As Escherichia coli produtoras da toxina Shiga (STEC) são importantes patógenos humanos, causando desde diarréias até a síndrome hemolítica urêmica (SHU). Há diversos sorotipos associados a SHU, tais como O157:H7 e O113:H21. No Brasil o sorotipo O113:H21 ainda não aparece associado a SHU, embora seja frequentemente isolado de carcaças e fezes bovinas. Nosso grupo já investigou comparativamente as redes de coexpressão gênica (RCG) de STEC EH41 (associado à SHU) e Ec472/01 (isolado de fezes bovinas). A análise comparativa do perfil transcricional de EH41 e Ec472/01 revelou que somente EH41 expressa um conjunto de genes que inclui o regulador transcricional dicA. A maioria destes genes está situada em um único módulo transcricional e podem estar associados a fatores de virulência. Assim, este trabalho centrou-se numa abordagem de biologia de sistemas, integrando análises genômica e fenotípica da resposta de enterócitos Caco-2 à EH41 e Ec472/01. A análise genômica baseou-se no estudo temporal de RCG para compreender os mecanismos moleculares envolvidos na patogenicidade desses dois isolados. As alterações fenotípicas ocorridas nas células Caco-2 ao longo da exposição a cada um dos isolados de STEC foram visualizadas através de MEV. A análise genômica mostrou que o mecanismo molecular da resposta de Caco-2 durante a interação com EH41 ou Ec472/01 é claramente distinto. Nas redes do grupo Caco-2/EH41 as alterações topológicas incluíram a perda do status scale free e a sua recuperação, com o estabelecimento de uma nova hierarquia de genes na rede. Esses resultados se enquadram no modelo de redes para transição saúde-doença: a nova rede representa a resposta adaptativa da célula ao patógeno, o que não significa um retorno à normalidade. Já no grupo Caco-2/Ec472 as redes, após a perda do status scale free, não recuperam esse status até o final do período estudado, o que sugere um estado de transição mais prolongado para reorganização da hierarquia da rede. Mais ainda, através da caracterização dos módulos transcricionais, foi possível compreender dinamicamente os mecanismos moleculares envolvidos na resposta diferencial de Caco-2 aos dois isolados aqui estudados. STEC EH41 induz rapidamente a resposta inflamatória e apoptótica a partir da primeira hora de interação enterócito-bactéria. Por outro lado, células Caco-2 em contato com Ec472/01 ativam, a partir de uma hora, a fagocitose e, a partir da segunda hora, expressam moduladores da homeostase imune. A análise fenotípica das células Caco-2 mostrou, de forma nítida, uma maior destruição dos microvilos dos enterócitos em contato com EH41 do que com Ec472/01. Integrando os resultados genômicos e fenotípicos pode-se concluir que EH41 induz em Caco-2 - em comparação com Ec472/01 - maiores e mais rápidas alterações na expressão gênica global, além de uma resposta inflamatória e apoptótica excessiva, levando assim a alterações morfológicas mais pronunciadas nas células Caco-2. Em seu conjunto, esses resultados contribuem para uma melhor compreensão dos mecanismos moleculares envolvidos na patogenicidade das STECs associadas à SHU. Assim, as perspectivas de desenvolvimento deste trabalho deverão incluir a investigação de fatores de virulência e vias moleculares envolvidas na indução das respostas imunes que podem conduzir à SHU / Shiga toxin-producing Escherichia coli (STEC) O113:H21 strains are associated with human diarrhea and some of these strains may cause hemolytic uremic syndrome (HUS). In Brazil O113:H21 strains are commonly found in cattle but, so far, were not isolated from HUS patients. Previously, our group conducted comparative gene co-expression network (GCN) analyses of two O113:H21 STEC strains: EH41, isolated from a HUS patient in Australia, and Ec472/01, isolated from bovine feces in Brazil. Differential transcriptome profiles for EH41 and Ec472/01 revealed a gene set exclusively expressed in EH41, which includes the dicA putative virulence factor regulator. GCN analysis showed that this set of genes constitutes an EH41 specific transcriptional module which may be associated to virulence factors. Therefore, in the present work a system biology approach was conducted to investigate the differential Caco-2 response - genomic and phenotypic - to EH41 (Caco-2/EH41) or to Ec472/01 (Caco- 2/Ec472) along enterocyte-bacteria interaction. The genomic analysis was based on temporal GCN data in order to gain a better understanding on the molecular mechanisms underlying the capacity to cause HUS. The phenotypic alterations in Caco-2 during enterocyte-bacteria interaction were assessed by scanning electronic microscopy (SEM). The genomic analysis showed that the molecular mechanism of Caco-2 response to EH41 or to Ec472/01 during enterocyte-bacteria interaction is clearly different. The GCN topological analyses for Caco-2/EH41 group revealed loss of the scale-free status after one hour of interaction, persistence of this condition along the second hour and establishment of a new gene hierarchy thereafter. These events resemble the network mechanism of health-disease transition. The new established network represents an adaptive cell response to the pathogen and not the return to a \"normal\" state. Conversely, the networks for Caco-2/Ec472 group showed a slow and progressive loss of the scale-free status without its restoration at the end of the time interval here studied. Through transcriptional module characterization it was possible to reveal the dynamic of the molecular mechanism involved in the Caco-2 differential responses to the STEC isolates. EH41 induces a rapid inflammatory and apoptotic response just after the first hour of enterocyte-bacteria interaction. Instead, the Caco-2 response to Ec472/01 is characterized by phagocytosis activation at the first hour, followed by the expression of immune response modulators after the second hour. SEM phenotypic analysis of Caco-2 cells along enterocyte-bacteria interaction showed more intense microvilli destruction in cells exposed to EH41, when compared to cells exposed to Ec472/01. The integration of genomic and phenotypic data allowed us to conclude that EH41, comparatively to Ec472/01, induces greater and precocious global gene expression alterations in Caco-2, what is related to excessive inflammatory and apoptotic responses. These responses are associated with the pronounced morphological alterations observed by SEM in Caco-2 cells exposed to EH41. Altogether, these results contribute for a better understanding of the molecular mechanism involved in STEC pathogenicity associated to HUS. Therefore, the future perspectives for the development of the present work should include the investigation of virulence factors and molecular pathways involved in the induction of immune responses leading to HUS

L’altération du métabolisme postprandial des lipides et l’inflammation chronique associée apparaissent comme des éléments majeurs de la physiopathologie de l’obésité. L’implication de l’absorption intestinale d’endotoxines bactériennes du microbiote au cours de la digestion des lipides a été mise en évidence. Cependant la modulation de ces phénomènes par différentes quantités de lipides différemment structurés reste mal caractérisée, notamment chez les obèses. Nous avons mis en place un protocole clinique, en cross-over randomisé, visant à étudier chez des sujets normo-pondérés et obèses les conséquences de la digestion de matière grasse consommée, soit sous forme tartinée en différentes quantités (10 g ou 40 g), soit sous forme finement émulsionnée (40 g) sur le métabolisme postprandial des lipides et des endotoxines. Nous avons ainsi mis en évidence que l’augmentation plasmatique des chylomicrons, suite à une augmentation de la quantité de matière grasse ingérée, était plus précoce et plus importante chez les normo-pondérés que chez les sujets obèses, avec la sécrétion de plus gros chylomicrons suite à 40 g. Lorsque 40 g de matière grasse est émulsionnée, nous montrons qu’elle aboutit à un pic de triglycérides des chylomicrons plus précoce et plus élevé, reflétant une absorption facilitée des lipides, et de manière plus marquée chez l’obèse. Nous montrons aussi que cet état émulsionné aboutit à une β-oxydation plus élevée des lipides exogènes sur la journée, sans différence de perte fécale. Une endotoxémie postprandiale est également observée suite aux différents repas. L’accumulation postprandiale d’endotoxines, notamment présentes dans les chylomicrons, augmente avec la quantité de matière grasse tartinée en corrélation avec l’aire sous courbe des chylomicrons chez les obèses. En complément, l’absorption lipidique in vitro par des cellules Caco-2 était plus importante suite à l’incubation de milieux de lipolyse d’émulsions stabilisées par du caséinate que de la lécithine. Enfin, un test de digestion a été réalisé avant et après une chirurgie de by-pass gastrique pour identifier si une diminution drastique de l’absorption lipidique modifiait l’endotoxémie. Suite à l’opération, les patients sont davantage exposés aux endotoxines après la prise d’une émulsion au petit-déjeuner. En revanche, la LBP, protéine de transport des endotoxines proinflammatoire, diminue significativement à jeun et en postprandial suite à l’opération. L’ensemble de ces travaux démontrent qu’en plus des effets de la quantité de lipides ingérée sur la lipémie et l’absorption d’endotoxines associée, la structure de la matière grasse joue un rôle important dans la modulation du devenir métabolique des acides gras. La structuration des lipides alimentaires pourrait donc être spécifiquement adaptée afin d’optimiser le métabolisme lipidique postprandial, notamment chez des personnes obèses. / The alteration of postprandial lipid metabolism and associated chronic inflammation emerge as major elements in the obesity pathophysiology. The involvement of the intestinal absorption of endotoxin from microbiota during lipid digestion was recently highlighted. However, the modulation of these phenomena by different amounts of differently structured lipids remains poorly characterized, especially in obese people. We developed a cross-over randomized clinical study to explore in normal weight and obese subjects the consequences of fat digestion, consumed either spread on bread in different amounts (10 g or 40 g) or finely emulsified (40 g), on postprandial metabolism of lipids and endotoxins. We have demonstrated that the increase in plasma chylomicrons, after increase in the amount of fat ingested, was earlier and greater in normal-weight than in obese subjects, with the secretion of larger chylomicrons after consumption of 40 g of spread fat. When 40 g of fat is emulsified, we show that it leads to an earlier and higher peak of chylomicron triglycerides, reflecting facilitated absorption of fat, and more significantly in obese subjects. We also show that emulsified fat results in higher β-oxidation of exogenous lipids over the day, with no difference in fecal excretion. Postprandial endotoxemia was also observed in response to different meals. The postprandial accumulation of endotoxins, present in chylomicrons, increases with the amount of spread fat ingested and it is correlated with the area under the curve of chylomicrons in obese subjects. In addition, the in vitro lipid absorption by Caco-2 cells was greater following incubation with lipolysis media of emulsions stabilized by caseinate than lecithin. Finally, a digestion test was conducted before and after gastric bypass surgery to identify whether a drastic reduction in lipid absorption altered metabolic endotoxemia. After surgery, patients are more exposed to endotoxins in the morning after emulsion consumption at breakfast. However, LBP, a proinflammatory protein transporting endotoxins, significantly decreases after surgery. Altogether, these studies demonstrate that in addition to the metabolic effects of dietary fat intake on lipemia and associated endotoxemia, the fat structure also plays an important role in the modulation of further fatty acid handling. Structuring of dietary lipids could thus be specifically adapted to optimize postprandial lipid metabolism, especially in obese people.

Le réchauffement climatique est lié aux augmentations des concentrations de gaz à effet de serre dans l'atmosphère terrestre et en particulier aux émissions anthropiques de CO₂. La séquestration géologique a la capacité et la longévité potentielles pour diminuer de façon significative les émissions anthropiques de CO₂. Cette séquestration à grande profondeur induit des risques de fuite des réservoirs géologiques. Parmi les scénarios de fuite envisagés, celui d'une fuite diffuse est le plus inquiétant puisque sans surveillance, cette fuite pourrait perdurer et entrainer des séquelles sur l'environnement ainsi que des risques pour les populations. Des outils et protocoles de surveillance doivent donc être mis au point pour la surveillance en proche surface. Ce travail de thèse s'inscrit dans le cadre de cette problématique. Il a pour objectif la caractérisation, la quantification et la modélisation du transport et des interactions du CO₂ dans une zone non saturée carbonatée. Ce travail a suivi une approche expérimentale sur un site pilote naturel à Saint-Emilion (Gironde, France), avec la réalisation de fuites diffuses en ZNS carbonatée. Cette étude aborde plusieurs thématiques: la description et l'instrumentation du site pilote naturel ; la caractérisation physico-chimique de l'hétérogénéité du réservoir carbonaté ; l'étude du fonctionnement naturel de la ZNS carbonatée et en particulier la mise en place d'une ligne de base des concentrations en CO₂ ; la caractérisation de l'extension des panaches de gaz suite à des expériences de fuite diffuse dans la ZNS carbonatée et l'étude par simulation numérique des interactions gaz-eau-roche lors d'une fuite diffuse de CO₂ dans une ZNS carbonatée. Les résultats de ces travaux montrent l'importance de la caractérisation de l'hétérogénéité du réservoir carbonaté ainsi que des techniques d'échantillonnage et d'analyse des différentes phases en présence. L'établissement de la ligne de base a une importance particulière pour permettre de distinguer les variations naturelles de celles induites par une fuite diffuse de CO₂ dans la ZNS carbonatée. Les modes de transport du CO₂ vont évoluer en fonction des paramètres physico-chimiques. Ce transport se fait par advection et/ou par diffusion. L'utilisation de gaz inertes au niveau du site de séquestration géologique est très importante puisque la détection de ces traceurs permettrait de prédire les arrivées de panaches de CO₂ en proche surface. Par ailleurs, les interactions chimiques doivent être prises en compte dans les modèles de transport afin de pouvoir définir les facteurs de retard et l'impact d'une fuite diffuse de CO₂ sur une ZNS carbonatée. / Global warming is related to atmospheric greenhouse gas concentration increase and especially anthropogenic CO₂ emissions. Geologic sequestration has the potential capacity and the longevity to significantly diminish anthropogenic CO₂ emissions. This sequestration in deep geological formation induces leakage risks from the geological reservoir. Several leakage scenarios have been imagined. Since it could continue for a long period, inducing environmental issues and risks for human, the scenario of a diffusive leakage is the most worrying. Thus, monitoring tools and protocols are needed to set up a near-surface monitoring plan. The present thesis deals with this problematic. The aims are the characterisation, the quantification and the modelling of transport and interactions of CO₂ in a carbonate unsaturated zone. This was achieved following an experimental approach on a natural pilot site in Saint-Emilion (Gironde, France), where diffusive gas leakage experiments were set up in a carbonate unsaturated zone. Different aspects were investigated during the study: natural pilot site description and instrumentation; the physical and chemical characterisation of carbonate reservoir heterogeneity; the natural functioning of the carbonate unsaturated zone and especially the set-up of a CO₂ concentrations baseline; the characterisation of gas plume extension following induced diffusive leakage in the carbonate unsaturated zone and the study of gas-water-rock interactions during a CO₂ diffusive leakage in a carbonate unsaturated zone through numerical simulations. The results show the importance of the carbonate reservoir heterogeneity characterisation as well as the sampling and analysing methods for the different phases. The baseline set-up is of main interest since it allows discrimination between the induced and the natural CO₂ concentrations variations. The transfer of CO₂ in a carbonate unsaturated zone is varying in function of physical and chemical properties. This transfer is done by diffusion and/or advection. Because the detection of the noble gases allows the prediction of CO₂ plume arrival, the use of tracers in the sequestration site is of main importance. The chemical interactions have to be taken under account in transport models in order to predict delay factors and the impact of a CO₂ leakage in a carbonate unsaturated zone.

La physiopathologie du diabète de type II se caractérise par de sévères anomaliesmétaboliques telles que l’hyperglycémie et les dyslipidémies contribuant au développementdes maladies cardiovasculaires. Une altération de l’activité de l’AMPK dans les tissus tels quele muscle squelettique et le foie est associée à ces désordres métaboliques alors que sonactivation pharmacologique permet de les rétablir. Toutefois, le complexe hétérotrimériqueαβγ tissu-spécifique de l’AMPK confère une régulation et des rôles distincts qui demeurentinexplorés dans l’intestin, un organe favorisant pourtant l’augmentation de l’absorption desnutriments en situation de diabète de type II. La présente étude démontre une prépondérancedu complexe α1β2γ1 de l’AMPK dans les cellules intestinales Caco-2 dont l’un des rôles de lasous-unité α1 est de réguler l’ACC, l’enzyme de synthèse des acides gras. Contrairement àl’AMPK exprimée dans le foie, elle ne régule pas l’HMG-CoA Réductase impliquée dans lasynthèse du cholestérol. L’activation de l’AMPK mime l’effet de l’insuline en réduisantl’absorption intestinale du glucose et des lipides alors que son altération en situationd’insulino-résistance (e.g : induite par le 4-HHE dans un modèle cellulaire Caco-2 ou induitepar la diète dans le modèle animal Psammomys obesus) favorise l’absorption du glucose etdes lipides, ce qui exacerberait l’hyperglycémie et la dyslipidémie postprandiale associées audiabète de type II. L’AMPK au niveau intestinal constitue donc une cible thérapeutiquepotentielle complémentaire pour la prévention et le traitement du diabète de type II. / Physiopathology of type II Diabetes is characterized by severe metabolic abnormalities suchas hyperglycemia and dyslipidemia also implicated in development of cardiovasculardiseases. Impaired AMPK activity in tissues such as skeletal muscle and liver is associatedwith these metabolic disorders whereas its pharmacologic activation is able to restore suchabnormalities. Nevertheless, tissue-specific heterotrimeric αβγ AMPK likely confers distinctroles and regulation that remain unexplored in intestine, an organ promoting enhancednutrients absorption in type II diabetes situation. This study demonstrates α1β2γ1 AMPKcomplex preponderance in intestinal Caco-2 cells whose α1 subunit role is to regulate ACCenzyme responsible of fatty acid synthesis. Unlike in the liver, AMPK doesn’t regulate HMGCoAreductase enzyme implicated in cholesterol synthesis. AMPK activation mimics insulineffect by reducing intestinal glucose and lipids absorption whereas its alteration in insulinresistancesituation (e.g.: induced by 4-HHE in Caco-2 cell model or in Psammomys obesusanimal model) enhances glucose and lipids absorption which could exacerbate postprandialhyperglycemia and dyslipidemia associated to type II diabetes. Thus, AMPK at the intestinallevel could be a potential therapeutic target in prevention and treatment of type II diabetes

As Escherichia coli produtoras da toxina Shiga (STEC) são importantes patógenos humanos, causando desde diarréias até a síndrome hemolítica urêmica (SHU). Há diversos sorotipos associados a SHU, tais como O157:H7 e O113:H21. No Brasil o sorotipo O113:H21 ainda não aparece associado a SHU, embora seja frequentemente isolado de carcaças e fezes bovinas. Nosso grupo já investigou comparativamente as redes de coexpressão gênica (RCG) de STEC EH41 (associado à SHU) e Ec472/01 (isolado de fezes bovinas). A análise comparativa do perfil transcricional de EH41 e Ec472/01 revelou que somente EH41 expressa um conjunto de genes que inclui o regulador transcricional dicA. A maioria destes genes está situada em um único módulo transcricional e podem estar associados a fatores de virulência. Assim, este trabalho centrou-se numa abordagem de biologia de sistemas, integrando análises genômica e fenotípica da resposta de enterócitos Caco-2 à EH41 e Ec472/01. A análise genômica baseou-se no estudo temporal de RCG para compreender os mecanismos moleculares envolvidos na patogenicidade desses dois isolados. As alterações fenotípicas ocorridas nas células Caco-2 ao longo da exposição a cada um dos isolados de STEC foram visualizadas através de MEV. A análise genômica mostrou que o mecanismo molecular da resposta de Caco-2 durante a interação com EH41 ou Ec472/01 é claramente distinto. Nas redes do grupo Caco-2/EH41 as alterações topológicas incluíram a perda do status scale free e a sua recuperação, com o estabelecimento de uma nova hierarquia de genes na rede. Esses resultados se enquadram no modelo de redes para transição saúde-doença: a nova rede representa a resposta adaptativa da célula ao patógeno, o que não significa um retorno à normalidade. Já no grupo Caco-2/Ec472 as redes, após a perda do status scale free, não recuperam esse status até o final do período estudado, o que sugere um estado de transição mais prolongado para reorganização da hierarquia da rede. Mais ainda, através da caracterização dos módulos transcricionais, foi possível compreender dinamicamente os mecanismos moleculares envolvidos na resposta diferencial de Caco-2 aos dois isolados aqui estudados. STEC EH41 induz rapidamente a resposta inflamatória e apoptótica a partir da primeira hora de interação enterócito-bactéria. Por outro lado, células Caco-2 em contato com Ec472/01 ativam, a partir de uma hora, a fagocitose e, a partir da segunda hora, expressam moduladores da homeostase imune. A análise fenotípica das células Caco-2 mostrou, de forma nítida, uma maior destruição dos microvilos dos enterócitos em contato com EH41 do que com Ec472/01. Integrando os resultados genômicos e fenotípicos pode-se concluir que EH41 induz em Caco-2 - em comparação com Ec472/01 - maiores e mais rápidas alterações na expressão gênica global, além de uma resposta inflamatória e apoptótica excessiva, levando assim a alterações morfológicas mais pronunciadas nas células Caco-2. Em seu conjunto, esses resultados contribuem para uma melhor compreensão dos mecanismos moleculares envolvidos na patogenicidade das STECs associadas à SHU. Assim, as perspectivas de desenvolvimento deste trabalho deverão incluir a investigação de fatores de virulência e vias moleculares envolvidas na indução das respostas imunes que podem conduzir à SHU / Shiga toxin-producing Escherichia coli (STEC) O113:H21 strains are associated with human diarrhea and some of these strains may cause hemolytic uremic syndrome (HUS). In Brazil O113:H21 strains are commonly found in cattle but, so far, were not isolated from HUS patients. Previously, our group conducted comparative gene co-expression network (GCN) analyses of two O113:H21 STEC strains: EH41, isolated from a HUS patient in Australia, and Ec472/01, isolated from bovine feces in Brazil. Differential transcriptome profiles for EH41 and Ec472/01 revealed a gene set exclusively expressed in EH41, which includes the dicA putative virulence factor regulator. GCN analysis showed that this set of genes constitutes an EH41 specific transcriptional module which may be associated to virulence factors. Therefore, in the present work a system biology approach was conducted to investigate the differential Caco-2 response - genomic and phenotypic - to EH41 (Caco-2/EH41) or to Ec472/01 (Caco- 2/Ec472) along enterocyte-bacteria interaction. The genomic analysis was based on temporal GCN data in order to gain a better understanding on the molecular mechanisms underlying the capacity to cause HUS. The phenotypic alterations in Caco-2 during enterocyte-bacteria interaction were assessed by scanning electronic microscopy (SEM). The genomic analysis showed that the molecular mechanism of Caco-2 response to EH41 or to Ec472/01 during enterocyte-bacteria interaction is clearly different. The GCN topological analyses for Caco-2/EH41 group revealed loss of the scale-free status after one hour of interaction, persistence of this condition along the second hour and establishment of a new gene hierarchy thereafter. These events resemble the network mechanism of health-disease transition. The new established network represents an adaptive cell response to the pathogen and not the return to a \"normal\" state. Conversely, the networks for Caco-2/Ec472 group showed a slow and progressive loss of the scale-free status without its restoration at the end of the time interval here studied. Through transcriptional module characterization it was possible to reveal the dynamic of the molecular mechanism involved in the Caco-2 differential responses to the STEC isolates. EH41 induces a rapid inflammatory and apoptotic response just after the first hour of enterocyte-bacteria interaction. Instead, the Caco-2 response to Ec472/01 is characterized by phagocytosis activation at the first hour, followed by the expression of immune response modulators after the second hour. SEM phenotypic analysis of Caco-2 cells along enterocyte-bacteria interaction showed more intense microvilli destruction in cells exposed to EH41, when compared to cells exposed to Ec472/01. The integration of genomic and phenotypic data allowed us to conclude that EH41, comparatively to Ec472/01, induces greater and precocious global gene expression alterations in Caco-2, what is related to excessive inflammatory and apoptotic responses. These responses are associated with the pronounced morphological alterations observed by SEM in Caco-2 cells exposed to EH41. Altogether, these results contribute for a better understanding of the molecular mechanism involved in STEC pathogenicity associated to HUS. Therefore, the future perspectives for the development of the present work should include the investigation of virulence factors and molecular pathways involved in the induction of immune responses leading to HUS

Die niedrige Inzidenz chronisch-entzündlicher Darmerkrankungen (CED) in ostasiatischen Ländern im Vergleich zu Westeuropa und den USA könnte auf unterschiedliche Lebensstile und Ernährungsgewohnheiten zurückzuführen sein. Asiaten nehmen mit der Nahrung viel höhere Mengen an Isoflavonen zu sich als Europäer und US-Amerikaner. Diese sind in der Lage, wie natürliche Östrogene an Östrogenrezeptoren (ER) zu binden. Für das Östrogen 17β-Östradiol (E2) sowie selektive Liganden des ERβ sind antiinflammatorische Wirkungen im Darm bereits nachgewiesen worden. Diese Arbeit untersuchte in Modellsystemen für CED die antiinflammatorischen Eigenschaften von Isoflavonen, speziell von Genistein, und stellte einen Vergleich mit synthetischen ER-selektiven Liganden sowie E2 her, um die Involvierung der beiden ER-Subtypen zu evaluieren. In tierexperimentellen Studien wurde der Einfluss der Testsubstanzen auf Ausprägung und Verlauf einer Kolitis in zwei Nagermodellen (HLA-B27 transgene Ratte und TNBS-induzierte Kolitis) analysiert. Ein Ernährungsexperiment, in dem eine Gruppe der Tiere bereits in utero sowie postnatal über Muttermilch und Futter hohen Phytoöstrogenspiegeln ausgesetzt war, zeigte wider Erwarten keine antiinflammatorischen Effekte auf die akute Ausprägung der induzierten Kolitis. Stattdessen waren die untersuchten Parameter bei dieser Ernährungsform gegenüber prä- und postnatal normal ernährten Tieren verstärkt. Dagegen bewirkte oral verabreichtes Genistein in der chronischen Phase der TNBS-induzierten Kolitis eine Unterdrückung der Entzündungsparameter im Darm. Die subkutane Verabreichung von Genistein, eines steroidalen ERβ-selektiven Agonisten, oder von E2 führte hingegen zu keiner signifikanten Einflussnahme auf die untersuchten Parameter in der akuten Phase der Inflammation. Zur Charakterisierung der molekularen Grundlagen einer antiinflammatorischen Wirkung von E2, synthetischen ER-selektiven Agonisten und Genistein wurden in vitro Studien mit Kolonkarzinomzelllinien (HT-29 und Caco-2) durchgeführt. Hierzu wurden die Zellen mit Interleukin-1β (IL-1β) stimuliert, was eine Induktion der inflammationsassoziierten Gene Cyclooxygenase-2 und Interleukin-6 auf mRNA Ebene bewirkte. Bis auf Genistein konnten für die getesteten Substanzen keine antiinflammatorischen Effekte auf die mRNA-Expression der induzierten Markergene beobachtet werden. Genistein bewirkte in Caco-2 Zellen eine Hemmung der untersuchten Gene. Weitere Analysen ergaben, dass die beiden Zelllinien ER nur schwach bzw. gar nicht exprimieren. Eine Transfektion von HT-29 Zellen mit ERα führte zu einer deutlichen Hemmung der Expression der Markergene durch E2, während eine Transfektion mit ERβ lediglich einen schwach hemmenden Effekt bewirkte. Die Ergebnisse der vorliegenden Arbeit legen nahe, dass die niedrigen CED-Inzidenzraten in Ostasien wohl nicht allein auf dem dortigen hohen Isoflavonkonsum beruhen, sondern auch anderen Komponenten des Lebensstils zuzuschreiben sind. Dennoch deutet sich an, dass das Genistein, bei oraler Administration, die Regeneration des geschädigten Darmgewebes im chronischen Erkrankungsverlauf unterstützen und damit auch zur Prävention von Kolonkarzinomen beitragen könnte. Bei antiinflammatorischen Effekten von ER-Liganden spielt die Transaktivierung von ER eine entscheidende Rolle. Die Wirkung von Genistein in untransfizierten Caco-2 Zellen legt jedoch auch die Teilnahme weiterer Mechanismen nahe, die noch zu untersuchen sind. Vor diesem Hintergrund erscheinen weiterführende Untersuchungen zum Einsatz von steroidalen ER-Agonisten und Genistein bei CED und den zugrunde liegenden Mechanismen als sinnvoll.

Amadori-Produkte werden spontan während der ersten Phase der Maillard-Reaktion aus reduzierenden Zuckern und Aminen wie Lysin gebildet. Sie entstehen während der Erhitzung von Lebensmitteln und in vivo. Der enzymatische Abbau solcher spontan gebildeten Produkte ist Thema dieser Arbeit. Ein Teil untersuchte die Rolle von Oligosaccharid-Amadori-Produkten während der Verdauung von Kohlenhydraten im Dünndarm. Aufgrund ihrer strukturellen Ähnlichkeit mit bekannten Glycosidase-Inhibitoren wurde eine hemmende Wirkung der Amadori-Produkte auf die Kohlenhydratverdauung vermutet. Der andere Teil beschäftigte sich mit Fructosamin-3-kinase (FN3K) und dessen verwandtem Enzym Fructosamin-3-kinase-related Protein (FN3K-RP) aus humanen Erythrocyten. Diese Ketosaminkinasen werden als Proteinreparaturenzyme betrachtet, sogar als enzymatische Verteidigung gegen Glykierung in vivo diskutiert. Durch ihre Reaktion entstehen jedoch auch hoch-reaktive 1,2-Dicarbonylverbindungen, die weitere Proteinschäden bewirken können. Noch ist nicht klar, ob die Ketosaminkinasen die pathophysiologischen Folgen der Glykierung verhindern oder fördern. In dieser Arbeit wurde die Substratspezifität von Ketosaminkinasen mit einer Reihe von Amadori-Produkten untersucht. Damit könnten Inhibitoren zur weiteren Enzymcharakterisierung oder sogar für pharmazeutische Anwendungen identifiziert werden. Außerdem wurde die Variabilität der Enzymaktivitäten von Mensch zu Mensch in einer Kohorte von 100 Probanden untersucht. Als Modell für die menschliche Kohlenhydratverdauung im Dünndarm wurden Caco-2-Zellen als Monolayer etabliert. Deren Sucrase-Isomaltase kann die alpha-glycosidische Bindung in Amadori-Produkten von Maltose und Maltotriose mit Lysin und auch in Maltulose hydrolysieren. Trotz der Aminogruppe hemmen diese Amadori-Produkte die Maltosehydrolyse nur schwach als konkurrierende Substrate. Lactulosyllysin konnte nicht durch die Lactase der Caco-2-Zellen hydrolysiert werden. Tagatosyllysin und die Heyns-Produkte Glucosyllysin und Mannosyllysin hemmten die Lactosehydrolyse schwach. Alle beobachteten Hemmeffekte sind wahrscheinlich zu schwach, um während der Verdauung in vivo bedeutsam zu sein. Für FN3K konnte Desoxypiperidinofructose als kompetitiver Inhibitor identifiziert werden (Kic 0,006 mM). FN3K zeigte nur geringe Selektivität gegenüber Amadori-Produkten verschiedener Amine, ausgenommen aromatischer Amine. FN3K-RP war in Erythrocyten wesentlich aktiver als FN3K, auch wenn die Aktivität nicht selektiv inhibiert werden konnte. Beide Enzymaktivitäten unterscheiden sich unter den 100 Probanden, mit einer Spannweite von 3 bis 12 mU/g Hämoglobin für FN3K und 60 bis 135 mU/g Hb für FN3K und FN3K-RP zusammen. Es scheint eine Verbindung zwischen der Ketosaminkinase-Aktivität in Erythrocyten und Nierenerkrankungen, familiär auftretendem Diabetes mellitus, sowie familiär aufgetretenen Herzinfarkten oder Schlaganfällen zu bestehen, wie orientierende Auswertungen zeigten. Deshalb ist eine genauere Untersuchung der physiologischen Bedeutung der Ketosaminkinasen nötig. / Amadori products are formed spontaneously from reducing sugars and amines, e.g. lysine, during the first phase of the Maillard reaction. They occur in heated food and in vivo. The thesis focuses on the enzymatic degradation of such spontaneously formed compounds. One part of this work investigated the faith and impact of oligosaccharide derived Amadori products during small intestinal carbohydrate digestion. Due to their structural similarity with known glycosidase inhibitors, an inhibitory action of Amadori products towards carbohydrate digestions was assumed. The other part dealt with fructosamine-3-kinase (FN3K) and its related protein (FN3K-RP) from human erythrocytes. Such ketosamine kinases are regarded as protein repair enzymes, maybe even an enzymatic defence against glycation in vivo. While deglycating protein bound Amadori products, however, they produce highly reactive 1,2-dicarbonyl compounds, which can lead to further protein damage. It is unclear, whether the ketosamine kinase action prevents or supports the pathophysiological effects of glycation. This work studied the substrate specifity of ketosamine kinases with a variety of Amadori products, which could result in inhibitors for further enzyme characterisation or even pharmaceutical uses. Further, the variability of both enzyme activities in a cohort of 100 subjects was examined. As a model for human small intestinal carbohydrate digestion, a Caco-2 cell monolayer was employed. Their sucrase-isomaltase is able to hydrolyse the alpha-glucosidic linkage in Amadori products of maltose and maltotriose with lysine, as well as in maltulose. Despite their amino group, those amadori products inhibited maltose hydrolysis merely weakly as competing substrates. Lactulosyl lysine on the other hand could not be hydrolysed by Caco-2 lactase. Tagatosyl lysine and the Heyns products glucosyl lysine and mannosyl lysine showed weak inhibition of lactose hydrolysis. All observed inhibitory effects are probably too weak to be of importance during carbohydrate digestion in vivo. Deoxypiperidinofructose was identified as a competitive inhibitor of FN3K (Kic 0,006 mM). FN3K acted rather non-specific towards Amadori products of different amines, except aromatic amines. FN3K-RP showed much higher activity in erythrocytes than FN3K, although its activity could not be inhibited selectively. Both enzyme activities vary among 100 subjects, with a range of 3 to 12 mU/g hemoglobin for FN3K and 60 to 135 mU/g hb for FN3K and FN3K-RP together. Relations of ketosamine kinase activity in erythrocytes with renal diseases, familial diabetes mellitus and familial cardiovascular events seem to exist. Thus, investigating the physiological impact of ketosamine kinases is necessary.

Charles University Faculty of Pharmacy in Hradec Králové Department of Pharmacology & Toxicology Student: Martin Huličiak Supervisor: PharmDr. Lukáš Červený, Ph.D Title of diploma thesis: Study of interactions of antiviral drugs with intestinal drug efflux ABC transporters P-gp, MRP2 and BCRP are efflux transporters, members of the family of ATP binding cassette (ABC) transporters. These transporters are located on the apical membrane of the intestinal epithelium, where they may limit absorption of orally administered drugs. Study of drug interactions with/on intestinal efflux transporters is necessary to provide safe and effective treatment. The Caco-2 cell line is FDA recommended in vitro model of intestinal barrier and it is used for bidirectional testing of substrates and inhibitors of ABC transporters in preclinical research. However, this methodology has several shortcomings, so the need of introduction of new experimental models is increasing and the ex vivo method based on human or rat intestine is a promising option. Precision-cut intestinal slices (PCIS) represent a mini-model of the organ and contain all types of cells of the tissue. We used both in vitro model using Caco-2 cell monolayers for drug transport study and in our lab established ex vivo method of PCIS for accumulation study...

Neste trabalho, esclarecemos tópicos da patogenicidade de EIEC que sustentam a sua menor virulência quando comparada à S. flexneri, e mostramos a importância das células dendríticas (CD) nesse processo. Estudou-se o comportamento de EIEC e S. flexneri quando em contato com células Caco-2, avaliando-se uma cinética de expressão dos genes envolvidos na invasão e disseminação bacteriana. Em geral, todos os genes foram menos expressos em EIEC, fato corroborado pelo fenótipo de disseminação bacteriana, onde EIEC foi menos eficiente do que Shigella. Também foi avaliada a modulação da resposta inflamatória de células dendríticas intestinais murinas pela produção de citocinas, expressão de moléculas co-estimulatórias e apresentação de antígenos, após desafio das células com as bactérias. Os resultados sugerem que EIEC induz a uma resposta protetora ao hospedeiro, enquanto que Shigella estaria \"driblando\" o sistema imune, além de provavelmente super-estimular o sistema imune adaptativo, fato que poderia levar a um agravamento da doença. As ações integradas das células Caco-2, células dendríticas e estímulos bacterianos foram estudadas em co-cultura celular. Observou-se que EIEC e suas proteínas secretadas induzem a migração das CDs ao compartimento apical da co-cultura; nada foi observado quando o desafio se deu com Shigella. Também foram avaliadas as concentrações de citocinas inflamatórias no microambiente infeccioso formado. A citocina TNF-α, bem como CCL20 e MCP-1 foram mais proeminentes após estímulo com EIEC, fato que poderia explicar parcialmente a migração das CDs ao lado apical da co-cultura após estímulo com EIEC e suas proteínas secretadas. Nossas evidências experimentais indicam que a doença desencadeada por EIEC é mais restrita a um determinado local da infecção, ou seja, não é capaz de se disseminar a ponto de estender a lesão tecidual de forma mais drástica, como Shigella. Esse fenômeno pode estar associado à menor expressão de seus dos fatores de virulência e à resposta imune inata induzida no sítio de infecção, o que levaria, fatalmente, à resolução da doença. / In this study, we clarify topics of pathogenicity from EIEC that support its lower level of virulence when it is compared to S. flexneri, and we have shown the importance of dendritic cells (DC) in this process. We studied the conduct of EIEC and S. flexneri when they were in contact with Caco-2 cells and we analyzed the kinetics of the genes expression that was involved in the spread and invasion of the bacteria. In general, all genes were expressed less in EIEC, as demonstrated by the phenotype of the bacterial spread, where EIEC was less efficient than Shigella. We also analyzed the modulation of the inflammatory response by the murine intestinal dendritic cells by the production of cytokine, expression of co-stimulators molecules and antigens presentation, after the interaction of the cells with the bacteria. The results showed that EIEC induces a response that protects the host while Shigella manipulate the host intestinal innate and adaptive immune system and it probably over-stimulates the adaptive immune system which could let the disease worse. The integrated actions of Caco-2 cells, dendritic cells and bacterial stimulus, were studied in a co-culture cell. We observed that EIEC and its secreted proteins induce the migration of the DCs to the apical compartment of the co-culture; nothing was observed related to Shigella. We also evaluated the concentrations of the inflammatory cytokines at the infective micro environment that was formed. The cytokine TNF-α, as CCL20 and MCP-1 were more prominent after been stimulated with EIEC, a fact that could partially explain the migration of DCs to the apical side of the co-culture after the stimulus with EIEC and its secreted proteins. Our experimental evidence shows that the disease triggered by the EIEC is more restricted at a definite infection place, which means that it is not capable of disseminating beyond a certain point to extend the tissue\'s injury and let it worsen, as Shigella do. This phenomenon can be associated with the lower level of expression of its virulence factors and to the immune response induced in the infection site, what could finally lead to the eradication of the disease.

Les céréales et les produits issus de leur transformation sont susceptibles d’être contaminés par des espèces fongiques capables de produire des mycotoxines. L’Homme est ainsi exposé tout au long de sa vie à travers son alimentation à ces contaminants naturels, généralement à de faibles doses et en mélange. Cependant, l’incidence de la présence simultanée de ces toxines sur notre santé, à court terme comme à plus long terme, ainsi que les mécanismes responsables de leur toxicité sont encore peu ou mal caractérisés. L’utilisation de modèles cellulaires humains pertinents et adaptés est particulièrement importante pour de telles études. L’épithélium intestinal et le système immunitaire, qui constituent la première barrière de défense de l’hôte suite à l’ingestion de contaminants alimentaires, ainsi que le foie, de par son rôle majeur dans la biotransformation des xénobiotiques, représentent des modèles d’étude pertinents en toxicologie. Dans le cadre de cette étude, des modèles cellulaires humains d’origine intestinale (Caco-2), immunitaire (THP-1) et hépatique (HepaRG) ont été employés pour évaluer le risque associé à la co-exposition aux mycotoxines de Fusarium (appelées fusariotoxines) qui sont parmi les plus problématiques dans nos régions. Différents types d’interactions, tels que de l’antagonisme et du synergisme, ont pu être observés sur la viabilité cellulaire en fonction de la nature du mélange, des doses testées, de la lignée cellulaire étudiée et du modèle mathématique utilisé pour prédire les effets combinés. Des interactions ont également été observées à l’échelle moléculaire, les effets des mélanges étant très différents de ceux induits par les toxines individuellement sur le protéome des cellules. D’autres résultats obtenus interrogent sur la façon dont les mycotoxines déclenchent réellement la réponse cellulaire. De plus, les interactions entre cellules cocultivées semblent capables de modifier la réponse cellulaire suite à l’exposition à ces toxines. Ces résultats soulignent l’importance de développer des modèles in vitro de plus en plus sophistiqués et s’approchant des conditions in vivo pour permettre une meilleure caractérisation du risque « mycotoxine ». / Cereals and cereal-based products are susceptible to be contaminated by mycotoxin-producing fungi.Thus, through their diet, humans are exposed throughout their life to these natural food contaminants, mostly at low doses and in mixture. However, the health impact of the simultaneous exposure to these toxins, in acute and chronic conditions, as well as the mechanism related to their toxicity, are still poorly characterized. The use of relevant and suitable human cell models is therefore of particular importance for such studies. The intestinal epithelium and immune system, which constitute the first host defense barrier following the food contaminant uptake, as well as the liver, due to its major function in xenobiotic biotransformation, are relevant for toxicity studies. In the framework of study, the intestinal (Caco-2), immune (THP-1) and hepatic (HepaRG) human cell models were used for risk assessment associated with co-exposure to Fusarium mycotoxins (called fusariotoxins) which are the most problematic in our regions. Different type of interactions, such as antagonism and synergism, were observed on cell viability depending on the nature of the mixture, tested concentration, studied cell line and used mathematical model to predict the combined effects. Interactions were also highlighted at the molecular level, the effects of mixtures being very different from those induced by the toxins alone on the cell proteome. Other results raised the question about how mycotoxins actually trigger the cellular response. In addition, cell-cell interactions in co-cultured systems appeared to modify the cellular response following exposures to these toxins. Overall, the obtained results highlighted the relevance of developing in vitro models increasingly sophisticated and closer to in vivo conditions to allow for a better characterization of the "mycotoxin" risk.