Le mémoire est consacré à l'étude numérique des phénomènes survenant à l'interface solide-fluide. Trois processus ont été étudiés: auto-organisation de films moléculaires sur un substrat solide, adsorption du gaz moléculaires dans un matériau nanoporeux et la cristallisation à l'interface organique/inorganique. L'étude de l'auto-organisation et des transitions de phase dans des multicouches de l'azote moléculaires adsorbées sur graphite est présentée dans le chapitre III. L'analyse est focalisée sur l'hétérogénéité spatiale du système et son influence sur le mécanisme et température de transitions ordre/désordre et la fusion des couches. Elle complète ainsi l'étude numérique du diagramme de phase de l'azote moléculaire, bien connu pour le matériau massif (3D) et les monocouches (2D) adsorbées sur un substrat. Le chapitre IV présente une étude de cinétique du mélange des gaz (méthane et méthyle-mercaptan) confiné dans les nanopores de carbone (pores en forme de fentes, de dimensions latérales finies et largeur nanométrique). L'étude porte sur la capacité de stockage de pores, la dynamique des composantes du mélange des gaz sous confinement et l'évaluation de la quantité de l'odorant nécessaire pour une détection facile en cas de fuite. Chapitre V résume les résultats de l'étude préliminaire ayant pour but la mise en place des simulations de biomineralization à l'interface organique/inorganique. Les structures secondaires de deux biomolécules, human leucine-rich peptide hLRAP et full length amelogenin, rM179 ont été prédéterminées. Les plus probables configurations ont été optimisées dans un environnement aqueux. / The present work is devoted to computer simulations of phenomena occurring at solid-fluid interfaces. Three processes have been studied in details: auto organization of molecular films at a solid substrate, adsorption of molecular gas in confined geometry and crystal formation at organic-inorganic interface. Two classical simulation methods have been used: stochastic Monte Carlo and deterministic Molecular Dynamics.The study of self-organisation and phase transitions in molecular nitrogen multilayers adsorbed on the basal plane of graphite is presented in chapter III. It focusses on the systems' spatial heterogeneity and its influence on temperatures of order-disorder and melting transitions. This study completes the numerical analysis of molecular nitrogen phase diagram, well described and understood for 3d (bulk) and 2D (monolayer film) systems.The analysis of kinetics of fluid confined in nanopores is presented in chapter IV. The working case consists of methane-methyl mercaptan mixtures confined in slit-shaped carbon nanopores. Simulations focused on both: storage capacity of carbon pores of finite size and nanometric width, and dynamics of gas mixture components under confinement. An evaluation of odorant content necessary for easy gas leak detection is presented.Chapter V gathers the results of calculations performed to set up the simulations of biomineralization at the organic-inorganic interface. The secondary structures of two amelogenins (human leucine-rich peptide, hLRAP, and full length amelogenin, rM179) have been predicted. The most probable structures have been further refined and the chain folding optimized in aqueous environment.

The recent availability of X-ray Free Electron Lasers (XFELs) has opened a completely new and unexplored regime for the study of light-matter interactions. The extremely bright intensities delivered by XFELs can couple many photons into the target, turning well known interactions such as photoionization and scattering into new, non-linear, complex many-body phenomena. This thesis reports theoretical investigations aiming to improve the understanding of the fundamental processes and dynamics triggered by intense X-ray pulses, with a special focus in finite systems such as molecules and clusters. Sequential multiple photoionization in atomic clusters was investigated, where previous observations were extended for higher charge states where direct photoionization is frustrated. Through a rate equation study and subsequent molecular dynamics simulations, it was found that frustrated ionization is partially responsible for the low-energy peak observed in the electron energy spectrum. The influence of plasma evaporation over the formation of the sequential low-energy peak was also investigated, identifying the effects of the system size and photon energy. Multiple channel ionization was also investigated for the case of fullerenes. This is done through a series of studies, starting from a simplified rate equation scheme, and culminating with full molecular dynamics simulations. From these results, a good insight was obtained over the origin, physical meaning, and relevant parameters that give rise to the complicated features observed in the electronic spectra. The mechanisms responsible of all these features are expected to be present in other systems, making these results quite general. Diffractive imaging of biomolecules was studied in a final step, with a particular focus on the influence of intramolecular charge transfer mechanisms. To this end a conformer of T4 Lysozyme was used, a representative enzyme with well known structure. Charge migration is found to allow for additional processes such as proton ejection, a mechanism which enables an efficient release of energy from the system. This mechanism considerably suppresses structural damage for heavy ions, improving the quality of the measured diffraction patterns.

La voie pulmonaire suscite un intérêt grandissant pour l’administration systémique des peptides et protéines thérapeutiques, aujourd’hui encore administrés essentiellement par voie parentérale. Un microsystème a été conçu pour permettre de faciliter et accélérer les études in vitro de criblage de différentes biomolécules actives et de sélectionner les formulations les plus adaptées à leur pénétration à travers l’épithélium pulmonaire, en vue de sélectionner les meilleurs candidats à une administration par voie pulmonaire. Organisé en deux configurations distinctes, ce microsystème permet dans un premier temps d’obtenir des barrières épithéliales pulmonaires polarisées et jointives (cellules Calu-3) en seulement 7 jours dans des micropuits de 1mm², sans avoir à renouveler le milieu nutritif ni avoir recours à un appareillage externe associé au microsystème. Grâce à la mise au point d’une technique simple de fabrication, des plateformes de culture contenant jusqu’à 12 micropuits en parallèle sont aujourd’hui fabriquées de manière standardisée. L’évaluation du passage de molécules est ensuite réalisée sous une deuxième configuration dédiée à la mesure de la perméabilité des barrières épithéliales cultivées en micropuits. La capacité de différents candidats (nanoparticules et biomolécules) à traverser l’épithélium pulmonaire a été étudiée. Le passage de nanoparticules de PLGA revêtues de chitosane ainsi que le passage de l’insuline ont été démontrés avec succès. Enfin, l’électrophorèse capillaire couplée à une détection par fluorescence induite par laser (EC-LIF), compatible avec les faibles volumes manipulés dans ce microsystème, a été exploitée pour la détection et la quantification de l’insuline après passage des barrières pulmonaires miniaturisées. A cette fin, l’insuline a soit été marquée par le FITC, soit complexée à un anticorps ou a un aptamère fluorescents. A l’heure actuelle, seule la méthode développée pour le marquage de l’insuline par le FITC est utilisable à des fins de quantification, mais le recours à un aptamère a montré des premiers résultats encourageants. / The pulmonary route is of increasing interest for the systemic administration of therapeutic proteins and peptides, still largely administered parenterally. A microdevice was designed to facilitate and accelerate the in vitro screening studies of various active biomolecules and to select the most suitable formulations for penetration through the lung epithelium, in order to select the best candidates for an administration via the lungs. Organized in two distinct configurations, this microdevice allows as a first step the culture of tight polarized bronchial epithelial barriers (Calu-3 cells) in 7 days in 1 mm² microwells, without the need for medium renewal or the use of an external apparatus. A simple manufacturing technique was developed and glass culture platforms containing 12 parallel microwells can be obtained in a standardized manner. The ability of molecules to cross the pulmonary barrier is then performed in the second configuration of the microdevice, which is dedicated to the permeability measurement of the tight epithelial Calu-3 barriers cultured in microwells. Among the different candidates studied (nanoparticules and biomolecules), the pulmonary barrier permeability regarding PLGA nanoparticules coated with chitosan and regarding insulin has been successfully demonstrated. Finally, capillary electrophoresis with laser induced-fluorescence (CE-LIF), a technique compatible with the low volumes handled in this microdevice, has been exploited for insulin detection and quantification after its transport across the miniaturized pulmonary barriers. To this end, insulin was either FITC-labeled or complexed with a fluorescent antibody or aptamer. Currently, only the derivatization method can be used for a quantification purpose, but the use of an aptamer to indirectly quantitate insulin has shown encouraging results.

Este trabalho visou investigar as interações entre enzimas e polímeros em solução e a adsorção das mesmas sobre superfícies sólidas e para isto foi dividido em duas partes distintas. Na primeira parte a influência do poli(etileno glicol) (PEG), polímero considerado inerte e utilizado em muitos processosbiotecnológicos, na atividade enzimática e na conformação estrutural de enzimas foi estudada através de medidas de espectrofotometria- UV, calorimetria e espalhamento de raio-X de baixo ângulo (SAXS). Foram escolhidas neste estudo as enzimas glicose-6-fosfato desidrogenase (G-6-PDH) e hexoquinase (HK), que são enzimas largamente aplicadas em análises clínicas na determinação de glicose no sangue, e também a enzima álcool desidrogenase (AD), utilizada para determinação de concentração de álcool. Foram obtidos resultados quantitativos, numa faixa de baixa concentração de enzima, que indicam uma forte influência de PEG na atividade das enzimas estudadas. Medidas de calorimetria revelaram que PEG interage não só com a enzima em estudo mas também com a coenzima NADP+. Numa faixa de concentração maior, os resultados de SAXS mostraram que PEG exerce também um efeito significativo no processo de agregação das enzimas. Acima de tudo, foi evidenciado neste estudo que PEG não pode ser tratado como um polímero inerte, pois ele interfere na atividade e conformação de enzimas. As enzimas são macromoléculas complexas e PEG interage de forma diferenciada com cada enzima, merecendo atenção especial caso a caso. Na segunda parte do trabalho, o estudo da adsorção de hexoquinase (HK) e creatina fosfoquinase (CPK) sobre lâminas de silício foi realizado através de medidas de ângulo de contato, elipsometria in situ e microscopia de força atômica (AFM) em água. A CPK é uma enzima bastante utilizada em kits de determinação de creatina no sangue e no diagnóstico de desordens musculares. Este trabalho revelou que o mecanismo de adsorção de CPK sobre silício depende fortemente do pH. Em pH 4, 7 ou 9 CPK adsorveu mantendo a mesma conformação que tinha em solução. Medidas de espectrofotometria UV-Vis revelaram uma mudança no pH ótimo para atividade enzimática de CPK de 6,8 para 9 após adsorção. A HK imobilizada em esferas de vidro mostrou atividade maior do que HK imobilizada nas placas. A reutilização das esferas e placas recobertas com HK foi testada e observou-se que as atividades das enzimas adsorvidas no substrato esférico foram mantidas. Entretanto, nas placas revestidas a atividade foi perdida. As enzimas imobilizadas sobre esferas puderam ser reutilizadas pelo menos 3 vezes, mantendo a atividade por um período de até 3 semanas. / This work aimed to investigate the interactions between enzymes and polymers in solution and also the adsorption behavior of these enzymes on solid surfaces. For that reason it was divided into two parts. In the first part, the influence of poly(ethylene glycol) (PEG), a polymer considered inert and utilized in several biotechnological processes, on the enzymatic activity and structure of the enzyme was studied by means of UV spectrophotometry, calorimetric titration, circular dichroism (CD) and small angle X-ray scattering (SAXS). Glucose-6-phosphate dehydrogenase (G-6-PDH) and hexokinase (HK) were chosen because of their large application in clinical analysis for determination of glucose in the blood strain. Alcohol dehydrogenase (AD), which is widely used to determine alcohol concentration in various samples, was also used. Quantitative results, in a low enzyme concentration range, indicated a strong influence of PEG on the enzymes activity. The calorimetric measurements revealed no favorable interactions between enzyme and polymer, but indicated favorable interactions between PEG and co-enzyme NADP+. In a higher concentration range, SAXS results showed that PEG also exerts a significant effect on the enzyme aggregation process. This work showed that PEG shall no longer be treated as an inert polymer since it interferes in the enzyme activity and structure. The enzymes are complex macromolecules and PEG interacts differently with each one, deserving special attention in each case. In the second part of the work, the adsorption behavior of creatine phosphokinase (CPK) and hexokinase (HK) onto silicon wafers was studied by means of contact angle measurements, in situ ellipsometry and atomic force microscopy (AFM) in water. CPK was chosen due to its large application on the diagnosis of several muscle disorders. This work revealed that the adsorption mechanism of CPK on silicon surfaces is strongly dependent on pH. At pH 4, 6.8 or 9, CPK adsorbed keeping the same conformation as in solution. pectrophotometric measurements revealed a shift on the optimum pH from 6,8 to 9 upon CPK adsorption. HK adsorbed onto glass beads showed higher activity than HK immobilized on silicon wafers. HK covered glass beads could also be reused three times and for a period of at least three weeks. In the contrary, HK covered silicon wafers could not be reused. For practical purposes, HK covered glass beads showed to be a better “biosensor" than HK covered silicon wafers.

Proteins and DNA are essential to life as we know it and understanding their function is understanding their structure and dynamics. The importance of the latter is being appreciated more in recent years and has led to the development of novel interdisciplinary techniques and approaches to studying protein function. Three techniques to study protein structure and dynamics have been used and combined in different ways in the context of this thesis and have led to a better understanding of the three systems described herein. X-ray crystallography is the oldest and still arguably most popular technique to study macromolecular structures. Nuclear magnetic resonance (NMR) spectroscopy is a not much younger technique that is a powerful tool not only to probe molecular structure but also dynamics. The last technique described herein are molecular dynamics (MD) simulations, which are only just growing out of their infancy. MD simulations are computer simulations of macromolecules based on structures solved by X-ray crystallography or NMR spectroscopy, that can give mechanistic insight into dynamic processes of macromolecules whose amplitudes can be estimated by the former two techniques. MD simulations of the model protein GB3 (B3 immunoglobulin-binding domain of streptococcal protein G) were conducted to identify origins of discrepancies between order parameters derived from different sets of MD simulations and NMR relaxation experiments.The results highlight the importance of time scales as well as sampling when comparing MD simulations to NMR experiments. Discrepancies are seen for unstructured regions like loops and termini and often correspond to nanosecond time scale transitions between conformational substates that are either over- or undersampled in simulation. Sampling biases can be somewhat remedied by running longer (microsecond time scale) simulations. However, some discrepancies persist over even very long trajectories. We show that these discrepancies can be due to the choice of the starting structure and more specifically even differences in protonation procedures. A test for convergence on the nanosecond time scale is shown to be able to correct for many of the observed discrepancies. Next, MD simulations were used to predict in vitro thermostability of members of the bacterial Ribonuclease HI (RNase H) family of endonucleases. Thermodynamic stability is a central requirement for protein function and a goal of protein engineering is improvement of stability, particularly for applications in biotechnology. The temperature dependence of the generalized order parameter, S, for four RNase H homologs, from psychrotrophic, mesophilic and thermophilic organisms, is highly correlated with experimentally determined melting temperatures and with calculated free energies of folding at the midpoint temperature of the simulations. This study provides an approach for in silico mutational screens to improve thermostability of biologically and industrially relevant enzymes. Lastly, we used a combination of X-ray crystallography, NMR spectroscopy and MD simulations to study specificity of the interaction between Drosophila Hox proteins and their DNA target sites. Hox proteins are transcription factors specifying segment identity during embryogenesis of bilaterian animals. The DNA binding homeodomains have been shown to confer specificity to the different Hox paralogs, while being very similar in sequence and structure. Our results underline earlier findings about the importance of the N-terminal arm and linker region of Hox homeodomains, the cofactor Exd, as well as DNA shape, for specificity. A comparison of predicted DNA shapes based on sequence alone with the shapes observed for different DNA target sequences in four crystal structures when in complex with the Drosophila Hox protein AbdB and the cofactor Exd, shows that a combined ”induced fit”/”conformational selection” mechanism is the most likely mechanism by which Hox homeodomains recognize DNA shape and achieve specificity. The minor groove widths for all sequences is close to identical for all ternary complexes found in the different crystal structures, whereas predicted shapes vary between the different DNA sequences. The sequences that have shown higher affinity to AbdB in vitro have a predicted DNA shape that matches the observed DNA shape in the ternary complexes more closely than the sequences that show low in vitro affinity to AbdB. This strongly suggests that the AbdB-Exd complex selects DNA sequences with a higher propensity to adopt the final shape in their unbound form, leading to higher affinity. An additional AbdB monomer binding site with a strongly preformed binding competent shape is observed for one of the oligomers in the reverse complement strand of one of the canonical (weak) Hox-Exd complex binding site. The shape preference seems strong enough for AbdB monomer binding to compete with AbdB-Exd dimer binding to that same oligomer, suggested by the presence of both binding modes in the same crystal. The monomer binding site is essentially able to compete with the dimer binding site, even though binding with the cofactor is not possible, because its shape is very close to the ideal shape. A comparison of different crystal structures solved herein and in the literature as well as a set of molecular dynamics simulations was performed and led to insights about the importance of residues in the Hox N-terminal arm for the preference of certain Hox paralogs to certain DNA shapes. Taken together all these insights contribute to our understanding of Hox specificity in particular as well as protein-DNA interactions in general.

O presente trabalho apresenta estudos de lesão em biomoléculas (DNA e 2\'-deoxiguanosina) induzida por Cu(III)/tetraglicina (Cu(III)/G4), radicais de óxidos de enxofre (SO3·-, SO4·-, SO5·-), HO· e HSO5-, espécies estas geradas durante a autoxidação de S(IV) na presença de Cu(II)/G4 ou Cu(II) (ausência de tetraglicina) e traços de um segundo íon metálico (Ni(II), Co(II) ou Mn(II)). A formação dos radicais SO3·- e HO· foi detectada pela técnica de ressonância paramagnética eletrônica (EPR). As técnicas de espectrofotometria e dicroísmo circular foram empregadas para avaliar a formação de Cu(III)/G4 em diferentes condições experimentais, na presença e ausência de S(IV), e a interação entre os complexos de cobre (II)/(III) e a molécula de DNA. A eficiência da formação de Cu(III) depende da acidez, concentração de S(IV) e dos tampões utilizados. A lesão no DNA plasmidial pUC19 foi verificada empregando-se a técnica de eletroforese em gel de agarose. A extensão da lesão no DNA depende da acidez, concentração de S(IV), tempo de incubação e da presença de um segundo íon metálico. Usando a técnica de cromatografia líquida de alta eficiência (HPLC) foi possível estudar a oxidação de 2\'-deoxiguanosina a 8-oxo-7,8-dihidro-2\'-deoxiguanosina na presença dos oxidantes fortes gerados durante a autoxidação de S(IV) catalisada por Cu(II)/G4. Um estudo comparativo do efeito de vários íons metálicos evidenciou o sinergismo de Cu(II) e traços de um segundo íon metálico (Ni(II), Co(II) ou Mn(II), complexados ou não com tetraglicina). / The present work presents studies related to biomolecules damage (DNA and 2\'-deoxyguanosine) induced by Cu(III)/tetraglycine (Cu(III)/G4), oxysulfur radicals (SO3·-, SO4·-, SO5·-) and HSO5-, species generated during S(IV) autoxidation in the presence of Cu(II)/G4 or Cu(II) (absence of tetraglycine) and trace level of a second metal ion (Ni(II), Co(II) or Mn(II)). The formation of SO3·- and HO· radicals was detected by electronic paramagnetic resonance technique (EPR). Spectrophotometric and circular dichroism techniques were used to evaluate the Cu(III)/G4 formation in different experimental conditions, in the presence and the absence of S(IV), and the interaction of copper (II)/(III) complexes and DNA molecule. The effectiveness of Cu(III) formation depends on the acidity, S(IV) concentration, and buffers used. The damage on pUC 19 plasmid DNA was verified by agarose gel electrophoresis. The extent on the DNA damage was related to acidity, S(IV) concentration, incubation time and to the presence of a second metal ion. Using the high performance liquid chromatography technique (HPLC) it was possible to study the oxidation of 2\'-deoxyguanosine to 8-oxo-7,8-dihydro-2\'-deoxyguanosine in the presence of strong oxidants generated during the S(IV) autoxidation catalyzed by Cu(II)/G4. A comparative study of the effect of several metal ions showed the synergism of Cu(II) and traces of a second metal ion (Ni(II), Co(II) or Mn(II), as tetraglycine complexes or not).

隨著個人計算機運算能力的快速發展，虛擬藥物篩檢已被廣泛運用。目前運用於計算機輔助藥物虛擬篩選的化合物數據庫多為人工合成的數據庫，而用於天然產物藥物篩選的數據庫則較少報道。為了加速天然化合物的虛擬篩選，我們建立了包含約8000個天然產物的數據庫。他們中的大多數為傳統中藥。 / 為了驗證天然產物數據庫的可用性，其被用於篩選乙酰膽鹼酯酶抑製劑。該數據庫成功地確定了美國藥品監督管理局所批準的乙酰膽鹼酯酶抑製劑，如石杉鹼甲和他克林，表示該天然產物數據庫可以用於藥物虛擬對接篩選。 / 除了已知的乙酰膽鹼酯酶抑製劑，十二種植物化學物（大黃酸，大黃素，蘆薈大黃素，大黃酚，花椒毒素，珊瑚菜素，別異歐前胡素，歐前胡素，紫草素，乙酰紫草素，異戊紫草素和β，β-二甲基丙烯酰紫草素）被確定為新的乙酰膽鹼酯酶抑製劑。澱粉樣蛋白聚集可以導致神經細胞死亡；本研究中新發現的乙酰膽鹼酯酶抑製劑乙酰紫草素能夠阻止澱粉樣蛋白的聚集。除此之外，乙酰紫草素及其衍生物可以對抗過氧化氫誘導的神經細胞凋亡。其抗凋亡的活性作用是通過抑制活性氧的產生，以及保護線粒體膜電位的損失所實現的。亞鐵血紅素加氧酶在其神經細胞保護作用中起重要作用。 / 趨化因子受體4為跨膜G蛋白偶聯受體（GPCRs）。 CXCR4已被確定為一個新治療以及預防腫瘤轉移的新靶點。本研究利用分子對接篩選，從天然產物數據庫篩選選出CXCR4拮抗劑。通過分子對接和基於細胞的測定，黃芪甲苷，羥基紅花黃色素A和水飛薊賓已被確定為CXCR4拮抗劑。抗轉移的研究表明，黃芪甲苷和水飛薊賓抑制CXCL12誘導乳腺癌細胞的遷移和侵襲。此外，水飛薊賓也抑制CXCL12誘導的人臍靜脈內皮細胞管形成。另一方面，羥基紅花黃色素A對乳腺癌細胞的增殖表現出較強的抑製作用，因此很難進行抗轉移實驗。 / With the rapid advances in personal computing power, virtual drug screening has become increasingly popular. While there are numerous databases for synthetic compounds, there are few natural product databases that are specifically for in silico docking studies. To facilitate virtual docking on natural compounds, in-house Natural Products Database has been established, which contains approximately 8,000 naturally occurring chemicals so far. Most of them are documented Traditional Chinese Medicines. / In order to validate the usefulness of the database, in silico screening of acetylcholinesterase inhibitors (AChEIs) by virtual docking was performed. The database successfully identified the FDA-approved AChEIs such as huperzine and tacrine, indicating the in-house database is workable for natural products docking screening. / Apart from well-known AChE inhibitors, twelve phytochemicals (emodin, aloe-emodin, chrysophanol, rhein, xanthotoxin, phellopterin, alloisoimperatorin, imperatorin, shikonin, acetylshikonin, isovalerylshikonin and β, β-dimethylacrylshikonin) were identified as AChE inhibitors in this study that were not previously reported. Amyloid aggregation leads to toxic species that cause neuronal cell deaths, it was found that the newly identified AChEIs acetylshikonin and shikonin are able to prevent amyloid aggregation. A series of cell-based analysis were conducted for in vitro evaluation of the neuroprotective activities of the newly identified AChEIs. Acetylshikonin and its derivatives was found to prevent apoptotic cell death induced by hydrogen peroxide in human and rat neuronal SH-SY5Y and PC12 cells at 10 μM. Acetylshikonin exhibited the most potent anti-apoptotic activity through inhibition of reactive oxygen species (ROS) generation as well as protection of the loss of mitochondria membrane potential. Furthermore, acetylshikonin upregulates hemooxygenase 1(HO-1) which is a key step mediating its anti-apoptotic activity from oxidative stress in SH-SY5Y cells. / The C-X-C chemokine receptor type 4 (CXCR4) belongs to the class A family of seven transmembrane G protein-coupled receptors (GPCRs). CXCR4 has been identified as one of novel target against metastasis. A search for natural CXCR4 antagonists was conducted from natural product database by molecular docking for anti-metastasis study. Astragaloside IV, hydroxy safflower yellow A and silibinin have been identified as novel CXCR4 antagonists by both molecular docking and characterized by various cell-based assays. Anti-metastasis study showed that astragaloside IV and silibinin inhibited CXCL12-induced migration and invasion in breast cancer cells. In addition, silibinin also inhibited CXCL12-induced tube formation in human umbilical vein endothelial cells. On the other hand, hydroxy safflower yellow A exhibited a strong cytotoxicity on breast cancer cell proliferation, which is difficult to conduct anti-metastasis experiments. / Detailed summary in vernacular field only. / Detailed summary in vernacular field only. / Detailed summary in vernacular field only. / Detailed summary in vernacular field only. / Wang, Yan. / Thesis (Ph.D.) Chinese University of Hong Kong, 2013. / Includes bibliographical references (leaves 230-250). / Abstracts also in Chinese.

Le but de ce travail a été d’élaborer des nanoparticules magnétiques (MNPs) fonctionnalisées avec un groupement maléimide, stables, dispersibles dans l’eau et qui assureront une immobilisation covalente,sélective et efficace de biomolécules. Bien qu’un large choix de MNPs soit disponible dans le commerce, lamodification chimique de surface des MNPs reste une étape indispensable pour l’élaboration de matériauxspécifiques. Un contrôle précis de la fonctionnalisation de surface des MNPs est crucial, car en découlentleurs propriétés physico-chimiques, leur stabilité colloïdale, et la préservation de l’activité biologique de labiomolécule immobilisée. Dans ce travail, nous proposons d’augmenter le nombre de groupes fonctionnels(maléimide) accessibles à la surface de MNPs, en la modifiant par des agents de couplage dendritiques. Deuxtypes de MNPs coeur-écorce de 300 nm (avec un noyau de γ-Fe2O3 et une écorce de polymère ou de silice)ont été utilisés. Afin d’étudier l’effet «dendritique» sur la fonctionnalisation de surface, trois types d’agentsde couplage ont été conçus: des agents de couplage linéaires (contenant un groupe maléimide), des agents decouplage dendritiques à deux branches (contenant deux groupes maléimide) et des agents de couplagedendritiques à quatre branches (contenant quatre groupes maléimide). L’efficacité de ces MNPsfonctionnalisées pour immobiliser des biomolécules ou des modèles de biomolécules a été étudiée. Cetteétude a démontré l’intérêt de la fonctionnalisation de la surface des MNPs coeur-écorce par des structuresdendritiques pour une immobilisation efficace et spécifique de biomolécules. / The purpose of this work is to design stable, water-dispersible, maleimide functionalized magneticnanoparticles (MNPs) that will ensure selective covalent immobilization of biomolecules. While, a largechoice of MNPs is now commercially available, the surface modification of MNPs remains an indispensablestep in the elaboration of such MNPs. A precise control over the surface functionalization of MNPs iscrucial, because it governs their physicochemical properties, their colloidal stability, and their biologicalbehaviour. In this work with the aim to increase the number of functional groups on MNPs’ surfaces, it wasproposed to functionalize MNPs with dendritic coupling agents and to compare their efficiency with thosefunctionalized with a linear analogue. Moreover, it was decided to investigate the “dendritic effect” of thesurface functionalization on two types of core-shell MNPs (300 nm) that consist of a maghemite (γ-Fe2O3)ferrofluid core coated with: (I) polymer shell or (II) silica shell. Therefore, three types of coupling agents(that possess an amino or silane anchoring site) were synthesized: linear coupling agents (containing onemaleimide functional group); two-branched coupling agents (containing two maleimide functional groups)and four-branched dendritic coupling agents (containing four maleimide functional groups). Then, thecapacity of MNPs functionalized with dendritic or linear coupling agents to immobilize biomolecules ormodels of biomolecules was investigated. This study proved the efficiency of the surface functionalizationwith dendritic structures for the immobilization of biomolecules.

La recherche développée durant cette thèse constitue la première étape de développement d’une nouvelle méthodologie de détection sans marquage à l’échelle d’une goutte : un nouveau mécanisme de transduction est développé, basé sur l’actuation par électromouillage bi-fréquence d’un réseau d’ondes capillaires à la surface d’une goutte. La résonance capillaire de la goutte est étudiée par détection interférométrique de son apex en mouvement.La faisabilité de cette méthodologie est prouvée en caractérisant la cinétique d’évaporation de la goutte par glissement spectral des ondes capillaires.La deuxième partie de la thèse porte sur la modélisation du transport de biomolécules tensioactives dans une goutte : le transport diffusif, les processus d’ad/désorption aux surfaces, la condition cinématique d’un rayon variable(évaporation) ainsi qu’une quantité molaire finie de biomolécules sont pris en compte. Un nouveau nombre adimensionnel est proposé pour rendre compte de la taille finie d’une goutte. Puis le transport chimique associé au courant de dérive induit par les ondes capillaires (excitées par électromouillage oscillatoire)est pris en compte à l’aide de simulations numériques. Finalement,l’électromouillage haute et basse fréquence est appliqué au cas d’une goutte enrichie par des molécules d’albumine de sérum bovin. En utilisant conjointement l’interférométrie optique et l’imagerie, et en considérant la loi de Lippmann-Young, le vieillissement biochimique de la surface solide mouillée par la goutte est détecté. / This PhD research is thought of as a first step towards label freedigital biosensing. A novel transduction mechanism is developed, based on thegeneration of capillary waves along a drop surface induced by dual-frequencyelectrowetting. Acapillary resonance is measured by interferometry at the movingdrop apex. Aproof of concept of this electro-optical methodology for furtherintegration in a digital microsystem is given with characterization of drop evaporationkinetics. A second part focuses on modeling and numerical calculationsof the transport of surface active biomolecules in the drop. The model includesdiffusion, ad-/desorption phenomena together with a kinematic condition of avariable drop radius (evaporation) as well as a finite molecular amount of surfaceactive biomolecules. A dimensionless number is suggested to take into accountfinite size effects. Drop steady streaming due to oscillating electrowetting isfinally taken into account. Low- and high-frequency electrowetting is appliedto a drop laden with bovine serum albumin. By jointly using interferometry andimaging, enhancement of surface ageing is made evident under electrowetting.

Les brûlures sévères de plus de 20 % de la surface corporelle sont associées à un stress oxydant, à une réponse inflammatoire et à un hypermétabolisme intenses. La déficience en éléments-trace essentiels comme le zinc et le sélénium est également bien établie. Or, l'importance de ces éléments a été redécouverte avec la démonstration de leurs fonctions clés au niveau des systèmes antioxydants, de l'immunité, de l'inflammation, de la cicatrisation, de l'érythropoïèse... Dans ce contexte, le rôle de la supplémentation nutritionnelle, chez les patients brûlés, est primordial car elle participe à la qualité des soins et améliore leurs rétablissements. Toutefois, ce domaine reste encore trop peu exploré et un consensus dans les apports doit être trouvé. L'objectif de notre travail a été d'étudier, sur un modèle expérimental de rats brûlés subdéficients en zinc, l'impact d'une brûlure sévère sur l'évolution du statut en zinc, le statut antioxydant, le système glucose/insuline et l'expression de gènes impliqués dans l'homéostasie et le transport du Zn (ZnT, Zip, métallothionéine) ainsi que les conséquences d'un apport thérapeutique en zinc sur ces mêmes paramètres. La subdéficience en zinc entraîne, après brûlure, une modification des flux inter-organes de zinc ainsi qu'une accentuation de l'insulino-résistance sans toutefois altérer massivement le statut antioxydant. Si, les apports en zinc permettent de restaurer le statut en Zn et d'accroître l'expression de la métallothionéine, ils ne réussissent pas à augmenter l'activité des enzymes antioxydantes et affectent les transporteurs du zinc de manière aléatoire et inattendue. Par conséquent, conserver un statut en zinc optimal, après brûlure, est primordial. Cependant, la mise en œuvre de la supplémentation en zinc reste complexe et des travaux complémentaires sont nécessaires pour la maîtriser.