The availability of several methods to unambiguously mark individual cells has strongly fostered the understanding of clonal developments in hematopoiesis and other stem cell driven regenerative tissues. While cellular barcoding is the method of choice for experimental studies, patients that underwent gene therapy carry a unique insertional mark within the transplanted cells originating from the integration of the retroviral vector. Close monitoring of such patients allows accessing their clonal dynamics, however, the early detection of events that predict monoclonal conversion and potentially the onset of leukemia are beneficial for treatment. We developed a simple mathematical model of a self-stabilizing hematopoietic stem cell population to generate a wide range of possible clonal developments, reproducing typical, experimentally and clinically observed scenarios. We use the resulting model scenarios to suggest and test a set of statistical measures that should allow for an interpretation and classification of relevant clonal dynamics. Apart from the assessment of several established diversity indices we suggest a measure that quantifies the extension to which the increase in the size of one clone is attributed to the total loss in the size of all other clones. By evaluating the change in relative clone sizes between consecutive measurements, the suggested measure, referred to as maximum relative clonal expansion (mRCE), proves to be highly sensitive in the detection of rapidly expanding cell clones prior to their dominant manifestation. This predictive potential places the mRCE as a suitable means for the early recognition of leukemogenesis especially in gene therapy patients that are closely monitored. Our model based approach illustrates how simulation studies can actively support the design and evaluation of preclinical strategies for the analysis and risk evaluation of clonal developments.

Le centromère est le site chromosomal où le kinetochore se forme, afin d’assurer une ségrégation fidèles des chromosomes et ainsi maintenir la ploïdie appropriée lors de la mitose. L’identité du centromere est héritée par un mécanisme épigénétique impliquant une variante de l’histone H3 nommée centromere protein-A (CENP-A), qui remplace l’histone H3 au niveau de la chromatine du centromère. Des erreurs de propagation de la chromatine du centromère peuvent mener à des problèmes de ségrégation des chromosomes, pouvant entraîner l’aneuploïdie, un phénomène fréquemment observé dans le cancer. De plus, une expression non-régulée de CENP-A a aussi été rapportée dans différentes tumeurs humaines. Ainsi, plusieurs études ont cherchées à élucider la structure et le rôle de la chromatine contenant CENP-A dans des cellules en prolifération. Toutefois, la nature moléculaire de CENP-A en tant que marqueur épigénétique ainsi que ces dynamiques à l'extérieur du cycle cellulaire demeurent des sujets débat. Dans cette thèse, une nouvelle méthode de comptage de molécules uniques à l'aide de la microscopie à réflexion totale interne de la fluorescence (TIRF) sera décrite, puis exploitée afin d'élucider la composition moléculaire des nucléosomes contenant CENP-A, extraits de cellules en prolifération. Nous démontrons que les nucléosomes contenant CENP-A marquent les centromères humains de façon épigénétique à travers le cycle cellulaire. De plus, nos données démontrent que la forme prénucléosomale de CENP-A, en association avec la protéine chaperon HJURP existe sous forme de monomère et de dimère, ce qui reflète une étape intermédiaire de l'assemblage de nucléosomes contenant CENP-A. Ensuite, des analyses quantitatives de centromères lors de différenciation myogénique, et dans différents tissus adultes révèlent des changements globaux qui maintiennent la marque épigénétique dans une forme inactive suite à la différentiation terminale. Ces changements incluent une réduction du nombre de points focaux de CENP-A, un réarrangement des points dans le noyau, ainsi qu'une réduction importante de la quantité de CENP-A. De plus, nous démontrons que lorsqu'une dédifférenciation cellulaire est induite puis le cycle cellulaire ré-entamé, le phénotype "différencié" décrit ci-haut est récupéré, et les centromères reprennent leur phénotype "prolifératif". En somme, cet oeuvre décrit la composition structurale sous-jacente à l'identité épigénétique des centromères de cellules humaines lors du cycle cellulaire, et met en lumière le rôle de CENP-A à l'extérieur du cycle cellulaire. / The centromere is a unique chromosomal locus where the kinetochore is formed to mediate faithful chromosome partitioning, thus maintaining ploidy during cell division. Centromere identity is inherited via an epigenetic mechanism involving a histone H3 variant, called centromere protein-A (CENP-A) which replaces histone H3 in centromeric chromatin. Defects in the centromeric chromatin can lead to missegregation of chromosomes resulting in aneuploidy, a ¬¬frequently observed phenomenon in cancer. Moreover, deregulated CENP-A expression has also been documented in a number of human malignancies. Therefore, much effort has been devoted to uncover the structure and role of CENP-A-containing chromatin in proliferating cells. However, the molecular nature of this epigenetic mark and its potential dynamics during and outside the cell cycle remains controversial. In this thesis, the development of a novel single-molecule imaging approach based on total internal reflection fluorescence and the use of this assay to gain quantitative information about the molecular composition of CENP-A-containing nucleosomes extracted from proliferating cells throughout the cell cycle as well as the dynamics and cellular fate of CENP-A chromatin in terminal differentiation are described. Here, we show that octameric CENP-A nucleosomes containing core Histones H2B and H4 epigenetically mark human centromeres throughout the cell cycle. Moreover, our data demonstrate that the prenucleosomal form of CENP-A bound by the chaperone HJURP transits between monomeric and dimeric forms likely reflecting intermediate steps in CENP-A nucleosomal assembly. Moreover, quantitative analyses of centromeres in myogenic differentiation and adult mouse tissue sections revealed that centromeres undergo global changes in order to retain a minimal CENP-A epigenetic code in an inactive state, upon induction of terminal differentiation. These include a robust decrease in the number of centromeric foci, subnuclear rearrangement as well as extensive loss of CENP-A protein. Interestingly, we show that forced dedifferentiation under cell cycle reentry permissive conditions, rescued the above-mentioned phenotype concomitantly with the restoration of cell division. Altogether, this work delineates the structural basis for the epigenetic specification of human centromeres during the cell cycle and sheds light on the cellular fate of the CENP-A epigenetic code outside the cell cycle.

Les phosphates de calcium tels que le β-TCP sont utilisés depuis des décennies comme substitut osseux synthétique. Leurs bonnes propriétés chimiques et leur comportement analogue au tissu osseux in vivo et in vitro peuvent être améliorés par la technique de mise en forme employée. Il est aujourd'hui largement admis qu'une architecture poreuse optimisée aura un impact positif sur la bioactivité du matériau. Cette étude vise à étudier les liens existant entre une structure macroporeuse en β-TCP et la prolifération et différenciation cellulaire. Le β-TCP est fabriqué par précipitation aqueuse. Les paramètres de synthèse sont optimisés afin d'avoir un produit répondant aux normes ISO 13175 et 13779. Trois méthodes de mise en forme ont été choisies pour leur aptitude à générer une macroporosité originale. L'imprégnation d'une structure polymérique par une suspension génère un réseau de pores sphériques (PS), la stéréolithographie génère des pores cubiques interconnectés (3D) et la congélation orientée produit un réseau de pores tubulaires ellipsoïdaux parallèles au sens de la congélation (CO). Deux tendances émergent des cultures de cellules souches mésenchymateuses humaines: PS et 3D favorisent la prolifération alors que CO favorise la pénétration cellulaire et l'activité de la phosphatase alcaline. Cette dernière est favorisée par le β-TCP et cette aptitude est améliorée par la congélation orientée. Cela pourrait s'expliquer par l'état d'avancement de la différenciation cellulaire: les cellules sur les échantillons CO semblent être à un stade de différenciation plus avancé. Des essais complémentaires sur l'expression de gènes clés sont en cours pour vérifier cette hypothèse. / Calcium phosphates such as β-TCP have been used for decades as synthetic bone substitutes. Its good chemical properties and its similar behavior to that of the bone in vivo and in vitro can be enhanced by the chosen shaping method. It is nowadays largely accepted that an optimized porous architecture will have a positive impact on the material's bioactivity. This study aims at studying the links between a porous architecture and cell proliferation and differentiation. β-TCP was manufactured by aqueous precipitation. Synthesis parameters were optimized in order to get a product complying with ISO 13779 and 13175 requirements. Three shaping methods were chosen for their ability to generate original structures. The impregnation of a polymeric scaffold yields a network of interconnected spherical pores (PS), stereolithography yields a network of interconnected cubical pores (3D) and ice templating yields a network of parallel ellipsoidal channel-like structure (CO). Two different trends emerged from the human mesenchymal stem cell culture: PS and 3D favored cell proliferation whereas CO promoted cell penetration and alkaline phosphatase activity. The latter is stimulated by β-TCP and this ability is enhanced by freeze casting. This could be explained by the state of cell differentiation: cells on CO samples seem to be far more differentiated than the other ones. However the study of key genes expression is needed to confirm this hypothesis.

As doenças cardiovasculares representam a maior causa de mortalidade a nível mundial. Desde o conhecimento da importância da mitocôndria no metabolismo do cardiomiócito, alterações no funcionamento desta organela têm sido associadas a um dos principais causadores do infarto do miocárdio e consequente morte celular. O cofator de transcrição PGC-1alfa tem sido alvo de diversos estudos relacionados com o metabolismo celular devido à sua forte participação na biogênese mitocondrial. Considerando a limitação de material biológico para o estudo de doenças cardíacas, muito se tem investido no estudo de células-tronco pluripotentes induzidas (iPSCs). Esta tese teve como principal objetivo a avaliação dos efeitos da variação da expressão de PGC-1alfa em iPSCs e na sua diferenciação em cardiomiócitos. Após estabelecimento de um protocolo de reprogramação celular, em que ocorre geração de iPSCs a partir de fibroblastos humanos, induzimos a inibição da expressão de PGC-1alfa em 50% e 70% pelo uso de vetores lentivirais, e analisamos o estado de pluripotência através da avaliação de expressão genica e proteica dos principais marcadores - SSEA4, TRA-1-60, OCT4, NANOG, SOX2, REX1, TRA-1-81. Não observamos diferenças significativas no conteúdo destes marcadores entre os clones de iPSC controle e inibidos. Estabelecemos um protocolo de diferenciação de iPSCs em cardiomiócitos com elevada taxa de reprodutibilidade, através da adaptação de protocolos descritos na literatura, e submetemos estas iPSCs à diferenciação. As células geradas pela diferenciação do clone controle apresentaram características típicas de cardiomiócito: contratilidade e alta expressão molecular de troponina T e troponina I. Em contraste, as células com 70% de inibição de PGC-1alfa se mostraram incapazes de contrair e com baixa expressão de troponina. Através de uma análise dos níveis de expressão genica e proteica de diversos marcadores expressos durante o processo de diferenciação (T, NKX2.5, MIXL1, MYL7, ISL1), observamos que o clone com maior inibição de PGC-1alfa apresentou sempre níveis de expressão diminuídos em relação aos clones controle. Em conclusão, podemos afirmar que o PGC-1alfa não interfere com as características de auto-renovação e pluripotência das iPSCs mas possui um papel essencial na diferenciação de células-tronco pluriotentes induzidas em cardiomiócitos. Os resultados obtidos contribuem para informações preliminares acerca do desenvolvimento de iPSCs com inibição da expressão de PGC-1alfa durante a diferenciação cardíaca, mas estudos relativos ao potencial papel deste cofator durante o desenvolvimento cardíaco in vivo ainda precisam ser aprofundados, utilizando outros modelos de estudo / Cardiovascular diseases are the leading cause of mortality worldwide. Since the knowledge of the importance of mitochondria in the cardiomyocyte metabolism, changes in the functioning of this organelle has been associated with one of the main causes of myocardial infarction and subsequent cell death. The transcriptional cofactor PGC-1alpha has been subjected to several studies related to cell metabolism due to its strong involvement in mitochondrial biogenesis. Considering the limitations of biological material in the study of heart disease, there has been a lot of investment in the study of induced pluripotent stem cells (iPSCs). The main objective of this thesis was to evaluate the effects of the variation in expression of PGC-1alpha in iPSCs and it\'s differentiation in cardiomyocytes. After the estabilshment of a cellular reprogramming protocol, where iPSCs is generated from human fibroblasts, the expression of PGC-1alpha was induced by 50% and 70% with the use of lentiviral vectors and the state of pluripotency was determined by analyzing the gene and protein expression of the main markers - SSEA4, TRA- 1-60, OCT4, NANOG, SOX2, REX1, TRA- 1- 81. There were no significant differences observed in the content of these markers between the iPSC clones control and inhibited. A protocol for the differentiation of iPSCs into cardyomyocites was established with a high reproducibility rate, by adapting existing protocols in the general literature, submiting these iPSCs into diferentiation. The cells generated from the differentiation of the control clone showed typical characteristis of cardiomyocytes: contractility and high molecular expression of troponin T and troponin I. In contrast, the cells with 70% inhibition PGC-1alpha were unable to contract and had low troponin expression. Through an analysis of gene expression and protein levels of several markers expressed during the differentiation process (T, Nkx2.5, MIXL1, MYL7, ISL1), the clone with greater inhibition of PGC-1alpha always showed decreased expression levels compared to control clones. In conclusion, we can say that the PGC-1alpha does not interfere with the characteristics of self-renewal and pluripotency of iPSCs but has an essential role in the differentiation of pluripotent stem cells induced into cardiomyocytes. These results were obtained thanks an original approche based on iPSC technology enabling genetic modifications of the cells and controled differentiation into cardiomyocytes, but the potential role of PGC-1alpha on in vivo cardiac development or cardiomyocytes maturation remaisn to be evaluated using other models

O sistema imune dos mamíferos forma uma complexa rede de populações celulares especializadas e vias de sinalização extremamente reguladas. Linfócitos T naïve podem diferenciar-se após encontro com o antígeno em pelo menos duas sub-populações distintas, Th1 ou Th2, sendo que o papel do circuito p38MAPK/MSK1 durante este período inicial de ativação não é completamente entendido. Linfócitos T CD4+ naïve humanos foram estimulados in vitro em condições não-polarizantes (Tnp), Th1 ou Th2, na presença de inibidor específico da p38MAPK. As células ativadas e mantidas em condições diferenciadoras Th1 ou Th2 na presença do inibidor SB203580, apresentaram menor produção de IFN-<font face=\"symbol\">g e maior produção de IL-4. Através do bloqueio do RNAm da MSK1 por siRNA, observamos o mesmo efeito resultante da inibição da p38MAPK, fato que foi confirmado em experimentos com linfócitos T de camundongos MSK1-deficientes. A alteração da produção das citocinas características de cada população parece ser decorrente da alteração da expressão da IL12R<font face=\"symbol\">b2 e IL4R-<font face=\"symbol\">a dos receptores de citocinas da IL-12 e IL-4, respectivamente. Desta forma, os nossos dados sugerem que o circuito p38MAPK/MSK1 participa do processo de ativação dos linfócitos T mantidos em condições diferenciadoras Th1/2. / The mammalian immune system form a complex network of highly regulated signaling pathways and populations of specialized cells. After meeting with the antigen naïve T cells differentiate into at least two distinct sub-populations, Th1 or Th2, and the role of the circuit p38MAPK/MSK1 during this initial period of activation is not completely understood. Human CD4+ T lymphocytes were stimulated in vitro under non-polarized, Th1 or Th2 conditions, in the presence of a specific p38MAPK inhibitor. The cells activated and differentiated under Th1 or Th2 condition in the presence of inhibitor SB203580, had decreased production of IFN-<font face=\"symbol\">g and increased IL-4. By silencing MSK1 through siRNA, we observed the same effect due to inhibition of p38MAPK, an observation that was confirmed in experiments with T lymphocytes from mice deficient of MSK1. The change in the production of cytokines appears to be a result of altered expression of IL12R-<font face=\"symbol\">b2 and IL4R<font face=\"symbol\">a receptors of the cytokines IL-12 and IL-4, respectively. Taken together, our data suggest that the circuit p38MAPK/MSK1 plays a key role in the activation of human T cells maintained under Th1/2 differentiation conditions.

O desenvolvimento do músculo esquelético em vertebrados é um processo bem organizado que envolve diversos eventos, inicia-se na fase embrionária e continua durante toda a vida. Esse processo biológico requer uma adequada sinalização celular e é regulado por inúmeros genes. Em busca do entendimento dos mecanismos moleculares envolvidos na determinação do desenvolvimento e crescimento do tecido muscular foi acompanhada a expressão gênica dos fatores miogênicos (MyoD, Myf5, Miogenina e MRF4); Pax7; Miostatina; e da via de ação Shh (Shh, Ptch1, Smo, Pka, Sufu, Gli2 e Gli3) na musculatura peitoral de duas linhagens de galinhas de composições genéticas distintas. Uma linhagem de corte, selecionada para maior deposição de massa muscular, e outra de postura, caracterizada pela baixa taxa de crescimento e pouca massa muscular. Foram utilizados 90 animais distribuídos nas duas linhagens e cinco estádios de desenvolvimento: 9 e 17 dias da fase embrionária e 1, 21 e 42 dias da fase pós-eclosão. A expressão gênica foi analisada por PCR quantitativa em tempo real. Os genes Myf5, Miogenina, MRF4, Pax7, Shh e Ptch1 foram diferencialmente expressos na ontogenia e entre as linhagens. Já os genes MyoD, Miostatina, Smo, Pka, Sufu, Gli2 e Gli3 foram diferencialmente expressos somente na ontogenia. Foi possível traçar o perfil de expressão dos genes ao longo das fases de desenvolvimento. Os genes MyoD, Myf5 e Pax7 foram mais expressos na fase embrionária, onde há maior proliferação celular. Durante as fases estudadas, os genes da Miogenina e MRF4 apresentaram uma auto-regulação entre eles, indicando a ocorrência do processo de diferenciação celular. O gene da Miostatina demonstrou estar inibindo o crescimento muscular nos dias que antecedem a eclosão. Os genes da via de ação Shh foram mais expressos nas idades embrionárias, onde esta via age como um fator de sobrevivência e proliferação celular e menos expressos nas idades posteriores a eclosão, provavelmente, para que haja o processo de diferenciação dos mioblastos. Verificou-se que esses genes foram diferencialmente expressos sendo coordenados espaço-temporalmente, permitindo assim um ajuste sutil entre proliferação e diferenciação das células musculares, colaborando para as diferenças fenotípicas observadas entre as linhagens. / The development of skeletal muscle in vertebrates is a well-organized process that involves several events, initiating in the embryonic phase and continuing throughout life. This biological process requires a proper cell signaling and is regulated by numerous genes. Aiming to understand the molecular mechanisms involved in determining the development and growth of muscle tissue, we monitored gene expression of myogenic factors (MyoD, Myf5, Myogenin and MRF4); Pax7; Myostatin; and Shh pathway (Shh, Ptch1, Smo, Pka, Sufu, Gli2 and Gli3) in the pectoralis muscle of two strains of poultry from different genetic compositions. A broiler, selected for increased deposition of muscle mass, and a layer, characterized by slow growth and low muscle mass. We used 90 animals divided into two lines and five stages of development: 9 and 17 days of embryo and 1, 21 and 42 days post-hatching. Gene expression was analyzed by quantitative real-time PCR. The genes Myf5, Myogenin, MRF4, Pax7, Shh and Ptch1 are differentially expressed in ontogeny and among strains. The genes MyoD, myostatin, Smo, Pka, Sufu, Gli2 and Gli3 were differentially expressed only in ontogeny. It was possible to design the gene expression profile throughout the different developmental stages. The genes MyoD, Myf5 and Pax7 were more expressed in the embryo, where there is greater cell proliferation. During the four phases, the genes MRF4 and Myogenin showed self-regulation among them, indicating the occurrence of the cell differentiation process. The myostatin gene proved to be inhibiting muscle growth in the days before hatching. The genes of the Shh action were more highly expressed in embryonic ages, where this pathway acts as a survival factor and cellular proliferation, and less expressed in later times after hatching, probably to allow for the differentiation of myoblasts. We found that these genes were differentially expressed being coordinated in space and time, allowing, thus, a subtle tuning between proliferation and differentiation of muscle cells, contributing to the phenotypic differences observed between strains.

La maladie coeliaque réfractaire de type II (MCRII) est une complication sévère de la maladie coeliaque caractérisée par l’émergence dans l’épithélium intestinal d’une population clonale de cellules innées lymphoïdes (IE-ILC) avec un phénotype inhabituel. Nos travaux montrent en effet que ces IE-ILC ont un phénotype mixte avec des caractéristiques à la fois de lymphocytes T (LT) et de cellules NK, puisqu’elles expriment des récepteurs NK et contiennent les chaines du complexe CD3 en intracellulaire et des réarrangements du récepteur T. En outre, des travaux précédents du laboratoire ont montré que l’interleukine 15 (IL-15), produite en excès par les entérocytes des patients MCRII, joue un rôle central en permettant la survie de ces lymphocytes anormaux et de ce fait leur accumulation progressive dans l’intestin. Le premier objectif de ma thèse a été de comprendre l’ontogénie des IE-ILC chez l’homme. Nous avons démontré qu’une population «polyclonale» d’IE-ILC, possédant des caractéristiques similaires à ceux des lymphocytes clonaux de MCRII, est présente dans l’épithélium intestinal des sujets sains. En outre, ces cellules prédominent dans l’épithélium intestinal des très jeunes enfants (<1ans) et des patients allo-greffés après une chimiothérapie. Nous avons montré que la différenciation des IE-ILC peut–être récapitulée in vitro à partir de cellules souches hématopoïétiques (CSH), en combinant un signal NOTCH et IL-15; le signal NOTCH initie un programme T qui est interrompu par l’IL-15, conduisant à la reprogrammation des cellules vers une différenciation NK. Nous avons aussi montré que l’effet de l’IL-15 résulte de l’induction de la sérine protéase Granzyme B, qui clive la protéine NOTCH en fragments dépourvus d’activité transcriptionnelle. Le deuxième objectif de mon travail a été d’identifier le site de la différenciation des IE-ILC. Thymus et épithélium intestinal expriment en effet des ligands de NOTCH ainsi que de l’IL-15. Cette partie du travail a été conduite chez la souris. Nous avons montré qu’une population d’IE-ILC similaire à celle observée chez l’homme est présente dans l’épithélium murin. L’étude de différentes souris mutantes nous a permis de démontrer sa dépendance stricte de l’IL-15. La réalisation de greffes de thymus, l’analyse de souris athymiques et le transfert de cellules de la moelle osseuse chez des souris immunodéficiences a permis d’exclure tout rôle du thymus dans la différenciation des IE-ILC, et de suggérer que ces cellules se différencient dans l’intestin avant la migration des lymphocytes T. Dans leur ensemble, ces résultats caractérisent une nouvelle population de cellules lymphoïdes innées et une voie originale de différenciation. Nos résultats éclairent un débat de longue date sur la différenciation extra-thymique des lymphocytes de l’épithélium. Nous montrons que la différenciation T peut être initiée dans l’épithélium intestinal mais que l’IL-15 bloque cette différenciation, ce qui conduit à la génération d’une population particulière de IE-ILC avec un phénotype mixte de LT et de NK. La présence des IE-ILC chez les très jeunes enfants et chez les patients greffés suggère un rôle possible dans les défenses de l’épithélium intestinal avant l’activation du système immunitaire adaptatif et la migration intraépithéliale des LT. / Refractory celiac disease type II (RCDII) is a rare but severe complication of celiac disease characterized by the appearance in gut epithelium of clonal population of innate lymphoid cells (IE-ILC) with atypical features. Our work shows that IE-ILC have mixed phenotype close both to T cells and NK cells. Indeed, IE-ILC express NK markers, intracellular CD3 chains and exhibit T cell rearrangement. Moreover, previous data from the laboratory have shown that interleukin 15 (IL-15), a cytokine overexpressed in the gut of RCDII patients, plays a key role in survival of clonal IE-ILC1 and therefore promotes their accumulation in the gut epithelium. The first objective of my thesis has been to understand the ontogeny of IE-ILC in humans. We have demonstrated that polyclonal IE-ILC sharing similar features with clonal IE-ILC are present in the gut of healthy control. In addition, IE-ILC are preponderant in the gut epithelium of young children (<1year) and of grafted patients after chemotherapy. We have shown that differentiation of IE-ILC can be recapitulated in vitro from hematopoietic stem cells (HSC) by combining both NOTCH signal and IL-15. Indeed, NOTCH signal initiates T cell program, which is blocked by IL-15, reprogramming these cells toward the NK lineage. Moreover, we have shown that Granzyme B, a serine protease induced by IL-15, cleaves the NOTCH protein into a transcriptionnally inactive peptide. The second objective of my work has been to determine the site of differentiation of IE-ILC. Thymus and gut epithelium express both NOTCH ligands and IL-15. This question has to be addressed in mouse. We have shown that the mouse gut epithelium contains the counterpart of human IE-ILC1. We first confirmed that mouse IE-ILC1 require IL-15 for their differentiation and or survival using IL-15 deficient mice. Thymus graft experiment, analysis of athymic mice (nude) and HSC transplantation in empty hosts suggested that IE-ILC1 differentiate in the gut epithelium before immigration of T cells from thymus. In summary, our results describe a novel subset of IE-ILC1 together with their novel unconventional mechanism of differentiation. Our data allow to revisit the long time controversy on extra-thymic T cell differentiation in the gut. We have demonstrated that T cell program can be initiated in the gut epithelium but IL15-induced Granzyme B blocks this program and permits the generation of unconventional IE-ILC with mixed T cell and NK cell features. Because IE-ILC1 are preponderant in the gut epithelium of young children and of patients with recent bone marrow transplantation, we suggest that IE-ILC1 can play a major role in gut defense before activation of the gut adaptative immune system activate and migration of thymus-derived T cells into the gut epithelium.

O tratamento minimamente invasivo tem sido cada vez mais empregado no tratamento das lesões de cárie dental, especialmente em crianças jovens. Com isso, a remoção do tecido cariado pelo método químico-mecânico permite uma maior conservação das estruturas dentais saudáveis. O Papacárie Duo® é um material de fácil aplicação e possui propriedades bactericidas e anti-inflamatórias. Este material é aplicado sobre a dentina cariada, a fim de promover um amolecimento desta, facilitando a sua remoção. Os efeitos celulares de Papacárie Duo® são pouco conhecidos, dessa forma esta pesquisa teve como objetivo avaliar o efeito do Papacárie Duo® em células indiferenciadas da polpa dental (Capítulo 1) e a capacidade do Papacárie Duo® induzir a ativação de macrófagos e a síntese de mediadores inflamatórios (Capítulo 2). O Papacarie Duo® foi preparado nas concentrações de 0,5 e 5% por meio de diluição seriada, a partir do gel obtido comercialmente. Células OD-21 e macrófagos J774.1 foram mantidas em cultura com os diferentes tratamentos por um período de estimulação de 24 horas para realização do teste de citotoxicidade (Ensaio LDH) e por 36 horas para avaliação da proliferação celular (Ensaio Colorimétrico MTT). A seguir foi realizada avaliação da expressão gênica relativa dos genes Ibsp, Runx2 e Spp1 em células OD-21; e dos genes Il10, Mmp9, Ptgs2 e Tnf em células J774.1, pelo método de transcrição reversa e reação em cadeia de polimerase em tempo real (qRT-PCR), utilizando o sistema TaqMan® após estimulação o período de 24 horas. O Papacárie Duo® a 5% foi citotóxico às células da polpa dental e inibiu a proliferação celular, assim como a expressão de Runx2 e Ibsp. Porém em ambas as concentrações estimulou a expressão de Spp1, a qual foi maior na concentração de 5%. Em macrófagos, o Papacárie Duo® foi citotóxico na concentração de 5%, mas não influenciou a proliferação celular em nenhuma das concentrações (0,5 e 5%). O LPS inibiu a proliferação celular na presença ou não de Papacárie Duo®, sem apresentar citotoxicidade. O Papacárie Duo® induziu a expressão de Ptgs2 e Il10, sem alterar Tnf e Mmp9. Portanto, o Papacárie Duo® foi citotóxico, dependendo da concentração, e apresentou efeito inibitório na diferenciação de células da polpa (OD-21), sem entretanto influenciar a proliferação celular. Papacárie Duo® não impediu a proliferação de macrófagos, porém foi citotóxico na concentração de 5% mas não à 0,5%. Adicionalmente, Papacárie Duo® modulou a ativação de macrófagos pela indução da expressão de Ptgs2 e Il10, sem alterar a expressão de Tnf e Mmp9. / The minimally invasive treatment has been increasingly used in the treatment of dental caries, particularly in young children. Thus, the removal of carious tissue by chemical-mechanical method allows greater conservation of healthy tooth structure. The Papacárie Duo® is an easily applied material, and has bactericidal and anti-inflammatory properties. This material is applied over the carious dentin in order to promote a softening thereof, facilitating its removal. The cellular effects of Papacárie Duo® are little known, therefore this research was to evaluate the effect of Papacárie Duo® in undifferentiated cells from dental pulp (Chapter 1) and the capacity of Papacárie Duo® to induce macrophage activation and synthesis inflammatory mediators (Chapter 2). The Papacárie Duo® was prepared at concentrations of 0.5 and 5% by serial dilution from the gel obtained commercially. OD-21 cells and J774.1 macrophages were maintained in culture with the different treatments for a period of 24 hours to perform the cytotoxicity assay (LDH assay) and for 36 hours for evaluation of cell proliferation (MTT colorimetric assay). The following, was carried out the assessment of the relative gene expression of Ibsp, Runx2 and Spp1 genes in OD-21 cells, and Il10, Mmp9, Tnf and Ptgs2 in J774.1 cells by reverse transcription method and reaction in real time polymerase chain reaction (qRT-PCR) using the TaqMan system after the stimulation period of 24 hours. The 5% Papacárie Duo® was cytotoxic to cells of dental pulp and inhibited cell proliferation and the expression of Runx2 and Ibsp. However, in both concentrations stimulated the expression of Spp1, which was higher at a concentration of 5%. In macrophages, the Papacárie Duo® was cytotoxic at concentrations of 5%, but did not affect the cell proliferation in any of the concentrations (0.5 and 5%). LPS inhibited cell proliferation in the presence or absence of Papacárie Duo® without giving cytotoxicity. The Papacárie Duo® induced the expression of Ptgs2 and Il10, without changing Tnf and Mmp9. Therefore, the Papacárie Duo® was cytotoxic, depending on the concentration, and showed inhibitory effect on the differentiation of pulp cells (OD-21), but without influencing cell proliferation. Papacárie Duo® not prevent macrophage proliferation, but was cytotoxic at a concentration of 5% but not more than 0.5%. Additionally, Papacárie Duo® modulated the activation of macrophages by inducing Il10 and Ptgs2 expression without altering the expression of ,Tnf, and Mmp9.

As doenças cardiovasculares representam a maior causa de mortalidade a nível mundial. Desde o conhecimento da importância da mitocôndria no metabolismo do cardiomiócito, alterações no funcionamento desta organela têm sido associadas a um dos principais causadores do infarto do miocárdio e consequente morte celular. O cofator de transcrição PGC-1alfa tem sido alvo de diversos estudos relacionados com o metabolismo celular devido à sua forte participação na biogênese mitocondrial. Considerando a limitação de material biológico para o estudo de doenças cardíacas, muito se tem investido no estudo de células-tronco pluripotentes induzidas (iPSCs). Esta tese teve como principal objetivo a avaliação dos efeitos da variação da expressão de PGC-1alfa em iPSCs e na sua diferenciação em cardiomiócitos. Após estabelecimento de um protocolo de reprogramação celular, em que ocorre geração de iPSCs a partir de fibroblastos humanos, induzimos a inibição da expressão de PGC-1alfa em 50% e 70% pelo uso de vetores lentivirais, e analisamos o estado de pluripotência através da avaliação de expressão genica e proteica dos principais marcadores - SSEA4, TRA-1-60, OCT4, NANOG, SOX2, REX1, TRA-1-81. Não observamos diferenças significativas no conteúdo destes marcadores entre os clones de iPSC controle e inibidos. Estabelecemos um protocolo de diferenciação de iPSCs em cardiomiócitos com elevada taxa de reprodutibilidade, através da adaptação de protocolos descritos na literatura, e submetemos estas iPSCs à diferenciação. As células geradas pela diferenciação do clone controle apresentaram características típicas de cardiomiócito: contratilidade e alta expressão molecular de troponina T e troponina I. Em contraste, as células com 70% de inibição de PGC-1alfa se mostraram incapazes de contrair e com baixa expressão de troponina. Através de uma análise dos níveis de expressão genica e proteica de diversos marcadores expressos durante o processo de diferenciação (T, NKX2.5, MIXL1, MYL7, ISL1), observamos que o clone com maior inibição de PGC-1alfa apresentou sempre níveis de expressão diminuídos em relação aos clones controle. Em conclusão, podemos afirmar que o PGC-1alfa não interfere com as características de auto-renovação e pluripotência das iPSCs mas possui um papel essencial na diferenciação de células-tronco pluriotentes induzidas em cardiomiócitos. Os resultados obtidos contribuem para informações preliminares acerca do desenvolvimento de iPSCs com inibição da expressão de PGC-1alfa durante a diferenciação cardíaca, mas estudos relativos ao potencial papel deste cofator durante o desenvolvimento cardíaco in vivo ainda precisam ser aprofundados, utilizando outros modelos de estudo / Cardiovascular diseases are the leading cause of mortality worldwide. Since the knowledge of the importance of mitochondria in the cardiomyocyte metabolism, changes in the functioning of this organelle has been associated with one of the main causes of myocardial infarction and subsequent cell death. The transcriptional cofactor PGC-1alpha has been subjected to several studies related to cell metabolism due to its strong involvement in mitochondrial biogenesis. Considering the limitations of biological material in the study of heart disease, there has been a lot of investment in the study of induced pluripotent stem cells (iPSCs). The main objective of this thesis was to evaluate the effects of the variation in expression of PGC-1alpha in iPSCs and it\'s differentiation in cardiomyocytes. After the estabilshment of a cellular reprogramming protocol, where iPSCs is generated from human fibroblasts, the expression of PGC-1alpha was induced by 50% and 70% with the use of lentiviral vectors and the state of pluripotency was determined by analyzing the gene and protein expression of the main markers - SSEA4, TRA- 1-60, OCT4, NANOG, SOX2, REX1, TRA- 1- 81. There were no significant differences observed in the content of these markers between the iPSC clones control and inhibited. A protocol for the differentiation of iPSCs into cardyomyocites was established with a high reproducibility rate, by adapting existing protocols in the general literature, submiting these iPSCs into diferentiation. The cells generated from the differentiation of the control clone showed typical characteristis of cardiomyocytes: contractility and high molecular expression of troponin T and troponin I. In contrast, the cells with 70% inhibition PGC-1alpha were unable to contract and had low troponin expression. Through an analysis of gene expression and protein levels of several markers expressed during the differentiation process (T, Nkx2.5, MIXL1, MYL7, ISL1), the clone with greater inhibition of PGC-1alpha always showed decreased expression levels compared to control clones. In conclusion, we can say that the PGC-1alpha does not interfere with the characteristics of self-renewal and pluripotency of iPSCs but has an essential role in the differentiation of pluripotent stem cells induced into cardiomyocytes. These results were obtained thanks an original approche based on iPSC technology enabling genetic modifications of the cells and controled differentiation into cardiomyocytes, but the potential role of PGC-1alpha on in vivo cardiac development or cardiomyocytes maturation remaisn to be evaluated using other models

A dor neuropática após lesão da medula espinal é uma condição complexa que responde mal aos tratamentos convencionais. O transplante de células representa uma terapia promissora; no entanto, o tipo de célula ideal em termos de potencial neurogênico e eficácia contra a dor permanecem controversos. Assim, o objetivo do presente estudo foi avaliar a capacidade de células tronco neurais fetais (CTNf) em aliviar a dor crônica e, secundariamente, avaliar os efeitos na recuperação motora. Com este propósito, inicialmente foi realizado um piloto para definir o melhor modelo animal, no qual ratos Wistar foram submetidos à lesão medular traumática de intensidade leve ou moderada (altura do pêndulo 12,5mm e 25mm, respectivamente) utilizando o NYU Impactor. Os resultados indicaram que a lesão medular de intensidade moderada é um bom modelo para o estudo da dor neuropática central, pois, além de apresentar um déficit motor e um quadro álgico mais acentuado que os animais submetidos à lesão leve, os animais se mantiveram estáveis ao longo do estudo. Ademais, alterações sensoriais foram observadas desde os primeiros dias após a lesão e permaneceram por pelo menos oito semanas, viabilizando o objetivo do trabalho. Em vista do resultado do piloto, ratos Wistar foram submetidos à lesão medular de intensidade moderada; sete dias após a lesão medular iniciou-se a imunossupressão com ciclosporina, e dez dias após a lesão os animais receberam injeções intra-espinais de meio de cultivo (grupo sham) ou de CTNf extraídas das vesículas telencefálicas (grupo VT) ou da região ponto-bulbar ventral (grupo BV) de embriões E14 da mesma espécie. As avaliações sensitivas e motoras foram realizadas durante oito semanas. Posteriormente, as medulas espinais foram processadas para imunofluorescência e as CTNf transplantadas foram quantificadas por estereologia. Os resultados mostraram uma melhora da hiperalgesia térmica no grupo VT após a quinta semana de transplante (p < 0,001) e no grupo BV após a quarta semana (p < 0,001). Além disso, a alodínia mecânica melhorou nos grupos VT e BV na 8ª semana (VT p < 0,05 e BV p < 0,01 comparados com sham). Nenhuma recuperação motora significativa foi observada nos grupos tratados em relação ao grupo sham. A análise estereológica mostrou que ~70% das células VT e BV diferenciaram-se em neurônios NeuN+, com alta proporção de células encefalinérgicas e GABAérgicas no grupo VT (44% e 42%, respectivamente) e encefalinérgicas e serotoninérgicas no grupo BV (50% e 47%, respectivamente). Nosso estudo sugere que os precursores neuronais oriundos das VT e BV, uma vez implantados na medula espinal lesada, maturam em diferentes subtipos neuronais, principalmente GABAérgicos, serotoninérgicos e encefalinérgicos, e ambos precursores foram capazes de aliviar a dor, apesar de não haver recuperação motora significativa / Neuropathic pain after spinal cord injury (SCI) is a complex condition which responds poorly to usual treatments. Cell transplantation represents a promising therapy; nevertheless, the ideal cell type in terms of neurogenic potential and effectiveness against pain remains largely controversial. Thus, the objective of the present study was to evaluate the ability of fetal neural stem cells (fNSC) to relieve chronic pain and, secondarily, to evaluate the effects on motor recovery. For this purpose, a pilot was initially designed to define the best animal model; accordingly, Wistar rats were submitted to traumatic spinal cord injury of mild or moderate intensity (pendulum height 12.5mm and 25mm, respectively) using the NYU Impactor. The results indicated that spinal cord injury of moderate intensity is a good model for the study of central neuropathic pain, because in addition to a motor function deficit and painful sensation more pronounced than the animals submitted to mild injury, the animals remained stable throughout the study. Additionally, sensitive deficits were observed from the first days after the injury and lasted eight weeks, enabling the objective of the work. Based on the pilot result, Wistar rats were submitted to moderate spinal cord injury; seven days after spinal cord injury, immunosuppression with cyclosporine was initiated; ten days after injury the animals received intra-spinal injections of culture medium (sham group) or fNSC extracted from the telencephalic vesicles (TV group) or from the ventral medulla (VM group) of E14 embryos of the same species. Behavioral and pain assessment were performed weekly during eight weeks. Thereafter, spinal cords were processed for immunofluorescence, and transplanted fetal cells were quantified by stereology. The results showed improvement of thermal hyperalgesia in TV group after the fifth week of transplantation (p < 0.001) and in VM group after the fourth week (p < 0.001). Moreover, mechanical allodynia improved in both TV and VM groups at the 8th week (TV p < 0.05 and VM p < 0.01 compared to sham). No significant motor recovery was observed in TV and VM groups when compared to sham group. Stereological analyses showed that ~70% of TV and VM cells differentiated into NeuN+ neurons, with high proportion of enkephalinergic and GABAergic cells in the TV group (44% and 42%, respectively) and enkephalinergic and Serotoninergic cells in the VM group (50% and 47%, respectively). Our study suggests that neuronal precursors from the TV and VM, once implanted into the injured spinal cord, maturate into different neuronal subtypes, mainly GABAergic, serotoninergic, and enkephalinergic, and both precursors were able to alleviate pain, despite no significant motor recovery