripts in many bacteria, functioning as a biofeedback gene regulator. Upon binding glycine, a complete RNA transcript including gene sequences is transcribed, effectively turning on gene expression. In an effort to understand the intricacies of its functioning, many mutants of the riboswitch were made and characterized during Ph. D. work, resulting in discovery of a P0 duplex/kink-turn motif involving a few nucleotides upstream of the established glycine riboswitch sequence which changed its ligand binding characteristics (Chapter 1). Previously, the two aptamers of the riboswitch were thought to cooperatively bind glycine, but with the inclusion of this leader sequence which forms a kink turn motif with the linker between the two aptamers, glycine binding in one aptamer no longer requires glycine binding in the other. Furthermore, the Kd from three species tested are now a similar, lower value of about 5 µM, indicating authenticity of this new consensus sequence. Glycine binding and interaptamer interaction both enhanced one another in trans aptamer assays. Another discovery from this was a shortened construct including all of aptamer II but only part of aptamer I in which a few specific nucleotides prevented glycine binding in aptamer II (Chapter 2). This may provide insight into the nature of interaptamer interactions in the full switch; addition of an oligonucleotide complimentary to these nucleotides restored glycine binding ability to aptamer II. With future development, this could also be a useful molecular biology tool, using two signals, glycine and an oligonucleotide, to allow gene expression. To precisely understand how any macromolecule functions, a 3D structure, obtainable by x-ray crystallography, is vital. A new technique to accomplish that for RNA, precedented in the protein world, is Fab chaperoned crystallography, which has advantages compared to RNA alone. A phage displayed library of Fabs with reduced codon diversity designed for RNA was created, the YSGR Min library (Chapter 3). Its Fabs had specificities and affinities equal to or greater than previous libraries which were originally created for phage displayed selection against proteins. Fab chaperoned RNA crystallography is currently in progress for the glycine riboswitch; the best resolution thus far is 5.3 … (Chapter 4). In addition to providing molecular insight into its gene regulation mechanism, a structure of the glycine riboswitch could be applied for use in structure based drug design of novel antibiotics targeting the riboswitch to disrupt important downstream carbon cycle genes in pathogenic bacteria.

Non-coding RNAs (ncRNAs) account for a higher percent of the genome than coding mRNAs, and are implicated in human disease such as cancer, neurological, cardiac and many others. While the majority of ncRNAs involved in disease were originally attributed to a class of RNAs called micro RNAs (miRNAs) with a small size of only about 19 -24 base pairs, emerging research has now demonstrated a class of long non-coding RNAs (lncRNAs) that have a size of over 200 base pairs to be responsible for gene regulation and other functional roles and have also found to contribute to pathogenesis in humans. The increased size and structural complexity require novel tools to study their interactions beyond RNA interference. Synthetic antibodies are classic tools and therapeutics utilized to study and treat proteins involved in human disease. Likewise we hypothesize that structured RNAs can also take advantage of synthetic antibodies to probe their functions and be utilized as therapeutics. Currently, antibodies have been raised against microbial riboswitches and other structured RNAs of single-celled organisms, and only one human structured RNA to the best of our knowledge. However, no one has yet to create a synthetic antibody capable of behaving as a therapeutic against a structured RNA. We therefore sought to raise an antibody Fab against a structured RNA, human initiator tRNA, a model oncogenic non-coding RNA and demonstrate its efficacy in vitro. We then characterized the antibody and explored delivery options in cancer cells including the use of nanoparticle delivery systems. With the emerging transcriptome revealing new ncRNAs implicated in human disease, our research has begun to address a new therapeutic strategy, laying down the foundation for the future of structured RNA-targeted therapies.

No description available.

Dans les maladies neurodégénératives comme la sclérose en plaques, la neuro-inflammation modifie l'activité de la barrière hémato-encéphalique (BHE) par des altérations cellulaires et moléculaires complexes. La caractérisation de tels changements moléculaires par une approche d'étiquetage in vivo justifie la recherche d’outils de ciblage fiables et de biomarqueurs. Les stratégies pour définir in vivo ces marqueurs sont cependant compliquées par la pléthore de molécules cibles accessibles, par l’intrication des régions atteintes au sein du tissu sain et par les altérations structurales potentielles des molécules cibles étudiées par histopathologie. Le but de ce travail est de rationaliser la découverte de biomarqueurs des altérations moléculaires dans les tissus par une stratégie de sélection in vivo de répertoires de phages présentant des peptides à leur surface (phage display), les ligands présents dans les deux répertoires (sain et pathologique) étant ensuite soustraits physiquement. Cette stratégie de soustraction (« PhiSSH ») permettant d’enrichir un répertoire en ligands spécifiques est d’un intérêt majeur dans le cas de répertoires complexes tels ceux obtenus dans des sélections in vivo.Nous présentons l'application de cette stratégie dans le modèle de rat de la sclérose en plaques, l’Encéphalomyélite Autoimmune Expérimentale (EAE), où les lésions disséminées dans le système nerveux central engendrent la sélection d’une grande quantité de clones s’associant au tissu sain, par comparaison avec les rats témoins en bonne santé. L'efficacité de la technique de soustraction a été contrôlée par séquençage massif des trois repertoires, «EAE», «SAIN», et «SOUSTRACTION». Plus de 95 % des clones communs aux répertoires EAE et contrôle sont absents du répertoire de la soustraction. Un ensemble de clones de phages et des peptides synthétisés chimiquement dessinés après l’analyse bioinformatique du répertoire de soustraction a été testé a) sur des tissus de rats EAE et sains et b) sur des cellules humaines en culture (HCMEC/D3) constituant un modèle de BHE, dans des conditions inflammatoires, (activation IL- 1ß) ou non activées. Un des clones et quatre peptide testés ont montré une association spécifique sur les cellules endothéliales de BHE dans des conditions inflammatoires. Pour identifier la cible d’un phage spécifique des lésions neuro-inflammatoires, nous avons mis en œuvre un procédé de création de liaison covalente entre ce phage et les protéines exprimées par des cellules de BHE cultivées en présence d’IL-1ß, puis effectué une analyse par spectométrie de masse. La galectine-1 est apparue comme une cible potential de ce phage. La découverte de biomarqueurs spécifiques de modifications moléculaires et cellulaires de régions inflammatoires disséminées dans les tissus sains, comme c’est le cas dans la plupart des pathologies présentant une activité neuro–inflammatoire, sera facilitée par l’utilisation de la stratégie de soustraction PhiSSH décrite dans ce document. / In neurodegenerative disorders like multiple sclerosis, neuroinflammation modifies the blood brain barrier (BBB) status by causing complex cellular and molecular alterations. Characterization of such molecular changes by an in vivo labeling approach is most challenging to generate reliable in vivo targeting tools and biomarkers. In vivo strategies to define such markers are, however, hampered by the plethora of the accessible target molecules, the vicinity of diseased target expression among healthy tissue and the potentially structural alterations of target molecules when studied by histopathology. The aim of this work is to streamline the biomarker discovery of pathological molecular tissue alterations by in vivo selection of phage displayed peptide repertoires that are further submitted to physical DNA subtraction (“PhiSSH”) of sequences encoding common peptides in both repertoires (HEALTHY and PATHOLOGY). The strategy of Subtraction allows thus the enrichment of clones specific for one repertoire and is of particular interest for complex repertoires produced by in vivo selection. We present the application of this strategy in the multiple sclerosis rat model, Experimental Autoimmune Encephalomyelitis (EAE) pathology, where target lesions are disseminated in the central nervous system (CNS) generating a large amount of clones binding to healthy tissue among the recovered repertoire clones binding to the lesions by comparison with healthy control rats. The efficiency of the subtraction was monitored by massive sequencing of the three repertoires, «EAE», «HEALTHY», and «SUBTRACTION». More than 95% of the clones common to EAE and Healthy repertoires were shown to be absent from the Subtraction repertoire. A set of randomly chosen clones and synthesized peptides from the EAE and subtraction repertoires were tested for differential labeling of a) diseased and healthy animal tissues and b) an in vitro BBB model, in IL-1ß challenged and resting control state culture human cells (hCMEC/D3). One of the phage clones and 4 chemically synthesized peptides showed specific binding to brain ECs in neuro-inflammatory conditions. Using a strategy of crosslinking of an EAE specific phage clone on protein targets expressed by IL-1ß activated ECs followed by mass spectrometry, we propose hypothetically Galectin-1 as a possible target of this phage. PhiSSH will be useful for in vivo screening of small peptide combinatorial libraries for the discovery of biomarkers specific of molecular and cellular alterations untangled with healthy tissues, as in most pathologies presenting neuroinflammatory activity.

Im Rahmen der vorliegenden Arbeit wird eine neue, kostengünstige und effiziente Strategie zur selektiven Beschichtung gedruckter Muster auf Papier entwickelt. Mittels Phagen-Display werden Peptide identifiziert, die materialspezifische Adsorption zeigen und effektiv zwischen Cellulose als Hauptbestandteil von Papier und dem Toner eines mit einem handelsüblichen Laserdrucker gedruckten Musters unterscheiden können. Diese genetisch selektierten 12mer Peptide können selektiv entweder nicht bedruckte Cellulose oder gedruckte Tonerstrukturen beschichten. Es werden vielfältige Adsorptionsuntersuchungen einzelner Peptide an den jeweiligen separaten Oberflächen und an gedruckten Mustern durchgeführt und diskutiert. Des Weiteren wird eine Ligationschemie mit Triazolindion genutzt, um z. Bsp. Farbstoffe oder funktionale Peptide selektiv auf einer Oberflächenbeschichtung zu lokalisieren. Diese Methodik bietet einen einfachen Zugang zur Funktionalisierung von Mustern auf papierbasierten Materialien, wodurch neue Wege zur Realisierung kostengünstiger diagnostischer oder biomedizinischer Geräte aufgezeigt werden können. / Within the scope of this thesis, a new, cost-effective and efficient strategy for the selective coating of printed patterns on paper is developed. Phage display biopanning identifies peptides that show material selective adsorption, effectively distinguishing between cellulose of paper and printed toner of standard office laser printers. These genetically selected 12mer peptides can selectively coat either non-printed cellulose or printed toner patterns. Numerous adsorption studies of individual peptides on the respective separated surfaces and on printed patterns are carried out and discussed. Furthermore, triazolindione ligation chemistry is exploited to introduce e.g. dyes or functional peptides selectively to the coatings. The strategy offers an easy access toward patterned functionalization of paper based materials, which potentially is of relevance for low cost diagnostics or biomedical devices.

Les anticorps catalytiques (ou abzyme) ont fait l’objet de nombreuses recherches et ont été produits pour réaliser de nombreuses réactions. Ces protéines ont été ensuite découvertes dans le sérum d’individus sains ou atteints de pathologies, dont les pathologies autoimmunes. Les études suggèrent que ces abzymes peuvent avoir des effets bénéfiques ou délétères sur la santé des individus. L’origine des anticorps catalytiques et leur rôle restent ambigus et doivent être approfondis. Nous avons développé une nouvelle stratégie visant à étudier les abzymes, basée sur la technologie du phage display. Nous avons construit 4 banques de fragments d’anticorps, chacune présentant un répertoire immun différent (fond génétique et état d’immunitaire) : saine et naïve, saine et immunisée, autoimmune et naïve, et autoimmune et immunisée. Les stratégies d’amplification et de clonage des régions variables des immunoglobulines ont été conçues afin d’optimiser la taille et la diversité des banques. Nous avons rassemblé les 4 banques en une banque unique élargie contenant 2.7×109 séquences. L’analyse des séquences a mis en évidence des différences dans les profils d’expression des sous-groupes de gènes selon la banque. Nous avons ensuite procédé à la sélection d’abzymes à activité β-lactamase en utilisant deux cibles : un peptide cyclique, et un dérivé de sulfone pénam, inhibiteurs de l’enzyme. Nous avons sélectionné 5 abzymes. Chacun de ces immunoglobulines ont des séquences protéiques propres, incluant un potentiel site actif. Ces résultats montrent que différents motifs peuvent assurer la fonction catalytique de la β-lactamase, confirmant la flexibilité moléculaire de cette enzyme. / Catalytic antibodies (or abzymes) have been the focus numerous studies for some decades and have been produced with the ability to catalyze a wide range of reactions. They have also been discovered naturally in normal physiological and pathological conditions, notably on the background of autoimmune disease. Some have beneficial effects and others are detrimental to individual’s health. Hence, the origin of abzymes and their role in the immune response are ambiguous and must be enhanced. We have developed a novel strategy for the study of abzymes based on the phage display technology. We have constructed 4 libraries representing 4 murine immune repertoires with different genetic backgrounds and immunological states : healthy and naïve, healthy and immunized, autoimmune and naïve , and autoimmune and immunized. The strategies for the amplification and cloning of the immunoglobulin (lg) variable regions have been designed to optimize the size and diversity of the libraries. We have been able to pool the four libraries to create a large repertoire of size 2.7x109. After sequence analysis, we have found a number of statistically significant differences between the libraries. We have then used two strategically chosen targets to select for antibodies endowed with β lactamase activity : a cycle peptide and a penam sulfone, both inhibitors of the enzyme. We have selected for a total of 5 lgs endowed with β lactamase activity. The selected abzymes have different amino acid sequences. 3D modeling has provides insights on potential active sites demonstrating the ability of different structures to maintain the β lactamase activity and confirming the flexibility of the active site.

Conselho Nacional de Desenvolvimento Científico e Tecnológico / CHAPTER I: Leprosy presents a clinical spectrum that spans from a strong cellular mediated immunity and bacili growth control of Mycobacterium leprae at the tuberculoid pole to a poor T cell immunity with extensive bacterial load at the lepromatous pole. The antigenic profile characterization in both clinical forms is a necessary step for discover and evaluation of recombinant peptides that are mimotopes of M. leprae antigens, which may present immunogenic potential, in order to obtain a beTer understanding of the disease evolution, and allowing the improvement of diagnosis, prognosis and therapeutics. Mimotopes of M. leprae antigens were selected from a random heptapeptide conformational library expressed in fusion with the pIII protein of the M13 phage, using as the ligand target the total purified IgM from leprosy patients of clinical forms, tuberculoid (TT) and lepromatous (LL), and a healthy control population. Recombinant peptides were selected by glycine elution (unspecific) and by mitsudin elution (specific). All clones, after bioinformatic analyses, were validated by immunoenzymatic and colony reduction assays. For the glycine selection, the TT pole presented 24 distinct fagotypes, while the LL pole presented only 14 fagotypes. For the mitsudin selection, only 4 fagotypes were obtained in the LL pole, and 8 fagotypes in the TT pole. The two most frequent mimotopes, in both TT and LL poles and in both elution protocols, were coincidents. The peptides LFPAMHQ and VERHPST were more frequent in the LL pole, and the peptides KNPTTGT and ETHPTTR were more frequent in the TT pole. The three cited first mimotopes had an accentuated plaque reduction with incubation of sera from LL patients; however, the mimotope ETHPTTR presented the highest reduction with sera from TT patients. The immunogenic potential of these mimotopes may be useful in the development of new diagnostic and therapeutic strategies for leprosy control in the future. CHAPTER II: The phenolic glycolipid 1 (PGL-1) is a membrane antigen highly specific of M. leprae, and it is not found in other mycobacteria. Serological tests with PGL-1 have been performed to detect circulating antibodies in multibacillary patients. Due to its importance in the clinical classification of leprosy patients, we have developed mimotopes of this non-proteic antigen through phage display in order to improve serological assays. In this investigation, a random heptapetide conformational library was selected to obtain specific ligands to the monoclonal antibody anti-PGL-1 CS-48. After three rounds of selection, 14 clones were sequenced and translated, generating six distinct peptides. The mimotope HWMLPED was the most frequent one (57%), suggesting an immunodominance. Serological tests with this mimotope were performed in comparison to the synthetic PGL-1 for 39 patients, classified according to their clinical form, together with their 44 household contacts, classified according to their index cases. Results were similar for T and LL patients. However, the intermediate forms were variable, differently from those results with PGL-1, which presented positivity only for multibacillary patients. The clinical form BT presented a seropositivity of 55.5% for the mimotope against 0% for the PGL-1, probably due the greater avidity of the mimotope to circulating antibodies, or due to the greater spepcificity of the peptide in detecting pure neural reaction, or yet a cross reaction with other human antibodies. The serological tests of household contacts for this same phage clone presented an average positivity of 20.5% versus an average of 7.5 for the PGL-1 antigen. It is probable that there was cross reaction of the mimotope with other antibodies; once it presented partial identity with other M. leprae proteins. The mimotopes must be further investigated, once they may be putative targets for the PGL-1 action in the immune humoral response, and also they could be useful in diagnostics and therapeutic strategies. / CAPITULO I: A hanseníase apresenta um espectro clínico que varia de uma forte resposta imune mediada por células e controle do crescimento do bacilo Mycobacterium leprae no pólo tuberculóide (T), a uma anergia em resposta celular, com alta carga bacteriana, no pólo virchoviano (V). A caracterização do perfil antigênico do bacilo nas formas clínicas se faz necessária para que novos peptídeos recombinantes, mimotopos de antígenos de M. leprae, sejam avaliados quanto ao seu potencial imunogênico, para que se tenha um melhor entendimento dos mecanismos de evolução da doença, e para permitir o aprimoramento do diagnóstico, prognóstico e terapêutica. Mimotopos de antígenos de M. leprae foram selecionados a partir de uma biblioteca conformacional de heptapeptídeos randômicos expressos em fusão com proteína pIII de fagos M13, utilizando como alvo ligante IgM total purificada de pacientes portadores de hanseníase de ambos os pólos, tuberculóide e virchoviano, e de contatos intradomiciliares sadios. Os peptídeos recombinantes foram selecionados por eluição em tampão glicina (inespecífico) e por eluição com mitsudina (específico). Todos os clones, após análises de bioinformática, foram validados por ensaios imunoenzimáticos e alguns por ensaios de redução de colônias. Na eluição com glicina, o pólo tuberculóide apresentou 24 fagótopos distintos, enquanto que o virchoviano apresentou 14. Já na eluição com mitsudina, foram obtidos apenas 4 fagótopos para pólo virchoviano e 8 para o pólo tuberculóide. Os dois mimotopos mais freqüentes, em ambas as formas clínicas e para as duas eluições foram coincidentes, sendo que os peptídeos LFPAMHQ e VERHPST foram os mais freqüentes no pólo virchoviano e os peptídeos KNPTTGT e ETHPTTR os mais freqüentes no pólo tuberculóide. Os três primeiros peptídeos, dos quatro acima citados, tiveram redução de colônias mais acentuada com soro de pacientes V, e o mimotopo ETHPTTR foi o que apresentou a maior redução com soro de pacientes T. O potencial imunogênico destes mimotopos pode ser útil no desenvolvimento de novas estratégias diagnósticas e terapêuticas para o controle da hanseníase. CAPITULO II: O Glicolipídeo Fenólico-1 (PGL-1) é um antígeno de membrana altamente específico de M. leprae, não sendo encontrado em outras micobactérias. Os testes sorológicos com o PGL-1 têm sido implementados para a detecção de anticorpos circulantes nas formas clínicas multibacilares. Por ser um alvo importante na classificação clínica dos pacientes, procurou-se desenvolver peptídicos miméticos deste antígeno não-protéico por phage display, como forma de aprimorar o teste sorológico. Neste estudo uma biblioteca conformacional de heptapeptídeos randômicos foi selecionada para obtenção de ligantes específicos ao anticorpo monoclonal anti-PGL-1 CS-48. Após 3 ciclos de seleção, 13 clones foram seqüenciados e traduzidos, gerando seis mimotopos distintos. O mimotopo HWMLPED foi o mais freqüente (61,5%), indicando ser imundominante entre os peptídeos. Testes sorológicos com este mimotopo foram realizados em comparação com o PGL-1 sintético para 37 pacientes, classificados conforme a forma clínica, juntamente com seus 44 contatos, classificados conforme seus casos índice. Os resultados obtidos com o mimotopo e PGL-1 foram similares nos pacientes com as formas clínicas polares T e V. Contudo, as formas intermediárias dimorfas foram altamente variáveis e significantes, diferentemente do PGL-1, que apresentou positividade somente para as formas multibacilares. A forma clínica DT, apresentou 55,5% de positividade com a utilização do fagótopo, contra 0% para o PGL-1, podendo ser uma maior avidez do fagótopo ao anticorpo circulante, ou maior especificidade do fagótopo para lesão neural pura, como também reação cruzada com outros anticorpos. O teste sorológico em contatos intradomiciliares para o fagótopo selecionado, apresentou uma média de 20,5% de positividade contra uma média de 7,5% no teste sorológico para o PGL-1. É provável que tenha ocorrido reação cruzada do mimotopo por este apresentar identidade parcial com proteínas do M. leprae. Os mimotopos devem ser analisados mais profundamente, pois podem indicar provável alvo de ação do PGL-1 na resposta imune humoral e ainda podem ser usados em estratégias diagnósticas e terapêuticas. / Doutor em Genética e Bioquímica

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior / Prostate cancer is the second cause of death in men by tumor, surpassed only by lung cancer. Its occurrence is estimated to be 51 to 100,000 cases per year. The increasing incidence levels observed may be partially explained by the evolution of diagnostic methods, quality of information systems and longer life expectancy. The identification of new cancer specific antigens and genes may provide important biomarkers for diagnosis and instruments for the development of new treatment strategies. The Phage Display technology may be able to select peptides with different aims, such as the discovery of mimetic antigens that are recognized by specific antibodies. Selected peptides may become potential tumor biomarkers for prostate cancer diagnosis. It could be possible to use this technology to identify proteins that are able to detect cancer earlier than the conventional methods, to predict disease staging, and to develop new treatment strategies based on more efficient biological targets. The immunization of SPF (specific pathogen free) male chickens with total proteins of tissues of prostate cancer has generated polyclonal specific IgY sera, which were used in biopanning procedures against random peptide libraries. Selected phages were characterized by sequencing and bioinformatics, and subsequently by dot immunoblotting and ELISA to validate their specificity. Selected peptides were mimotopes of putative proteins involved in the carcinogenesis process. These peptides were further tested for their possible use in the immune response diagnostics associated with tumor processes. In this work, we have also successfully developed a general immunosensor for diagnostics, performed on an exclusion liquid chromatography system based on a micro column resin separation, using the selected bacteriophages as carriers of antigens and antibodies. These phage are coupled to colored latex beads, which are activated with different chemical groups. The presence of phage in the process is of fundamental importance, once they favor the formation of the antigen-antibody complex, peptide-protein or peptide-substrate, amplifying the optical detection during chromatographic separation or by micro-agglutination in slides for optical microscopy detection. The new technology is practical and simple, and may also be used for detection of other biomolecules or chemical substances associated with infectious and genetic diseases, with high precision, sensitivity, specificity, and rapidity, using low sample volumes and presenting a low cost. / O câncer de próstata é a segunda causa de óbitos por câncer em homens, sendo superado apenas pelo câncer de pulmão. A ocorrência estimada é de 51 casos novos para cada 100 mil homens por ano para este tipo de câncer. O aumento observado nas taxas de incidência pode ser parcialmente justificado pela evolução dos métodos diagnósticos, pela melhoria na qualidade dos sistemas de informação do país e pelo aumento na expectativa de vida do brasileiro. A identificação de novos antígenos ou genes específicos do câncer de próstata pode prover novos biomarcadores e também fornecer instrumentos para o desenvolvimento de novas modalidades de tratamento. A tecnologia de Phage Display é capaz de selecionar peptídeos com diversas finalidades, como mimetizar antígenos reconhecidos por anticorpos. Peptídeos selecionados por esta técnica são potenciais marcadores tumorais para o diagnóstico do câncer de próstata. Por meio desta metodologia pode ser possível identificar proteínas capazes de detectar a resposta imune contra o tumor mais precocemente do que os métodos tradicionais, predizer o estadio atual do tumor, além de permitir o desenvolvimento de tratamentos mais eficientes. Pela imunização de galos SPF (livre de patógenos específicos) com proteínas totais de tecidos tumorais da próstata, foram obtidas IgY policlonais específicas que foram utilizadas no biopanning contra uma biblioteca de peptídeos recombinantes randômicos. Os fagos selecionados foram caracterizados por seqüenciamento e subsequentemente testados por dot immunoblotting e ELISA para validar a especificidade dos mesmos. Selecionou-se peptídeos que mimetizam proteínas prostáticas, possivelmente proteínas envolvidas no processo de tumorigênese. Esses peptídeos foram testados quanto a sua possível utilização no diagnóstico da resposta imune associada a processos tumorais. Neste trabalho, também foi desenvolvido com sucesso um imunossensor para diagnóstico que tem como base de detecção um sistema de cromatografia líquida por exclusão em micro colunas cromatográficas com bacteriófagos filamentosos carreadores de antígeno(s) e/ou anticorpo(s), selecionados por phage display, acoplados microesferas de látex coloridas, ativadas com diferentes grupamentos químicos. A presença do fago é de grande importância no processo, pois favorece a formação dos complexos antígeno-anticorpo, peptídeo-proteína ou peptídeo-substrato, ampliando a detecção ótica durante a separação por cromatografia ou por microaglutinação em microscopia ótica. A nova tecnologia pode também ser usada para a detecção de biomoléculas ou substâncias químicas associados a doenças infecciosas, parasitárias e genéticas, com rapidez, precisão, sensibilidade e reprodutibilidade, utilizando-se pequenos volumes de amostras e reagentes, apresentando praticidade e baixos custos. / Doutor em Genética e Bioquímica